Wall clock time and date at job start Mon Mar 30 2020 04:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86790 * 120.00421 * 2 1 4 4 H 1.48502 * 109.47471 * 270.00149 * 3 2 1 5 5 H 1.48495 * 109.47230 * 30.00076 * 3 2 1 6 6 H 1.48501 * 109.47330 * 150.00292 * 3 2 1 7 7 C 1.37881 * 119.99518 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00421 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99876 * 179.97438 * 7 2 1 10 10 H 1.08993 * 109.07490 * 0.90572 * 9 7 2 11 11 C 1.52765 * 109.08326 * 241.91080 * 9 7 2 12 12 C 1.53504 * 107.81524 * 301.81915 * 11 9 7 13 13 C 1.50420 * 107.85994 * 301.47283 * 12 11 9 14 14 O 1.21284 * 119.08621 * 204.53708 * 13 12 11 15 15 N 1.34475 * 121.83129 * 24.54585 * 13 12 11 16 16 C 1.47562 * 117.07617 * 190.97263 * 15 13 12 17 17 C 1.53054 * 109.47222 * 245.14016 * 16 15 13 18 18 S 1.81808 * 108.84114 * 301.26795 * 17 16 15 19 19 O 1.42103 * 109.38088 * 298.43950 * 18 17 16 20 20 C 1.81723 * 102.08278 * 54.32387 * 18 17 16 21 21 C 1.45472 * 123.74742 * 9.83772 * 15 13 12 22 22 H 1.08997 * 107.39907 * 232.55631 * 21 15 13 23 23 H 0.97009 * 119.99746 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.78630 * 61.40082 * 11 9 7 25 25 H 1.08993 * 109.78617 * 182.23963 * 11 9 7 26 26 H 1.09001 * 109.78393 * 61.06621 * 12 11 9 27 27 H 1.09004 * 109.77957 * 181.88232 * 12 11 9 28 28 H 1.08997 * 109.47352 * 5.14618 * 16 15 13 29 29 H 1.09007 * 109.46720 * 125.14967 * 16 15 13 30 30 H 1.09004 * 109.58615 * 60.97061 * 17 16 15 31 31 H 1.09002 * 109.59204 * 181.26378 * 17 16 15 32 32 H 1.08994 * 109.57783 * 186.43452 * 20 18 17 33 33 H 1.08994 * 109.57465 * 66.17139 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6525 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 -0.0011 10 1 3.8677 -0.1643 0.0153 11 6 4.0104 -1.8737 -1.2751 12 6 3.4356 -3.2968 -1.3043 13 6 3.8973 -4.0064 -0.0610 14 8 3.9622 -5.2175 -0.0629 15 7 4.2400 -3.3353 1.0528 16 6 4.9095 -4.1031 2.1204 17 6 4.0093 -4.1487 3.3574 18 16 3.6708 -2.4469 3.9003 19 8 4.8925 -1.8128 4.2536 20 6 3.0108 -1.6888 2.3863 21 6 4.0085 -1.9116 1.2419 22 1 4.9583 -1.4628 1.5327 23 1 -0.4850 0.8401 0.0004 24 1 3.6667 -1.3189 -2.1481 25 1 5.0995 -1.9156 -1.2687 26 1 2.3466 -3.2546 -1.3222 27 1 3.7996 -3.8236 -2.1865 28 1 5.1009 -5.1182 1.7726 29 1 5.8539 -3.6224 2.3759 30 1 3.0710 -4.6443 3.1084 31 1 4.5115 -4.6963 4.1549 32 1 2.8696 -0.6198 2.5448 33 1 2.0561 -2.1498 2.1334 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260205329.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:37 Heat of formation + Delta-G solvation = -91.048215 kcal Electronic energy + Delta-G solvation = -18455.429580 eV Core-core repulsion = 15606.779097 eV Total energy + Delta-G solvation = -2848.650483 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.087 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.62681 -38.29932 -36.74211 -36.16037 -34.14024 -32.49649 -31.23107 -28.74052 -26.50242 -24.90215 -23.50244 -22.43653 -19.95020 -18.72745 -18.23332 -17.68760 -17.24540 -16.59302 -16.27788 -15.96788 -15.77435 -15.22542 -15.12975 -14.75750 -14.43088 -14.34732 -13.92519 -13.40621 -13.26401 -12.99127 -12.90606 -12.77525 -12.54455 -12.32750 -12.11620 -11.79380 -11.28287 -11.04604 -10.84762 -10.67680 -10.46478 -9.95924 -9.04687 -8.19888 -6.20701 0.76260 1.36063 1.42623 1.46394 1.54681 1.66360 1.92826 2.37857 2.90151 3.14641 3.58300 3.81512 3.90963 4.01452 4.07101 4.09878 4.37171 4.38114 4.47862 4.64211 4.67954 4.79122 4.98619 5.01007 5.08647 5.14653 5.36283 5.42504 5.53511 5.71950 6.34761 6.35822 6.81637 7.07169 7.41856 8.94913 Molecular weight = 257.09amu Principal moments of inertia in cm(-1) A = 0.019759 B = 0.011098 C = 0.008272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.734370 B = 2522.406673 C = 3384.041804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.034 3.966 3 Si 0.914 3.086 4 H -0.274 1.274 5 H -0.292 1.292 6 H -0.252 1.252 7 C -0.481 4.481 8 H 0.053 0.947 9 C -0.011 4.011 10 H 0.055 0.945 11 C -0.105 4.105 12 C -0.123 4.123 13 C 0.527 3.473 14 O -0.591 6.591 15 N -0.605 5.605 16 C 0.100 3.900 17 C -0.447 4.447 18 S 1.283 4.717 19 O -0.911 6.911 20 C -0.421 4.421 21 C 0.163 3.837 22 H 0.044 0.956 23 H 0.264 0.736 24 H 0.075 0.925 25 H 0.057 0.943 26 H 0.100 0.900 27 H 0.103 0.897 28 H 0.095 0.905 29 H 0.065 0.935 30 H 0.134 0.866 31 H 0.142 0.858 32 H 0.107 0.893 33 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.322 -4.254 5.868 8.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.165 4.165 3 Si 0.741 3.259 4 H -0.199 1.199 5 H -0.218 1.218 6 H -0.176 1.176 7 C -0.520 4.520 8 H 0.071 0.929 9 C -0.031 4.031 10 H 0.073 0.927 11 C -0.144 4.144 12 C -0.163 4.163 13 C 0.318 3.682 14 O -0.473 6.473 15 N -0.337 5.337 16 C -0.023 4.023 17 C -0.585 4.585 18 S 1.484 4.516 19 O -0.906 6.906 20 C -0.559 4.559 21 C 0.058 3.942 22 H 0.063 0.937 23 H 0.073 0.927 24 H 0.094 0.906 25 H 0.075 0.925 26 H 0.118 0.882 27 H 0.121 0.879 28 H 0.113 0.887 29 H 0.084 0.916 30 H 0.152 0.848 31 H 0.160 0.840 32 H 0.125 0.875 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.353 -4.296 6.805 9.665 hybrid contribution 1.390 0.999 -1.849 2.520 sum 6.743 -3.297 4.956 8.994 Atomic orbital electron populations 1.69984 1.07609 1.27631 1.52412 1.25566 0.94988 1.01212 0.94720 0.86243 0.79597 0.81131 0.78941 1.19912 1.21817 1.17635 1.20814 0.89123 0.93158 1.48861 0.92892 1.19443 0.96439 0.96356 0.90835 0.92653 1.21627 0.98462 0.94738 0.99528 1.21727 1.03583 0.96577 0.94389 1.20952 0.74887 0.86838 0.85480 1.90591 1.56054 1.15545 1.85142 1.47983 1.59240 1.09558 1.16942 1.21631 0.94638 0.98748 0.87315 1.27884 1.07547 1.19572 1.03522 1.69623 1.02087 0.85089 0.94807 1.92960 1.50097 1.72360 1.75232 1.27975 1.07480 1.10154 1.10286 1.20713 0.96120 0.78933 0.98410 0.93742 0.92652 0.90641 0.92458 0.88220 0.87900 0.88666 0.91625 0.84814 0.83968 0.87485 0.84829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -51.26 13.96 21.45 0.30 -50.96 16 2 C 0.03 1.68 5.47 84.66 0.46 2.14 16 3 Si 0.91 39.29 27.36 68.60 1.88 41.17 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.25 -10.22 6.22 99.48 0.62 -9.60 16 7 C -0.48 -22.46 5.64 25.60 0.14 -22.31 16 8 H 0.05 2.75 6.80 -2.91 -0.02 2.73 16 9 C -0.01 -0.43 2.32 -11.98 -0.03 -0.45 16 10 H 0.06 2.27 4.36 -2.39 -0.01 2.26 16 11 C -0.11 -3.75 5.58 30.69 0.17 -3.57 16 12 C -0.12 -4.41 5.77 29.93 0.17 -4.24 16 13 C 0.53 20.20 7.41 87.62 0.65 20.85 16 14 O -0.59 -25.00 16.11 -3.04 -0.05 -25.05 16 15 N -0.60 -21.43 2.77 -799.45 -2.21 -23.65 16 16 C 0.10 3.05 6.05 86.19 0.52 3.57 16 17 C -0.45 -10.46 6.63 72.00 0.48 -9.98 16 18 S 1.28 32.69 13.75 -56.49 -0.78 31.91 16 19 O -0.91 -33.40 18.14 -148.98 -2.70 -36.10 16 20 C -0.42 -14.14 4.92 72.13 0.35 -13.79 16 21 C 0.16 6.03 2.59 44.97 0.12 6.15 16 22 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.26 13.85 8.31 -92.70 -0.77 13.08 16 24 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 25 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.10 3.92 6.47 -2.39 -0.02 3.91 16 27 H 0.10 3.22 8.14 -2.38 -0.02 3.20 16 28 H 0.10 3.01 6.71 -2.39 -0.02 2.99 16 29 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 30 H 0.13 2.89 8.14 -2.39 -0.02 2.87 16 31 H 0.14 2.55 8.14 -2.39 -0.02 2.53 16 32 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 33 H 0.13 4.72 6.90 -2.39 -0.02 4.71 16 Total: -1.00 -67.22 269.58 0.51 -66.71 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 1.03 Total: 17.61 kcal Atomic # 6 Polarization: -24.68 SS G_CDS: 3.04 Total: -21.63 kcal Atomic # 7 Polarization: -72.69 SS G_CDS: -1.91 Total: -74.61 kcal Atomic # 8 Polarization: -58.40 SS G_CDS: -2.75 Total: -61.16 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 1.88 Total: 41.17 kcal Atomic # 16 Polarization: 32.69 SS G_CDS: -0.78 Total: 31.91 kcal Total: -67.22 0.51 -66.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260205329.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.335 kcal (2) G-P(sol) polarization free energy of solvation -67.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds