Wall clock time and date at job start Mon Mar 30 2020 04:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99857 * 2 1 4 4 H 1.48495 * 109.47025 * 269.99709 * 3 2 1 5 5 H 1.48490 * 109.47160 * 30.00108 * 3 2 1 6 6 H 1.48506 * 109.46938 * 150.00148 * 3 2 1 7 7 C 1.37877 * 120.00019 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99895 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47110 * 60.00552 * 9 7 2 11 11 N 1.46898 * 109.47329 * 300.00288 * 9 7 2 12 12 C 1.50700 * 109.46995 * 180.02562 * 9 7 2 13 13 C 1.37759 * 119.90397 * 100.00169 * 12 9 7 14 14 C 1.39743 * 119.90398 * 179.97438 * 13 12 9 15 15 C 1.47441 * 120.14927 * 179.97438 * 14 13 12 16 16 O 1.21511 * 119.99934 * 180.02562 * 15 14 13 17 17 O 1.34750 * 119.99892 * 0.02562 * 15 14 13 18 18 C 1.40005 * 119.70667 * 0.02562 * 14 13 12 19 19 F 1.35097 * 120.09705 * 179.72588 * 18 14 13 20 20 C 1.38137 * 119.80189 * 0.02562 * 18 14 13 21 21 C 1.38550 * 120.09529 * 359.97438 * 20 18 14 22 22 F 1.35099 * 119.85058 * 180.02562 * 21 20 18 23 23 H 0.97004 * 119.99967 * 359.97438 * 1 2 3 24 24 H 1.00903 * 110.99602 * 300.00002 * 11 9 7 25 25 H 1.00898 * 111.00225 * 63.95250 * 11 9 7 26 26 H 1.08002 * 120.04237 * 0.02562 * 13 12 9 27 27 H 0.96689 * 116.99908 * 179.97438 * 17 15 14 28 28 H 1.07998 * 119.95345 * 179.97438 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6241 -2.5567 -0.8903 11 7 0.4068 -2.5772 1.1991 12 6 2.2303 -3.6446 -0.0005 13 6 2.5190 -4.3014 1.1755 14 6 3.4266 -5.3638 1.1754 15 6 3.7400 -6.0702 2.4311 16 8 4.5300 -6.9934 2.4279 17 8 3.1502 -5.6920 3.5821 18 6 4.0380 -5.7539 -0.0222 19 9 4.9209 -6.7765 -0.0303 20 6 3.7405 -5.0862 -1.1942 21 6 2.8393 -4.0338 -1.1847 22 9 2.5515 -3.3845 -2.3339 23 1 -0.4850 0.8401 0.0004 24 1 0.9652 -2.5260 2.0381 25 1 -0.3005 -1.8577 1.1911 26 1 2.0437 -3.9960 2.0960 27 1 3.3869 -6.1852 4.3793 28 1 4.2110 -5.3848 -2.1193 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260077035.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:05 Heat of formation + Delta-G solvation = -177.666080 kcal Electronic energy + Delta-G solvation = -18854.300715 eV Core-core repulsion = 15312.220719 eV Total energy + Delta-G solvation = -3542.079996 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.065 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.11537 -50.01255 -41.34024 -39.77541 -37.11117 -36.56589 -33.62506 -32.36459 -30.82330 -28.04153 -25.64574 -25.08109 -23.29199 -21.52440 -19.35378 -19.29175 -18.67898 -18.10853 -18.03930 -17.22544 -17.05318 -16.53313 -16.34555 -16.20218 -15.62017 -15.55531 -15.30089 -14.77417 -14.36203 -14.03552 -13.52066 -13.38447 -13.01218 -12.82252 -12.79193 -12.57161 -12.48608 -11.98090 -11.86764 -11.59148 -10.74498 -10.19144 -9.72545 -9.23232 -8.14952 -6.39615 -0.66930 -0.01343 1.31567 1.39133 1.42836 1.50828 1.94004 2.31999 2.44492 2.71142 3.04448 3.24066 3.52812 3.72459 3.90218 4.09748 4.51878 4.65773 4.70886 4.80816 4.94792 5.05206 5.50081 5.53838 5.62248 5.62919 5.97307 6.59761 6.85597 6.94482 7.08973 7.36448 8.80754 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.024932 B = 0.006730 C = 0.005986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.788524 B = 4159.584764 C = 4676.434769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.029 3.971 3 Si 0.956 3.044 4 H -0.280 1.280 5 H -0.280 1.280 6 H -0.271 1.271 7 C -0.560 4.560 8 H 0.049 0.951 9 C 0.248 3.752 10 H 0.022 0.978 11 N -0.840 5.840 12 C -0.111 4.111 13 C 0.009 3.991 14 C -0.186 4.186 15 C 0.542 3.458 16 O -0.536 6.536 17 O -0.496 6.496 18 C 0.169 3.831 19 F -0.117 7.117 20 C -0.191 4.191 21 C 0.155 3.845 22 F -0.128 7.128 23 H 0.269 0.731 24 H 0.323 0.677 25 H 0.351 0.649 26 H 0.166 0.834 27 H 0.436 0.564 28 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.359 -8.345 3.388 10.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.172 4.172 3 Si 0.782 3.218 4 H -0.206 1.206 5 H -0.205 1.205 6 H -0.195 1.195 7 C -0.600 4.600 8 H 0.067 0.933 9 C 0.138 3.862 10 H 0.040 0.960 11 N -0.370 5.370 12 C -0.112 4.112 13 C -0.009 4.009 14 C -0.188 4.188 15 C 0.387 3.613 16 O -0.428 6.428 17 O -0.310 6.310 18 C 0.149 3.851 19 F -0.095 7.095 20 C -0.210 4.210 21 C 0.135 3.865 22 F -0.106 7.106 23 H 0.079 0.921 24 H 0.134 0.866 25 H 0.166 0.834 26 H 0.183 0.817 27 H 0.299 0.701 28 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 5.097 -8.999 2.742 10.700 hybrid contribution 0.861 1.634 0.205 1.858 sum 5.958 -7.365 2.948 9.921 Atomic orbital electron populations 1.69811 1.06809 1.28166 1.50219 1.25644 0.95693 1.02110 0.93793 0.85585 0.78747 0.79376 0.78097 1.20588 1.20529 1.19538 1.21921 0.93338 0.91947 1.52766 0.93268 1.17650 0.88838 0.88102 0.91649 0.95976 1.59506 1.17986 1.55635 1.03829 1.20507 0.99822 0.98779 0.92120 1.21064 0.91292 0.89710 0.98828 1.19194 1.05976 1.02729 0.90948 1.20256 0.76766 0.80012 0.84242 1.90921 1.34822 1.29773 1.87328 1.84551 1.65817 1.61769 1.18839 1.17142 0.89226 0.86269 0.92493 1.91574 1.65138 1.55753 1.97068 1.20971 1.02460 0.97793 0.99798 1.17626 0.95528 0.91434 0.81900 1.91520 1.91767 1.79984 1.47327 0.92141 0.86594 0.83395 0.81672 0.70121 0.80128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.84 11.54 21.45 0.25 -47.59 15 2 C 0.03 1.47 5.38 84.65 0.46 1.92 15 3 Si 0.96 41.02 29.54 68.60 2.03 43.05 15 4 H -0.28 -12.03 7.11 99.48 0.71 -11.33 15 5 H -0.28 -11.72 7.11 99.48 0.71 -11.01 15 6 H -0.27 -11.42 7.11 99.48 0.71 -10.71 15 7 C -0.56 -28.41 8.70 25.60 0.22 -28.18 15 8 H 0.05 2.52 7.74 -2.91 -0.02 2.50 15 9 C 0.25 11.57 2.66 43.42 0.12 11.69 15 10 H 0.02 1.19 7.94 -2.39 -0.02 1.17 15 11 N -0.84 -36.28 8.66 -174.96 -1.52 -37.79 15 12 C -0.11 -4.33 5.03 -19.86 -0.10 -4.43 15 13 C 0.01 0.32 8.81 22.52 0.20 0.52 15 14 C -0.19 -5.81 5.88 -20.06 -0.12 -5.93 15 15 C 0.54 15.50 8.26 70.25 0.58 16.08 15 16 O -0.54 -17.70 16.12 19.80 0.32 -17.38 15 17 O -0.50 -10.46 12.68 -56.60 -0.72 -11.18 15 18 C 0.17 5.19 7.28 22.67 0.17 5.35 15 19 F -0.12 -3.67 15.55 44.97 0.70 -2.97 15 20 C -0.19 -5.63 9.99 22.32 0.22 -5.40 15 21 C 0.16 5.61 7.24 22.46 0.16 5.77 15 22 F -0.13 -4.99 16.64 44.97 0.75 -4.25 15 23 H 0.27 13.50 8.31 -92.71 -0.77 12.73 15 24 H 0.32 12.78 7.27 -89.69 -0.65 12.12 15 25 H 0.35 16.60 7.08 -89.70 -0.63 15.96 15 26 H 0.17 5.23 5.78 -2.91 -0.02 5.22 15 27 H 0.44 4.51 9.11 -74.06 -0.67 3.83 15 28 H 0.18 4.15 8.06 -2.91 -0.02 4.12 15 Total: -1.00 -59.14 262.56 3.02 -56.12 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: -0.69 Total: 24.60 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: 1.91 Total: -2.62 kcal Atomic # 7 Polarization: -84.11 SS G_CDS: -1.27 Total: -85.38 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -0.40 Total: -28.56 kcal Atomic # 9 Polarization: -8.66 SS G_CDS: 1.45 Total: -7.21 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Total: -59.14 3.02 -56.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260077035.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.543 kcal (2) G-P(sol) polarization free energy of solvation -59.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds