Wall clock time and date at job start Mon Mar 30 2020 04:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36010 * 117.00175 * 2 1 4 4 C 1.38557 * 120.06176 * 359.97438 * 3 2 1 5 5 C 1.38241 * 120.01766 * 180.02562 * 4 3 2 6 6 C 1.38352 * 120.12986 * 359.95690 * 5 4 3 7 7 Cl 1.73603 * 119.94052 * 180.02562 * 6 5 4 8 8 C 1.38344 * 120.12159 * 0.04836 * 6 5 4 9 9 C 1.50704 * 120.00662 * 179.97438 * 8 6 5 10 10 H 1.08997 * 109.47066 * 346.30362 * 9 8 6 11 11 N 1.46897 * 109.46841 * 226.31093 * 9 8 6 12 12 C 1.50693 * 109.47299 * 106.31052 * 9 8 6 13 13 H 1.08006 * 120.00372 * 359.97438 * 12 9 8 14 14 C 1.37879 * 119.99997 * 179.97438 * 12 9 8 15 15 N 1.31513 * 119.99946 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 119.99921 * 179.97438 * 14 12 9 17 17 H 1.48499 * 109.46907 * 269.99603 * 16 14 12 18 18 H 1.48491 * 109.47359 * 30.00196 * 16 14 12 19 19 H 1.48499 * 109.46859 * 150.00080 * 16 14 12 20 20 C 1.38565 * 119.98651 * 0.24567 * 8 6 5 21 21 O 1.35991 * 120.06645 * 179.72276 * 20 8 6 22 22 H 1.09000 * 109.46726 * 300.00140 * 1 2 3 23 23 H 1.09004 * 109.47196 * 60.00208 * 1 2 3 24 24 H 1.08994 * 109.47165 * 179.97438 * 1 2 3 25 25 H 1.08009 * 119.99220 * 0.02562 * 4 3 2 26 26 H 1.07996 * 119.93476 * 179.97438 * 5 4 3 27 27 H 1.00906 * 111.00273 * 291.62369 * 11 9 8 28 28 H 1.00897 * 111.00200 * 55.57423 * 11 9 8 29 29 H 0.97001 * 119.99713 * 0.02562 * 15 14 12 30 30 H 0.96705 * 113.99333 * 90.00500 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2932 2.3747 -0.0005 5 6 1.9218 3.6059 -0.0011 6 6 3.3033 3.6804 -0.0002 7 17 4.0876 5.2292 -0.0002 8 6 4.0609 2.5228 0.0003 9 6 5.5656 2.6069 0.0007 10 1 5.8727 3.6240 -0.2428 11 7 6.1081 1.6789 -1.0005 12 6 6.0891 2.2368 1.3644 13 1 5.4010 1.9680 2.1524 14 6 7.4465 2.2414 1.6064 15 7 8.2844 2.5682 0.6469 16 14 8.0953 1.7833 3.2972 17 1 8.1929 3.0039 4.1373 18 1 7.1694 0.8147 3.9370 19 1 9.4396 1.1672 3.1612 20 6 3.4360 1.2861 -0.0054 21 8 4.1792 0.1472 -0.0106 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 0.2145 2.3192 -0.0005 26 1 1.3333 4.5115 -0.0019 27 1 5.9545 0.7202 -0.7257 28 1 5.7160 1.8608 -1.9122 29 1 7.9474 2.8064 -0.2310 30 1 4.3941 -0.1862 0.8713 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260595614.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:00 Heat of formation + Delta-G solvation = -85.060663 kcal Electronic energy + Delta-G solvation = -17384.094821 eV Core-core repulsion = 14397.827177 eV Total energy + Delta-G solvation = -2986.267644 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.55844 -39.28553 -37.96250 -36.77232 -36.34728 -33.30013 -30.82957 -30.60471 -28.12162 -27.41707 -24.58929 -23.37495 -22.11211 -19.66808 -18.77209 -18.58069 -17.66429 -17.07178 -16.49381 -16.20848 -15.78070 -15.50157 -15.37216 -15.11042 -14.22531 -14.12999 -13.84757 -13.53768 -13.03690 -12.79985 -12.71328 -12.56922 -12.24365 -11.90283 -11.69975 -11.65239 -11.49943 -10.75609 -10.42964 -9.72847 -9.16705 -9.07337 -8.34556 -6.20186 0.10714 0.17824 1.24447 1.57120 1.65238 1.81738 2.25779 2.44043 2.66888 3.23673 3.39349 3.76395 3.96851 4.11230 4.33706 4.38896 4.39432 4.52415 4.69638 4.76087 4.82048 5.04566 5.13213 5.40112 5.55402 5.94011 6.21563 6.25997 6.73369 6.79113 6.86943 7.13960 7.70867 9.01931 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.020230 B = 0.008511 C = 0.006911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.731622 B = 3288.956122 C = 4050.269365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.325 6.325 3 C 0.103 3.897 4 C -0.190 4.190 5 C -0.074 4.074 6 C -0.079 4.079 7 Cl -0.074 7.074 8 C -0.081 4.081 9 C 0.242 3.758 10 H 0.028 0.972 11 N -0.834 5.834 12 C -0.606 4.606 13 H 0.037 0.963 14 C -0.009 4.009 15 N -0.920 5.920 16 Si 1.110 2.890 17 H -0.281 1.281 18 H -0.271 1.271 19 H -0.288 1.288 20 C 0.068 3.932 21 O -0.485 6.485 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.119 0.881 25 H 0.177 0.823 26 H 0.164 0.836 27 H 0.342 0.658 28 H 0.306 0.694 29 H 0.279 0.721 30 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.008 -1.670 -0.204 18.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.239 6.239 3 C 0.056 3.944 4 C -0.209 4.209 5 C -0.092 4.092 6 C -0.107 4.107 7 Cl -0.045 7.045 8 C -0.085 4.085 9 C 0.132 3.868 10 H 0.045 0.955 11 N -0.366 5.366 12 C -0.645 4.645 13 H 0.055 0.945 14 C -0.213 4.213 15 N -0.556 5.556 16 Si 0.934 3.066 17 H -0.208 1.208 18 H -0.196 1.196 19 H -0.214 1.214 20 C 0.021 3.979 21 O -0.295 6.295 22 H 0.088 0.912 23 H 0.088 0.912 24 H 0.138 0.862 25 H 0.194 0.806 26 H 0.181 0.819 27 H 0.159 0.841 28 H 0.116 0.884 29 H 0.090 0.910 30 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -15.795 -1.562 0.221 15.874 hybrid contribution -2.102 0.208 -0.632 2.205 sum -17.897 -1.353 -0.410 17.953 Atomic orbital electron populations 1.23450 0.76100 1.05830 1.02658 1.86146 1.23743 1.25663 1.88359 1.19554 0.91035 0.86147 0.97614 1.21311 1.01576 0.89847 1.08132 1.21123 0.91015 0.99542 0.97556 1.20793 0.93338 0.86113 1.10445 1.98322 1.81686 1.27335 1.97179 1.21403 1.00251 0.91198 0.95607 1.18142 0.82863 0.93455 0.92307 0.95466 1.59408 1.64614 1.08992 1.03584 1.21814 0.94108 1.53266 0.95319 0.94500 1.26885 0.94031 0.93613 1.06738 1.70621 1.38580 1.41190 1.05185 0.83032 0.75435 0.76821 0.71327 1.20758 1.19645 1.21417 1.17488 0.86811 0.85866 1.07686 1.84669 1.71810 1.38714 1.34327 0.91151 0.91236 0.86237 0.80559 0.81870 0.84086 0.88370 0.90978 0.74953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.81 113.37 1.11 1.32 16 2 O -0.33 -9.06 10.28 -79.77 -0.82 -9.88 16 3 C 0.10 3.25 6.70 22.56 0.15 3.41 16 4 C -0.19 -4.84 9.04 22.35 0.20 -4.64 16 5 C -0.07 -2.10 9.82 22.30 0.22 -1.88 16 6 C -0.08 -2.98 6.31 22.32 0.14 -2.84 16 7 Cl -0.07 -2.80 27.05 -2.72 -0.07 -2.87 16 8 C -0.08 -3.46 4.82 -19.76 -0.10 -3.56 16 9 C 0.24 12.22 2.20 43.42 0.10 12.32 16 10 H 0.03 1.52 6.20 -2.39 -0.01 1.51 16 11 N -0.83 -41.16 7.61 -174.96 -1.33 -42.50 16 12 C -0.61 -33.40 8.40 25.60 0.21 -33.18 16 13 H 0.04 2.02 7.74 -2.91 -0.02 2.00 16 14 C -0.01 -0.50 5.39 84.66 0.46 -0.05 16 15 N -0.92 -56.79 13.50 21.45 0.29 -56.50 16 16 Si 1.11 50.67 29.90 68.60 2.05 52.72 16 17 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 18 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 19 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 20 C 0.07 2.63 6.48 22.57 0.15 2.78 16 21 O -0.49 -19.00 10.13 -79.56 -0.81 -19.81 16 22 H 0.07 0.89 7.66 -2.39 -0.02 0.87 16 23 H 0.07 0.88 7.66 -2.39 -0.02 0.86 16 24 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.18 2.88 6.30 -2.91 -0.02 2.86 16 26 H 0.16 3.49 8.06 -2.91 -0.02 3.47 16 27 H 0.34 16.68 6.27 -89.69 -0.56 16.12 16 28 H 0.31 13.96 8.98 -89.70 -0.81 13.16 16 29 H 0.28 17.59 6.39 -92.71 -0.59 17.00 16 30 H 0.39 13.94 9.06 -74.05 -0.67 13.27 16 Total: -1.00 -68.84 271.25 1.31 -67.53 By element: Atomic # 1 Polarization: 38.25 SS G_CDS: -0.65 Total: 37.61 kcal Atomic # 6 Polarization: -28.95 SS G_CDS: 2.64 Total: -26.31 kcal Atomic # 7 Polarization: -97.96 SS G_CDS: -1.04 Total: -99.00 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -1.63 Total: -29.69 kcal Atomic # 14 Polarization: 50.67 SS G_CDS: 2.05 Total: 52.72 kcal Atomic # 17 Polarization: -2.80 SS G_CDS: -0.07 Total: -2.87 kcal Total: -68.84 1.31 -67.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260595614.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.526 kcal (2) G-P(sol) polarization free energy of solvation -68.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds