Wall clock time and date at job start Mon Mar 30 2020 04:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30841 * 1 3 3 Si 1.86807 * 120.00156 * 2 1 4 4 H 1.48496 * 109.47175 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46935 * 300.00110 * 3 2 1 6 6 H 1.48500 * 109.46931 * 59.99669 * 3 2 1 7 7 C 1.39895 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99617 * 180.02562 * 7 2 1 9 9 C 1.41516 * 119.99969 * 0.02562 * 7 2 1 10 10 C 1.40929 * 125.83508 * 180.02562 * 9 7 2 11 11 C 1.38277 * 107.55657 * 180.02562 * 10 9 7 12 12 N 1.34262 * 132.14370 * 179.97438 * 11 10 9 13 13 C 1.31139 * 120.83397 * 179.97438 * 12 11 10 14 14 C 1.40345 * 120.29623 * 359.69594 * 13 12 11 15 15 C 1.35546 * 119.48285 * 0.59528 * 14 13 12 16 16 C 1.50703 * 120.40849 * 179.70085 * 15 14 13 17 17 F 1.39905 * 109.47157 * 269.72523 * 16 15 14 18 18 F 1.39900 * 109.47159 * 149.72824 * 16 15 14 19 19 F 1.39897 * 109.47274 * 29.72515 * 16 15 14 20 20 N 1.36531 * 119.18477 * 359.42861 * 15 14 13 21 21 N 1.33217 * 125.83975 * 0.03913 * 9 7 2 22 22 H 0.97002 * 120.00297 * 0.02562 * 1 2 3 23 23 H 1.07998 * 126.22065 * 0.05389 * 10 9 7 24 24 H 1.07998 * 119.85248 * 180.02562 * 13 12 11 25 25 H 1.07998 * 120.25913 * 180.29849 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.7024 1.3464 0.0006 5 1 1.8837 2.3965 -1.2125 6 1 1.8837 2.3965 1.2125 7 6 2.0079 -1.2115 0.0005 8 1 3.0879 -1.2114 0.0010 9 6 1.3003 -2.4371 0.0005 10 6 1.8772 -3.7229 0.0016 11 6 0.8451 -4.6431 0.0006 12 7 0.8353 -5.9857 0.0005 13 6 -0.2957 -6.6496 -0.0001 14 6 -1.5197 -5.9629 0.0059 15 6 -1.5243 -4.6075 -0.0001 16 6 -2.8266 -3.8491 -0.0006 17 9 -3.2291 -3.6147 -1.3199 18 9 -2.6549 -2.6271 0.6585 19 9 -3.8046 -4.6013 0.6587 20 7 -0.3345 -3.9377 0.0001 21 7 -0.0249 -2.5726 -0.0007 22 1 -0.4851 0.8400 -0.0004 23 1 2.9334 -3.9484 0.0033 24 1 -0.2852 -7.7295 0.0003 25 1 -2.4507 -6.5102 0.0103 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261169833.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:03 Heat of formation + Delta-G solvation = -57.584436 kcal Electronic energy + Delta-G solvation = -18969.787429 eV Core-core repulsion = 15341.747009 eV Total energy + Delta-G solvation = -3628.040419 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.047 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -51.34294 -48.87667 -48.76546 -42.67958 -38.63788 -35.59999 -35.06177 -31.90674 -29.86092 -28.36185 -27.90614 -24.28734 -23.70867 -21.94266 -19.96056 -19.71963 -19.34601 -19.22413 -18.29273 -16.88210 -16.71032 -16.59782 -16.06606 -15.62690 -15.57995 -15.22558 -14.95461 -14.90860 -14.77600 -14.60134 -14.02673 -13.44366 -13.43189 -12.94260 -12.91673 -12.78640 -12.27006 -11.87772 -11.48539 -11.25055 -10.46073 -10.00866 -8.73049 -8.58079 -6.67107 -0.55225 0.19805 1.09583 1.35957 1.41394 1.58990 1.62369 2.09974 2.22591 2.30761 2.52825 2.96686 3.14382 3.18810 3.35917 3.66313 4.10090 4.31721 4.50008 4.80695 4.94964 5.16221 5.24190 5.44306 5.78578 6.20009 6.57934 6.75021 6.85447 7.37696 8.38729 Molecular weight = 257.05amu Principal moments of inertia in cm(-1) A = 0.025069 B = 0.008256 C = 0.006461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.629925 B = 3390.489527 C = 4332.623767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.021 3.979 3 Si 1.001 2.999 4 H -0.248 1.248 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.454 4.454 8 H 0.103 0.897 9 C 0.200 3.800 10 C -0.320 4.320 11 C 0.222 3.778 12 N -0.484 5.484 13 C 0.178 3.822 14 C -0.192 4.192 15 C 0.068 3.932 16 C 0.523 3.477 17 F -0.172 7.172 18 F -0.169 7.169 19 F -0.151 7.151 20 N -0.327 5.327 21 N -0.354 5.354 22 H 0.284 0.716 23 H 0.150 0.850 24 H 0.238 0.762 25 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.192 -9.004 0.082 10.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.198 4.198 3 Si 0.820 3.180 4 H -0.171 1.171 5 H -0.192 1.192 6 H -0.193 1.193 7 C -0.491 4.491 8 H 0.121 0.879 9 C 0.056 3.944 10 C -0.352 4.352 11 C 0.002 3.998 12 N -0.197 5.197 13 C -0.007 4.007 14 C -0.217 4.217 15 C -0.054 4.054 16 C 0.468 3.532 17 F -0.154 7.154 18 F -0.151 7.151 19 F -0.132 7.132 20 N -0.096 5.096 21 N -0.189 5.189 22 H 0.094 0.906 23 H 0.168 0.832 24 H 0.254 0.746 25 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -5.494 -8.411 0.083 10.047 hybrid contribution -0.009 0.993 -0.014 0.993 sum -5.503 -7.418 0.069 9.236 Atomic orbital electron populations 1.70028 1.09103 1.30072 1.32714 1.27056 0.95746 1.05110 0.91843 0.84870 0.79434 0.75035 0.78621 1.17054 1.19243 1.19260 1.19375 0.94888 0.88126 1.46717 0.87883 1.19969 0.89980 0.94022 0.90391 1.21232 0.97806 0.90242 1.25928 1.20695 0.86833 0.88807 1.03454 1.68248 1.31651 1.03196 1.16577 1.24205 0.84861 1.02925 0.88737 1.22054 1.04509 0.89186 1.05996 1.20797 0.84594 0.93691 1.06333 1.17746 0.83480 0.77607 0.74402 1.93222 1.91490 1.94681 1.35986 1.93326 1.95365 1.45540 1.80826 1.93218 1.63726 1.75605 1.80687 1.47678 1.04486 1.09841 1.47564 1.79563 1.15023 0.82048 1.42253 0.90560 0.83217 0.74589 0.77173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -44.64 11.92 21.82 0.26 -44.38 15 2 C 0.02 1.10 5.49 85.24 0.47 1.57 15 3 Si 1.00 38.84 29.56 68.60 2.03 40.87 15 4 H -0.25 -9.02 7.11 99.48 0.71 -8.31 15 5 H -0.27 -10.04 7.11 99.48 0.71 -9.33 15 6 H -0.27 -10.05 7.11 99.48 0.71 -9.34 15 7 C -0.45 -25.08 9.39 23.48 0.22 -24.86 15 8 H 0.10 5.22 7.84 -2.91 -0.02 5.20 15 9 C 0.20 11.58 6.73 40.40 0.27 11.85 15 10 C -0.32 -16.68 10.87 22.94 0.25 -16.43 15 11 C 0.22 10.68 7.89 132.81 1.05 11.72 15 12 N -0.48 -18.50 10.49 -192.56 -2.02 -20.52 15 13 C 0.18 4.64 11.27 85.31 0.96 5.60 15 14 C -0.19 -5.14 9.41 22.16 0.21 -4.93 15 15 C 0.07 2.65 6.35 41.21 0.26 2.92 15 16 C 0.52 19.53 3.43 71.24 0.24 19.77 15 17 F -0.17 -6.45 17.30 44.97 0.78 -5.67 15 18 F -0.17 -7.81 16.08 44.97 0.72 -7.09 15 19 F -0.15 -4.38 16.46 44.97 0.74 -3.64 15 20 N -0.33 -16.26 3.85 -180.78 -0.70 -16.95 15 21 N -0.35 -20.66 9.67 -52.16 -0.50 -21.16 15 22 H 0.28 14.50 8.30 -92.71 -0.77 13.73 15 23 H 0.15 7.09 8.06 -2.91 -0.02 7.07 15 24 H 0.24 2.99 8.06 -2.91 -0.02 2.96 15 25 H 0.21 3.31 7.59 -2.91 -0.02 3.29 15 Total: -1.00 -72.57 247.33 6.50 -66.07 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: 1.26 Total: 5.28 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: 3.93 Total: 7.21 kcal Atomic # 7 Polarization: -100.06 SS G_CDS: -2.96 Total: -103.02 kcal Atomic # 9 Polarization: -18.64 SS G_CDS: 2.24 Total: -16.40 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 2.03 Total: 40.87 kcal Total: -72.57 6.50 -66.07 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261169833.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.481 kcal (2) G-P(sol) polarization free energy of solvation -72.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds