Wall clock time and date at job start Mon Mar 30 2020 04:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36033 * 116.99502 * 2 1 4 4 C 1.38649 * 119.99673 * 0.02562 * 3 2 1 5 5 C 1.38521 * 119.97468 * 180.02562 * 4 3 2 6 6 O 1.36037 * 120.02255 * 180.02562 * 5 4 3 7 7 C 1.39119 * 119.95039 * 359.97438 * 5 4 3 8 8 O 1.36067 * 120.01228 * 179.97438 * 7 5 4 9 9 C 1.38540 * 119.97713 * 359.97438 * 7 5 4 10 10 C 1.50700 * 119.98411 * 179.97438 * 9 7 5 11 11 H 1.09004 * 109.47406 * 345.00567 * 10 9 7 12 12 N 1.46895 * 109.47433 * 225.00088 * 10 9 7 13 13 C 1.50706 * 109.47064 * 105.00265 * 10 9 7 14 14 H 1.07998 * 119.99501 * 359.97438 * 13 10 9 15 15 C 1.37871 * 120.00436 * 179.97438 * 13 10 9 16 16 N 1.31514 * 120.00481 * 179.97438 * 15 13 10 17 17 Si 1.86803 * 119.99886 * 359.72901 * 15 13 10 18 18 H 1.48502 * 109.46964 * 270.27509 * 17 15 13 19 19 H 1.48505 * 109.47036 * 30.26897 * 17 15 13 20 20 H 1.48490 * 109.47395 * 150.27411 * 17 15 13 21 21 C 1.38393 * 120.03107 * 0.27412 * 9 7 5 22 22 F 1.35102 * 119.97606 * 179.72439 * 21 9 7 23 23 H 1.09004 * 109.47154 * 299.99525 * 1 2 3 24 24 H 1.08994 * 109.47180 * 59.99925 * 1 2 3 25 25 H 1.09004 * 109.46918 * 179.97438 * 1 2 3 26 26 H 1.08007 * 120.00991 * 0.03937 * 4 3 2 27 27 H 0.96694 * 114.00523 * 269.97822 * 6 5 4 28 28 H 0.96703 * 113.99562 * 270.01826 * 8 7 5 29 29 H 1.00907 * 111.00270 * 300.00635 * 12 10 9 30 30 H 1.00898 * 111.00106 * 63.95734 * 12 10 9 31 31 H 0.96999 * 120.00235 * 179.72806 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2121 0.0000 4 6 1.2912 2.3748 0.0005 5 6 1.9204 3.6089 0.0000 6 8 1.1803 4.7503 0.0011 7 6 3.3098 3.6800 -0.0005 8 8 3.9292 4.8916 -0.0016 9 6 4.0625 2.5170 0.0000 10 6 5.5675 2.5939 -0.0012 11 1 5.8796 3.6036 -0.2682 12 7 6.1059 1.6400 -0.9800 13 6 6.0890 2.2535 1.3712 14 1 5.3994 2.0066 2.1649 15 6 7.4462 2.2573 1.6135 16 7 7.9013 1.9607 2.8113 17 14 8.6393 2.6769 0.2388 18 1 9.0173 1.4362 -0.4845 19 1 7.9929 3.6230 -0.7059 20 1 9.8559 3.3050 0.8136 21 6 3.4330 1.2845 -0.0047 22 9 4.1681 0.1510 -0.0098 23 1 -0.3634 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2126 2.3183 0.0016 27 1 0.9655 5.0807 -0.8819 28 1 4.1076 5.2412 -0.8854 29 1 5.8303 0.6959 -0.7542 30 1 5.8230 1.8849 -1.9170 31 1 8.8563 1.9595 2.9807 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260118958.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:56 Heat of formation + Delta-G solvation = -162.803836 kcal Electronic energy + Delta-G solvation = -19757.989201 eV Core-core repulsion = 16340.013985 eV Total energy + Delta-G solvation = -3417.975216 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.91485 -41.54851 -39.89740 -38.25203 -37.13127 -35.74216 -33.91074 -30.77325 -30.13732 -28.33879 -27.85493 -24.77712 -23.52302 -22.10662 -19.82799 -19.38003 -19.26121 -18.51355 -18.32803 -17.22825 -17.17955 -16.57455 -16.20620 -16.01527 -15.85294 -15.52890 -15.41243 -15.08014 -14.55618 -14.21802 -14.11732 -13.01706 -12.97971 -12.75525 -12.71079 -12.62840 -12.38711 -11.82408 -11.68724 -11.43192 -11.33888 -10.76883 -9.76764 -9.42794 -9.08885 -8.26812 -6.40905 -0.10649 0.03233 1.48587 1.57827 1.70352 2.09318 2.24943 2.51430 2.94242 3.06570 3.09972 3.33220 3.67399 4.00201 4.14770 4.28748 4.37475 4.38467 4.52692 4.70425 4.75052 4.86071 5.02363 5.20996 5.39937 5.50570 6.06113 6.18832 6.37538 6.63522 6.68803 6.91642 6.95365 7.34039 8.87223 Molecular weight = 257.09amu Principal moments of inertia in cm(-1) A = 0.023980 B = 0.008087 C = 0.006762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.363073 B = 3461.424588 C = 4139.584128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.329 6.329 3 C 0.104 3.896 4 C -0.196 4.196 5 C 0.124 3.876 6 O -0.486 6.486 7 C 0.063 3.937 8 O -0.486 6.486 9 C -0.107 4.107 10 C 0.233 3.767 11 H 0.065 0.935 12 N -0.849 5.849 13 C -0.516 4.516 14 H 0.018 0.982 15 C 0.024 3.976 16 N -0.949 5.949 17 Si 1.007 2.993 18 H -0.278 1.278 19 H -0.252 1.252 20 H -0.320 1.320 21 C 0.048 3.952 22 F -0.136 7.136 23 H 0.066 0.934 24 H 0.079 0.921 25 H 0.122 0.878 26 H 0.182 0.818 27 H 0.413 0.587 28 H 0.402 0.598 29 H 0.343 0.657 30 H 0.333 0.667 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.499 2.215 -13.268 22.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.243 6.243 3 C 0.057 3.943 4 C -0.215 4.215 5 C 0.078 3.922 6 O -0.300 6.300 7 C 0.017 3.983 8 O -0.298 6.298 9 C -0.111 4.111 10 C 0.123 3.877 11 H 0.083 0.917 12 N -0.384 5.384 13 C -0.554 4.554 14 H 0.036 0.964 15 C -0.175 4.175 16 N -0.589 5.589 17 Si 0.836 3.164 18 H -0.204 1.204 19 H -0.176 1.176 20 H -0.250 1.250 21 C 0.027 3.973 22 F -0.115 7.115 23 H 0.085 0.915 24 H 0.098 0.902 25 H 0.141 0.859 26 H 0.199 0.801 27 H 0.273 0.727 28 H 0.260 0.740 29 H 0.161 0.839 30 H 0.146 0.854 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.557 2.080 -11.727 20.396 hybrid contribution -0.183 -0.274 -0.967 1.021 sum -16.739 1.805 -12.694 21.086 Atomic orbital electron populations 1.23511 0.75359 1.06171 1.02963 1.86164 1.24461 1.25094 1.88592 1.18756 0.89637 0.86533 0.99373 1.21336 1.02024 0.89148 1.09038 1.18337 0.87644 0.86696 0.99546 1.84862 1.71384 1.38364 1.35367 1.18322 0.89680 0.84909 1.05398 1.84977 1.79640 1.30707 1.34438 1.21249 1.00103 0.91155 0.98616 1.18239 0.83639 0.94435 0.91383 0.91744 1.59173 1.66402 1.07697 1.05129 1.20858 0.92200 1.48186 0.94151 0.96392 1.25936 1.00492 0.93016 0.98060 1.70093 1.14655 1.50221 1.23891 0.84751 0.75005 0.78758 0.77897 1.20391 1.17569 1.25028 1.16893 0.86727 0.82168 1.11462 1.91305 1.76711 1.49086 1.94405 0.91498 0.90228 0.85935 0.80120 0.72660 0.74025 0.83893 0.85398 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.81 113.37 1.11 1.33 16 2 O -0.33 -9.52 10.36 -93.92 -0.97 -10.49 16 3 C 0.10 3.34 6.69 22.51 0.15 3.49 16 4 C -0.20 -5.02 8.97 22.44 0.20 -4.81 16 5 C 0.12 3.46 6.71 22.55 0.15 3.62 16 6 O -0.49 -10.67 13.29 -80.00 -1.06 -11.74 16 7 C 0.06 2.22 6.69 22.55 0.15 2.37 16 8 O -0.49 -16.09 12.11 -80.34 -0.97 -17.06 16 9 C -0.11 -4.44 4.89 -19.76 -0.10 -4.53 16 10 C 0.23 11.07 2.16 43.43 0.09 11.17 16 11 H 0.06 3.03 6.21 -2.39 -0.01 3.01 16 12 N -0.85 -36.52 6.62 -174.95 -1.16 -37.68 16 13 C -0.52 -31.27 9.23 25.60 0.24 -31.03 16 14 H 0.02 1.23 7.98 -2.91 -0.02 1.21 16 15 C 0.02 1.45 5.47 84.65 0.46 1.91 16 16 N -0.95 -62.61 13.96 21.45 0.30 -62.31 16 17 Si 1.01 50.72 26.02 68.60 1.78 52.50 16 18 H -0.28 -13.80 7.11 99.48 0.71 -13.10 16 19 H -0.25 -11.57 6.55 99.48 0.65 -10.92 16 20 H -0.32 -16.10 7.11 99.48 0.71 -15.39 16 21 C 0.05 1.92 7.02 22.45 0.16 2.07 16 22 F -0.14 -6.07 14.14 44.97 0.64 -5.43 16 23 H 0.07 0.94 7.66 -2.39 -0.02 0.93 16 24 H 0.08 0.88 7.66 -2.39 -0.02 0.86 16 25 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.18 3.10 6.29 -2.91 -0.02 3.08 16 27 H 0.41 3.92 9.06 -74.06 -0.67 3.25 16 28 H 0.40 8.35 9.07 -74.06 -0.67 7.68 16 29 H 0.34 15.32 6.10 -89.69 -0.55 14.77 16 30 H 0.33 11.58 9.06 -89.70 -0.81 10.76 16 31 H 0.27 16.40 8.31 -92.71 -0.77 15.63 16 Total: -1.00 -83.13 270.44 -0.35 -83.48 By element: Atomic # 1 Polarization: 24.67 SS G_CDS: -1.52 Total: 23.15 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: 2.62 Total: -14.43 kcal Atomic # 7 Polarization: -99.13 SS G_CDS: -0.86 Total: -99.99 kcal Atomic # 8 Polarization: -36.28 SS G_CDS: -3.01 Total: -39.29 kcal Atomic # 9 Polarization: -6.07 SS G_CDS: 0.64 Total: -5.43 kcal Atomic # 14 Polarization: 50.72 SS G_CDS: 1.78 Total: 52.50 kcal Total: -83.13 -0.35 -83.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260118958.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.322 kcal (2) G-P(sol) polarization free energy of solvation -83.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds