Wall clock time and date at job start Mon Mar 30 2020 04:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36018 * 116.99952 * 2 1 4 4 C 1.38555 * 120.06333 * 359.97438 * 3 2 1 5 5 C 1.38239 * 120.01224 * 180.02562 * 4 3 2 6 6 C 1.38353 * 120.13581 * 0.03895 * 5 4 3 7 7 Cl 1.73595 * 119.94070 * 180.02562 * 6 5 4 8 8 C 1.38345 * 120.11960 * 359.95624 * 6 5 4 9 9 C 1.50700 * 120.00536 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.47021 * 13.12357 * 9 8 6 11 11 N 1.46897 * 109.47110 * 133.12472 * 9 8 6 12 12 C 1.50705 * 109.46645 * 253.12640 * 9 8 6 13 13 H 1.07994 * 120.00278 * 359.97438 * 12 9 8 14 14 C 1.37873 * 119.99702 * 180.02562 * 12 9 8 15 15 N 1.31518 * 120.00109 * 359.97438 * 14 12 9 16 16 Si 1.86800 * 120.00244 * 179.97438 * 14 12 9 17 17 H 1.48506 * 109.46615 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46889 * 119.99918 * 16 14 12 19 19 H 1.48497 * 109.47725 * 240.00305 * 16 14 12 20 20 C 1.38562 * 119.98284 * 0.02562 * 8 6 5 21 21 O 1.35993 * 120.06132 * 180.27028 * 20 8 6 22 22 H 1.08999 * 109.47212 * 300.00424 * 1 2 3 23 23 H 1.09002 * 109.46750 * 60.00052 * 1 2 3 24 24 H 1.08999 * 109.47383 * 179.97438 * 1 2 3 25 25 H 1.08000 * 119.99085 * 0.02562 * 4 3 2 26 26 H 1.08006 * 119.93079 * 180.02562 * 5 4 3 27 27 H 1.00908 * 110.99604 * 68.10952 * 11 9 8 28 28 H 1.00893 * 111.00023 * 192.06295 * 11 9 8 29 29 H 0.96998 * 120.00072 * 179.97438 * 15 14 12 30 30 H 0.96700 * 114.00565 * 269.72479 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2932 2.3748 -0.0005 5 6 1.9218 3.6059 -0.0011 6 6 3.3034 3.6804 -0.0019 7 17 4.0876 5.2291 -0.0019 8 6 4.0610 2.5228 -0.0013 9 6 5.5656 2.6070 -0.0016 10 1 5.8725 3.6266 0.2310 11 7 6.1075 1.6897 1.0098 12 6 6.0899 2.2223 -1.3611 13 1 5.4023 1.9443 -2.1462 14 6 7.4473 2.2243 -1.6023 15 7 8.2847 2.5623 -0.6461 16 14 8.0973 1.7468 -3.2873 17 1 6.9590 1.4120 -4.1802 18 1 8.8604 2.8830 -3.8636 19 1 8.9892 0.5666 -3.1577 20 6 3.4360 1.2862 -0.0003 21 8 4.1791 0.1473 0.0058 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 0.2146 2.3193 -0.0005 26 1 1.3333 4.5116 -0.0011 27 1 5.9503 0.7282 0.7471 28 1 7.0882 1.8653 1.1688 29 1 9.2397 2.5633 -0.8157 30 1 4.3941 -0.1869 -0.8757 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260595619.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:02 Heat of formation + Delta-G solvation = -84.303612 kcal Electronic energy + Delta-G solvation = -17334.390426 eV Core-core repulsion = 14348.155610 eV Total energy + Delta-G solvation = -2986.234816 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.39522 -39.11131 -37.82211 -36.64335 -36.18974 -33.33409 -30.75476 -30.48269 -28.07525 -27.72342 -24.67502 -23.28991 -21.81101 -19.39788 -18.66778 -18.37157 -17.54834 -16.92858 -16.69444 -16.34425 -15.88636 -15.30004 -15.02549 -14.77996 -14.35625 -13.86803 -13.53166 -13.37740 -13.21758 -12.89977 -12.65242 -12.61695 -12.24488 -12.14871 -11.87115 -11.53609 -11.43881 -11.10706 -10.57245 -9.58333 -9.08586 -8.94658 -8.07977 -6.32454 0.25330 0.33702 1.36204 1.37302 1.40645 1.50475 2.36458 2.37319 2.62902 3.10050 3.39398 3.88501 4.09092 4.20558 4.45453 4.46704 4.60882 4.74327 4.78664 4.97490 5.03453 5.16184 5.24166 5.58986 5.68023 5.77185 6.10881 6.35501 6.69481 6.95941 7.03396 7.26520 7.45037 8.87368 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.020266 B = 0.008470 C = 0.006867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.305302 B = 3304.879892 C = 4076.625472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.326 6.326 3 C 0.099 3.901 4 C -0.192 4.192 5 C -0.076 4.076 6 C -0.081 4.081 7 Cl -0.076 7.076 8 C -0.040 4.040 9 C 0.243 3.757 10 H 0.033 0.967 11 N -0.844 5.844 12 C -0.546 4.546 13 H 0.047 0.953 14 C 0.024 3.976 15 N -0.915 5.915 16 Si 0.957 3.043 17 H -0.269 1.269 18 H -0.284 1.284 19 H -0.279 1.279 20 C 0.076 3.924 21 O -0.480 6.480 22 H 0.068 0.932 23 H 0.070 0.930 24 H 0.118 0.882 25 H 0.176 0.824 26 H 0.163 0.837 27 H 0.331 0.669 28 H 0.336 0.664 29 H 0.266 0.734 30 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.565 -1.633 -0.684 15.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.240 6.240 3 C 0.053 3.947 4 C -0.211 4.211 5 C -0.094 4.094 6 C -0.108 4.108 7 Cl -0.047 7.047 8 C -0.042 4.042 9 C 0.133 3.867 10 H 0.050 0.950 11 N -0.376 5.376 12 C -0.586 4.586 13 H 0.065 0.935 14 C -0.176 4.176 15 N -0.555 5.555 16 Si 0.783 3.217 17 H -0.193 1.193 18 H -0.210 1.210 19 H -0.205 1.205 20 C 0.030 3.970 21 O -0.289 6.289 22 H 0.086 0.914 23 H 0.088 0.912 24 H 0.136 0.864 25 H 0.193 0.807 26 H 0.181 0.819 27 H 0.145 0.855 28 H 0.149 0.851 29 H 0.075 0.925 30 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -15.802 -1.289 0.472 15.862 hybrid contribution 1.488 -0.200 -2.075 2.562 sum -14.314 -1.489 -1.604 14.480 Atomic orbital electron populations 1.23426 0.76298 1.05684 1.02587 1.86139 1.23584 1.25765 1.88508 1.19556 0.91056 0.86077 0.98044 1.21265 1.01446 0.89879 1.08520 1.21066 0.90905 0.99483 0.97983 1.20756 0.93327 0.85937 1.10825 1.98311 1.81735 1.27450 1.97225 1.20489 0.98248 0.91038 0.94423 1.17838 0.84838 0.94134 0.89883 0.94958 1.59468 1.22209 1.08330 1.47594 1.21869 0.92009 1.46631 0.98089 0.93505 1.25675 0.97099 0.94601 1.00220 1.69897 1.03091 1.48605 1.33907 0.85524 0.78236 0.77726 0.80191 1.19310 1.21010 1.20479 1.17458 0.86600 0.85998 1.06933 1.84738 1.71903 1.38633 1.33637 0.91368 0.91185 0.86352 0.80696 0.81919 0.85464 0.85125 0.92518 0.75516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 9.81 113.37 1.11 1.35 16 2 O -0.33 -9.48 10.28 -79.86 -0.82 -10.31 16 3 C 0.10 3.28 6.70 22.56 0.15 3.43 16 4 C -0.19 -5.16 9.04 22.35 0.20 -4.96 16 5 C -0.08 -2.25 9.82 22.30 0.22 -2.03 16 6 C -0.08 -3.16 6.31 22.32 0.14 -3.02 16 7 Cl -0.08 -2.95 27.05 -2.72 -0.07 -3.02 16 8 C -0.04 -1.78 4.90 -19.76 -0.10 -1.88 16 9 C 0.24 12.52 2.64 43.43 0.11 12.64 16 10 H 0.03 1.83 6.32 -2.39 -0.02 1.82 16 11 N -0.84 -43.33 8.92 -174.96 -1.56 -44.89 16 12 C -0.55 -29.26 8.36 25.60 0.21 -29.05 16 13 H 0.05 2.50 7.74 -2.91 -0.02 2.47 16 14 C 0.02 1.31 5.39 84.65 0.46 1.76 16 15 N -0.92 -51.38 11.67 21.45 0.25 -51.13 16 16 Si 0.96 42.83 29.54 68.60 2.03 44.86 16 17 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 18 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 19 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 20 C 0.08 3.10 6.47 22.57 0.15 3.25 16 21 O -0.48 -19.52 10.14 -79.59 -0.81 -20.32 16 22 H 0.07 0.95 7.66 -2.39 -0.02 0.93 16 23 H 0.07 0.94 7.66 -2.39 -0.02 0.92 16 24 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.18 3.06 6.30 -2.91 -0.02 3.04 16 26 H 0.16 3.65 8.06 -2.91 -0.02 3.62 16 27 H 0.33 16.58 6.30 -89.69 -0.56 16.01 16 28 H 0.34 18.28 7.34 -89.70 -0.66 17.62 16 29 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 30 H 0.39 13.82 9.06 -74.06 -0.67 13.14 16 Total: -1.00 -64.35 271.23 1.00 -63.36 By element: Atomic # 1 Polarization: 40.64 SS G_CDS: -0.68 Total: 39.96 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: 2.66 Total: -18.51 kcal Atomic # 7 Polarization: -94.70 SS G_CDS: -1.31 Total: -96.01 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: -1.63 Total: -30.63 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Atomic # 17 Polarization: -2.95 SS G_CDS: -0.07 Total: -3.02 kcal Total: -64.35 1.00 -63.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260595619.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.945 kcal (2) G-P(sol) polarization free energy of solvation -64.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds