Wall clock time and date at job start Mon Mar 30 2020 04:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36033 * 116.99502 * 2 1 4 4 C 1.38649 * 119.99673 * 0.02562 * 3 2 1 5 5 C 1.38521 * 119.97468 * 180.02562 * 4 3 2 6 6 O 1.36037 * 120.02255 * 180.02562 * 5 4 3 7 7 C 1.39119 * 119.95039 * 359.97438 * 5 4 3 8 8 O 1.36067 * 120.01228 * 179.97438 * 7 5 4 9 9 C 1.38540 * 119.97713 * 359.97438 * 7 5 4 10 10 C 1.50700 * 119.98411 * 179.97438 * 9 7 5 11 11 H 1.09004 * 109.47406 * 345.00567 * 10 9 7 12 12 N 1.46895 * 109.47433 * 225.00088 * 10 9 7 13 13 C 1.50706 * 109.47064 * 105.00265 * 10 9 7 14 14 H 1.07998 * 119.99501 * 359.97438 * 13 10 9 15 15 C 1.37871 * 120.00436 * 179.97438 * 13 10 9 16 16 N 1.31514 * 120.00481 * 179.97438 * 15 13 10 17 17 Si 1.86803 * 119.99886 * 359.72901 * 15 13 10 18 18 H 1.48502 * 109.46964 * 270.27509 * 17 15 13 19 19 H 1.48505 * 109.47036 * 30.26897 * 17 15 13 20 20 H 1.48490 * 109.47395 * 150.27411 * 17 15 13 21 21 C 1.38393 * 120.03107 * 0.27412 * 9 7 5 22 22 F 1.35102 * 119.97606 * 179.72439 * 21 9 7 23 23 H 1.09004 * 109.47154 * 299.99525 * 1 2 3 24 24 H 1.08994 * 109.47180 * 59.99925 * 1 2 3 25 25 H 1.09004 * 109.46918 * 179.97438 * 1 2 3 26 26 H 1.08007 * 120.00991 * 0.03937 * 4 3 2 27 27 H 0.96694 * 114.00523 * 269.97822 * 6 5 4 28 28 H 0.96703 * 113.99562 * 270.01826 * 8 7 5 29 29 H 1.00907 * 111.00270 * 300.00635 * 12 10 9 30 30 H 1.00898 * 111.00106 * 63.95734 * 12 10 9 31 31 H 0.96999 * 120.00235 * 179.72806 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2121 0.0000 4 6 1.2912 2.3748 0.0005 5 6 1.9204 3.6089 0.0000 6 8 1.1803 4.7503 0.0011 7 6 3.3098 3.6800 -0.0005 8 8 3.9292 4.8916 -0.0016 9 6 4.0625 2.5170 0.0000 10 6 5.5675 2.5939 -0.0012 11 1 5.8796 3.6036 -0.2682 12 7 6.1059 1.6400 -0.9800 13 6 6.0890 2.2535 1.3712 14 1 5.3994 2.0066 2.1649 15 6 7.4462 2.2573 1.6135 16 7 7.9013 1.9607 2.8113 17 14 8.6393 2.6769 0.2388 18 1 9.0173 1.4362 -0.4845 19 1 7.9929 3.6230 -0.7059 20 1 9.8559 3.3050 0.8136 21 6 3.4330 1.2845 -0.0047 22 9 4.1681 0.1510 -0.0098 23 1 -0.3634 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2126 2.3183 0.0016 27 1 0.9655 5.0807 -0.8819 28 1 4.1076 5.2412 -0.8854 29 1 5.8303 0.6959 -0.7542 30 1 5.8230 1.8849 -1.9170 31 1 8.8563 1.9595 2.9807 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260118958.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:56 Heat of formation + Delta-G solvation = -129.518397 kcal Electronic energy + Delta-G solvation = -19756.545836 eV Core-core repulsion = 16340.013985 eV Total energy + Delta-G solvation = -3416.531851 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.38846 -40.30494 -38.73762 -37.01407 -35.69674 -34.16477 -31.76449 -29.39856 -28.98148 -26.89619 -26.27135 -23.15823 -22.24503 -20.53846 -18.52014 -18.11830 -17.50724 -17.24563 -16.72901 -16.00854 -15.72958 -15.02703 -14.83887 -14.55281 -14.39818 -14.10701 -13.86049 -13.54952 -13.19250 -12.62397 -12.19171 -11.96192 -11.75418 -11.37855 -11.20701 -10.88897 -10.65643 -10.40693 -10.12017 -9.76627 -9.29782 -8.50214 -8.30691 -7.83084 -7.71231 -5.97448 -4.07811 1.19215 1.33572 3.16057 3.52854 3.58687 3.63696 3.75508 4.09181 4.26148 4.60530 4.67411 4.88936 5.01409 5.05126 5.25063 5.33710 5.36442 5.73162 5.86076 5.92949 5.96744 6.09433 6.40019 6.72042 6.93065 7.27607 7.50215 7.55674 8.00265 8.13883 8.30493 8.66725 9.00396 9.63400 11.12123 Molecular weight = 257.09amu Principal moments of inertia in cm(-1) A = 0.023980 B = 0.008087 C = 0.006762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.363073 B = 3461.424588 C = 4139.584128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.307 6.307 3 C 0.098 3.902 4 C -0.215 4.215 5 C 0.105 3.895 6 O -0.484 6.484 7 C 0.074 3.926 8 O -0.468 6.468 9 C -0.079 4.079 10 C 0.223 3.777 11 H 0.065 0.935 12 N -0.847 5.847 13 C -0.513 4.513 14 H 0.070 0.930 15 C 0.083 3.917 16 N -0.897 5.897 17 Si 0.940 3.060 18 H -0.280 1.280 19 H -0.275 1.275 20 H -0.318 1.318 21 C 0.083 3.917 22 F -0.116 7.116 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.100 0.900 26 H 0.141 0.859 27 H 0.383 0.617 28 H 0.378 0.622 29 H 0.345 0.655 30 H 0.308 0.692 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.185 1.195 -11.037 18.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.221 6.221 3 C 0.052 3.948 4 C -0.234 4.234 5 C 0.059 3.941 6 O -0.293 6.293 7 C 0.028 3.972 8 O -0.276 6.276 9 C -0.083 4.083 10 C 0.114 3.886 11 H 0.082 0.918 12 N -0.380 5.380 13 C -0.551 4.551 14 H 0.089 0.911 15 C -0.121 4.121 16 N -0.534 5.534 17 Si 0.772 3.228 18 H -0.206 1.206 19 H -0.200 1.200 20 H -0.248 1.248 21 C 0.062 3.938 22 F -0.094 7.094 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.119 0.881 26 H 0.159 0.841 27 H 0.238 0.762 28 H 0.232 0.768 29 H 0.164 0.836 30 H 0.119 0.881 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.196 1.034 -9.438 17.078 hybrid contribution -0.649 0.028 -1.679 1.801 sum -14.844 1.062 -11.118 18.576 Atomic orbital electron populations 1.23073 0.78450 1.03957 1.01316 1.86176 1.21297 1.25644 1.88961 1.18766 0.90592 0.85081 1.00358 1.20983 1.00315 0.90617 1.11508 1.18432 0.88596 0.85523 1.01554 1.84928 1.72289 1.39409 1.32724 1.18194 0.88505 0.85550 1.04971 1.85053 1.79428 1.31118 1.32033 1.21560 1.01687 0.89618 0.95461 1.18675 0.81183 0.94571 0.94147 0.91779 1.59464 1.66341 1.08180 1.04037 1.20605 0.92929 1.49208 0.92362 0.91149 1.24975 0.98460 0.92928 0.95731 1.69949 1.14209 1.47742 1.21460 0.85822 0.77578 0.78587 0.80822 1.20616 1.20015 1.24765 1.16571 0.85165 0.82895 1.09119 1.91377 1.75966 1.48137 1.93958 0.92503 0.92742 0.88133 0.84117 0.76166 0.76766 0.83619 0.88122 0.92629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.26 16 2 O -0.31 -4.73 10.36 -19.84 -0.21 -4.93 16 3 C 0.10 1.66 6.69 -39.21 -0.26 1.40 16 4 C -0.21 -3.12 8.97 -39.33 -0.35 -3.48 16 5 C 0.10 1.63 6.71 -39.15 -0.26 1.36 16 6 O -0.48 -6.36 13.29 -34.47 -0.46 -6.82 16 7 C 0.07 1.35 6.69 -39.14 -0.26 1.09 16 8 O -0.47 -8.12 12.11 -34.56 -0.42 -8.54 16 9 C -0.08 -1.63 4.89 -104.45 -0.51 -2.15 16 10 C 0.22 5.28 2.16 -70.02 -0.15 5.13 16 11 H 0.06 1.53 6.21 -51.93 -0.32 1.21 16 12 N -0.85 -18.41 6.62 -6.65 -0.04 -18.45 16 13 C -0.51 -14.95 9.23 -34.44 -0.32 -15.27 16 14 H 0.07 2.28 7.98 -52.49 -0.42 1.86 16 15 C 0.08 2.49 5.47 -17.82 -0.10 2.40 16 16 N -0.90 -28.38 13.96 55.43 0.77 -27.61 16 17 Si 0.94 24.31 26.02 -169.99 -4.42 19.89 16 18 H -0.28 -7.25 7.11 56.52 0.40 -6.84 16 19 H -0.27 -6.76 6.55 56.52 0.37 -6.39 16 20 H -0.32 -8.27 7.11 56.52 0.40 -7.87 16 21 C 0.08 1.65 7.02 -39.30 -0.28 1.38 16 22 F -0.12 -2.49 14.14 2.25 0.03 -2.46 16 23 H 0.06 0.51 7.66 -51.93 -0.40 0.12 16 24 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 25 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.14 1.60 6.29 -52.48 -0.33 1.27 16 27 H 0.38 2.78 9.06 45.56 0.41 3.20 16 28 H 0.38 4.35 9.07 45.56 0.41 4.76 16 29 H 0.35 7.61 6.10 -39.29 -0.24 7.37 16 30 H 0.31 5.58 9.06 -39.29 -0.36 5.22 16 31 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 LS Contribution 270.44 15.07 4.08 4.08 Total: -1.00 -36.59 270.44 -3.39 -39.98 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -1.23 Total: 11.75 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -1.50 Total: -6.88 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: 0.73 Total: -46.06 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -1.08 Total: -20.30 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.03 Total: -2.46 kcal Atomic # 14 Polarization: 24.31 SS G_CDS: -4.42 Total: 19.89 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -36.59 -3.39 -39.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260118958.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.538 kcal (2) G-P(sol) polarization free energy of solvation -36.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds