Wall clock time and date at job start Mon Mar 30 2020 04:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30858 * 1 3 3 Si 1.86795 * 119.99921 * 2 1 4 4 H 1.48503 * 109.47225 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47094 * 300.00131 * 3 2 1 6 6 H 1.48492 * 109.47218 * 60.00438 * 3 2 1 7 7 C 1.39964 * 120.00306 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00299 * 197.65150 * 7 2 1 9 9 C 1.40383 * 119.99574 * 17.64207 * 7 2 1 10 10 C 1.40735 * 120.98578 * 23.62950 * 9 7 2 11 11 C 1.39111 * 119.19111 * 180.02562 * 10 9 7 12 12 C 1.35721 * 121.25951 * 359.97438 * 11 10 9 13 13 N 1.36267 * 121.82262 * 0.02562 * 12 11 10 14 14 C 1.37220 * 120.63896 * 359.97438 * 13 12 11 15 15 N 1.31536 * 107.12676 * 179.97438 * 14 13 12 16 16 N 1.28708 * 109.56625 * 0.02562 * 15 14 13 17 17 C 1.30819 * 110.22390 * 359.97438 * 16 15 14 18 18 C 1.50697 * 126.30702 * 179.97438 * 17 16 15 19 19 F 1.39908 * 109.46880 * 15.02795 * 18 17 16 20 20 F 1.39897 * 109.47086 * 135.02528 * 18 17 16 21 21 F 1.39901 * 109.47269 * 255.02929 * 18 17 16 22 22 H 0.96999 * 120.00245 * 359.97438 * 1 2 3 23 23 H 1.07998 * 120.40177 * 0.02562 * 10 9 7 24 24 H 1.07994 * 119.37507 * 180.02562 * 11 10 9 25 25 H 1.07998 * 119.08897 * 179.97438 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.7026 1.3464 -0.0006 5 1 1.8837 2.3964 -1.2125 6 1 1.8839 2.3963 1.2125 7 6 2.0085 -1.2121 -0.0005 8 1 3.0503 -1.2342 0.2830 9 6 1.3560 -2.3991 -0.3695 10 6 0.2115 -2.3724 -1.1880 11 6 -0.4058 -3.5711 -1.5304 12 6 0.0751 -4.7617 -1.0908 13 7 1.1795 -4.8414 -0.2966 14 6 1.8481 -3.7063 0.0875 15 7 2.8579 -4.0872 0.8395 16 7 2.8577 -5.3700 0.9439 17 6 1.8571 -5.8783 0.2717 18 6 1.5169 -7.3411 0.1476 19 9 2.2114 -8.0657 1.1224 20 9 0.1408 -7.5168 0.3281 21 9 1.8830 -7.7990 -1.1227 22 1 -0.4850 0.8400 0.0004 23 1 -0.1827 -1.4328 -1.5460 24 1 -1.2840 -3.5542 -2.1587 25 1 -0.4321 -5.6710 -1.3776 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261270017.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:28 Heat of formation + Delta-G solvation = -70.818453 kcal Electronic energy + Delta-G solvation = -18717.864158 eV Core-core repulsion = 15089.249868 eV Total energy + Delta-G solvation = -3628.614289 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.047 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -51.40626 -48.92953 -48.89117 -44.25949 -38.65438 -36.53322 -34.10514 -32.18988 -31.22476 -27.82606 -27.26559 -24.55021 -23.85909 -22.82569 -20.44818 -19.84702 -19.59464 -18.97866 -18.20219 -17.52651 -17.28063 -16.80967 -15.88162 -15.70212 -15.67858 -15.32786 -15.13328 -15.03931 -14.97436 -14.19202 -13.96562 -13.62477 -13.32919 -13.04620 -12.91607 -12.46972 -12.39106 -11.96379 -11.85892 -11.60137 -11.06164 -10.39768 -9.21716 -9.01508 -6.61633 0.11424 0.26385 0.91041 1.38078 1.41705 1.56739 1.58996 1.69143 2.13102 2.30066 2.33131 2.89695 3.09664 3.16450 3.46643 3.73516 4.09051 4.46858 4.57166 4.77876 4.93656 5.16668 5.43967 5.59928 5.83557 6.08719 6.24891 6.39504 6.43496 7.43686 7.91192 Molecular weight = 257.05amu Principal moments of inertia in cm(-1) A = 0.041134 B = 0.006203 C = 0.005649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.546597 B = 4513.131933 C = 4955.767234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.036 3.964 3 Si 0.998 3.002 4 H -0.259 1.259 5 H -0.250 1.250 6 H -0.259 1.259 7 C -0.402 4.402 8 H 0.091 0.909 9 C 0.112 3.888 10 C -0.250 4.250 11 C -0.036 4.036 12 C -0.161 4.161 13 N -0.312 5.312 14 C 0.150 3.850 15 N -0.312 5.312 16 N -0.244 5.244 17 C -0.033 4.033 18 C 0.594 3.406 19 F -0.151 7.151 20 F -0.163 7.163 21 F -0.163 7.163 22 H 0.309 0.691 23 H 0.139 0.861 24 H 0.166 0.834 25 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.899 -2.587 -3.514 5.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.186 4.186 3 Si 0.816 3.184 4 H -0.182 1.182 5 H -0.174 1.174 6 H -0.183 1.183 7 C -0.428 4.428 8 H 0.109 0.891 9 C 0.105 3.895 10 C -0.275 4.275 11 C -0.056 4.056 12 C -0.284 4.284 13 N 0.015 4.985 14 C -0.101 4.101 15 N -0.163 5.163 16 N -0.094 5.094 17 C -0.292 4.292 18 C 0.537 3.463 19 F -0.133 7.133 20 F -0.144 7.144 21 F -0.144 7.144 22 H 0.121 0.879 23 H 0.157 0.843 24 H 0.183 0.817 25 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -1.909 -2.566 -2.606 4.125 hybrid contribution -0.852 0.091 -0.551 1.019 sum -2.761 -2.475 -3.157 4.870 Atomic orbital electron populations 1.69785 1.09105 1.32871 1.26779 1.26987 0.95772 1.04791 0.91097 0.84887 0.79234 0.74364 0.79904 1.18224 1.17387 1.18337 1.19953 0.98760 0.91175 1.32899 0.89075 1.18227 0.93442 0.85885 0.91979 1.21303 1.01385 0.98455 1.06328 1.20710 0.98548 0.89971 0.96361 1.21122 0.95404 1.01578 1.10319 1.42952 1.19714 1.05983 1.29839 1.24307 0.94481 0.90114 1.01171 1.74336 1.19426 1.02690 1.19846 1.73970 1.16082 1.02637 1.16700 1.24022 1.01378 0.91506 1.12249 1.15865 0.74542 0.81446 0.74479 1.93231 1.79178 1.78234 1.62611 1.93229 1.30370 1.95753 1.95052 1.93245 1.91441 1.89742 1.40007 0.87910 0.84341 0.81661 0.81856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -32.46 10.93 21.83 0.24 -32.22 15 2 C 0.04 1.53 5.17 85.26 0.44 1.97 15 3 Si 1.00 31.65 29.59 68.60 2.03 33.68 15 4 H -0.26 -8.45 7.11 99.48 0.71 -7.74 15 5 H -0.25 -7.32 7.11 99.48 0.71 -6.62 15 6 H -0.26 -7.88 7.11 99.48 0.71 -7.17 15 7 C -0.40 -19.35 9.09 23.21 0.21 -19.14 15 8 H 0.09 4.44 7.91 -2.91 -0.02 4.42 15 9 C 0.11 5.57 5.74 -19.86 -0.11 5.46 15 10 C -0.25 -11.16 8.81 23.09 0.20 -10.95 15 11 C -0.04 -1.36 9.90 21.90 0.22 -1.15 15 12 C -0.16 -6.42 10.62 83.42 0.89 -5.54 15 13 N -0.31 -14.47 2.95 -336.90 -0.99 -15.46 15 14 C 0.15 7.72 7.90 135.99 1.07 8.80 15 15 N -0.31 -16.59 12.27 -51.54 -0.63 -17.22 15 16 N -0.24 -12.12 12.03 -49.55 -0.60 -12.72 15 17 C -0.03 -1.48 7.41 137.64 1.02 -0.46 15 18 C 0.59 21.34 3.48 71.23 0.25 21.59 15 19 F -0.15 -5.24 17.18 44.97 0.77 -4.47 15 20 F -0.16 -5.38 16.69 44.97 0.75 -4.63 15 21 F -0.16 -5.46 17.30 44.97 0.78 -4.68 15 22 H 0.31 11.28 8.30 -92.71 -0.77 10.51 15 23 H 0.14 6.10 6.17 -2.91 -0.02 6.08 15 24 H 0.17 4.79 8.06 -2.91 -0.02 4.76 15 25 H 0.16 5.43 7.70 -2.91 -0.02 5.41 15 Total: -1.00 -55.29 246.55 7.80 -47.49 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: 1.26 Total: 9.65 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: 4.19 Total: 0.58 kcal Atomic # 7 Polarization: -75.64 SS G_CDS: -1.98 Total: -77.62 kcal Atomic # 9 Polarization: -16.08 SS G_CDS: 2.30 Total: -13.78 kcal Atomic # 14 Polarization: 31.65 SS G_CDS: 2.03 Total: 33.68 kcal Total: -55.29 7.80 -47.49 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261270017.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.333 kcal (2) G-P(sol) polarization free energy of solvation -55.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds