Wall clock time and date at job start Mon Mar 30 2020 04:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 119.99818 * 2 1 4 4 H 1.48501 * 109.46821 * 239.99797 * 3 2 1 5 5 H 1.48491 * 109.47369 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46851 * 120.00190 * 3 2 1 7 7 C 1.37881 * 119.99660 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99334 * 180.02562 * 7 2 1 9 9 S 1.76193 * 120.00314 * 359.97438 * 7 2 1 10 10 O 1.42105 * 106.40403 * 293.54303 * 9 7 2 11 11 O 1.42098 * 106.40145 * 66.46232 * 9 7 2 12 12 N 1.65606 * 107.21910 * 180.02562 * 9 7 2 13 13 C 1.46500 * 120.00055 * 64.99793 * 12 9 7 14 14 C 1.50702 * 109.46981 * 165.00101 * 13 12 9 15 15 C 1.38888 * 120.33115 * 90.00072 * 14 13 12 16 16 C 1.38297 * 118.50209 * 179.97438 * 15 14 13 17 17 C 1.39140 * 119.09563 * 359.97438 * 16 15 14 18 18 N 1.39003 * 119.70149 * 179.97438 * 17 16 15 19 19 N 1.32393 * 120.59146 * 0.02562 * 17 16 15 20 20 C 1.31975 * 121.62095 * 359.69091 * 19 17 16 21 21 H 0.96997 * 119.99726 * 0.02562 * 1 2 3 22 22 H 0.97002 * 119.99610 * 244.99753 * 12 9 7 23 23 H 1.08996 * 109.46968 * 284.99889 * 13 12 9 24 24 H 1.09002 * 109.46843 * 45.00361 * 13 12 9 25 25 H 1.07996 * 120.74710 * 359.97438 * 15 14 13 26 26 H 1.07993 * 120.44992 * 179.97438 * 16 15 14 27 27 H 0.96997 * 120.00553 * 0.02562 * 18 17 16 28 28 H 0.96999 * 119.99796 * 179.97438 * 18 17 16 29 29 H 1.08000 * 119.57094 * 180.28421 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 16 1.1236 -2.7200 -0.0005 10 8 0.4519 -2.7956 1.2494 11 8 0.4510 -2.7950 -1.2500 12 7 2.2484 -3.9355 -0.0005 13 6 3.1395 -4.1089 1.1493 14 6 3.7948 -5.4641 1.0770 15 6 5.0044 -5.6237 0.4134 16 6 5.5724 -6.8839 0.3708 17 6 4.9168 -7.9429 0.9911 18 7 5.4762 -9.2150 0.9556 19 7 3.7646 -7.7500 1.6140 20 6 3.2023 -6.5576 1.6752 21 1 -0.4849 0.8400 -0.0004 22 1 2.3171 -4.5326 -0.7619 23 1 3.9055 -3.3337 1.1354 24 1 2.5623 -4.0331 2.0709 25 1 5.4904 -4.7827 -0.0586 26 1 6.5120 -7.0439 -0.1370 27 1 6.3200 -9.3613 0.5001 28 1 5.0230 -9.9562 1.3869 29 1 2.2639 -6.4370 2.1961 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308385077.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:53 Heat of formation + Delta-G solvation = -90.119181 kcal Electronic energy + Delta-G solvation = -16556.551882 eV Core-core repulsion = 13604.401342 eV Total energy + Delta-G solvation = -2952.150540 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.062 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.13476 -37.40312 -36.86259 -36.08144 -35.16525 -34.81270 -33.12090 -30.46861 -28.20874 -26.15203 -24.50722 -22.66177 -20.98984 -19.31575 -18.42803 -18.32832 -18.15820 -17.35510 -16.69188 -16.14306 -15.83475 -15.61285 -15.30248 -15.01129 -14.63561 -14.22417 -13.92187 -13.84017 -13.32652 -12.97403 -12.94214 -12.45561 -12.37425 -12.29389 -12.15834 -11.59501 -11.19028 -10.97803 -10.68445 -10.48058 -10.07828 -8.74566 -8.69489 -7.43258 0.20534 0.41670 0.64115 1.38359 1.40194 1.52931 2.24957 2.62849 2.67275 2.89564 3.21126 3.73770 3.76802 3.91211 4.13590 4.20408 4.37512 4.57209 4.70975 4.76771 4.96305 5.09956 5.17776 5.35605 5.48476 5.71356 5.95251 6.41723 6.43638 6.58021 6.83120 7.37740 8.25388 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.040307 B = 0.005114 C = 0.004789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.499280 B = 5474.383775 C = 5845.442812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.068 3.932 3 Si 0.991 3.009 4 H -0.251 1.251 5 H -0.268 1.268 6 H -0.248 1.248 7 C -1.037 5.037 8 H 0.125 0.875 9 S 2.721 3.279 10 O -1.043 7.043 11 O -1.048 7.048 12 N -1.117 6.117 13 C 0.173 3.827 14 C -0.210 4.210 15 C -0.020 4.020 16 C -0.236 4.236 17 C 0.389 3.611 18 N -0.839 5.839 19 N -0.570 5.570 20 C 0.151 3.849 21 H 0.298 0.702 22 H 0.412 0.588 23 H 0.083 0.917 24 H 0.072 0.928 25 H 0.156 0.844 26 H 0.162 0.838 27 H 0.421 0.579 28 H 0.407 0.593 29 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.352 -11.751 1.173 19.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.145 4.145 3 Si 0.810 3.190 4 H -0.175 1.175 5 H -0.192 1.192 6 H -0.172 1.172 7 C -1.171 5.171 8 H 0.143 0.857 9 S 2.822 3.178 10 O -1.033 7.033 11 O -1.038 7.038 12 N -0.876 5.876 13 C 0.047 3.953 14 C -0.217 4.217 15 C -0.046 4.046 16 C -0.260 4.260 17 C 0.150 3.850 18 N -0.384 5.384 19 N -0.289 5.289 20 C -0.007 4.007 21 H 0.108 0.892 22 H 0.246 0.754 23 H 0.101 0.899 24 H 0.090 0.910 25 H 0.173 0.827 26 H 0.179 0.821 27 H 0.254 0.746 28 H 0.237 0.763 29 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 13.804 -12.398 1.737 18.636 hybrid contribution 0.842 1.117 -0.688 1.559 sum 14.646 -11.281 1.049 18.516 Atomic orbital electron populations 1.70002 1.08846 1.32305 1.41578 1.26042 0.95353 1.05472 0.87622 0.85143 0.78703 0.74453 0.80750 1.17459 1.19210 1.17175 1.30884 1.07348 1.12365 1.66484 0.85724 0.99847 0.72590 0.73975 0.71408 1.93303 1.74563 1.88261 1.47127 1.93308 1.74967 1.88463 1.47056 1.55470 1.54998 1.49486 1.27694 1.19951 0.92722 0.94410 0.88178 1.20495 0.98749 0.96028 1.06427 1.21572 0.92541 0.97933 0.92557 1.21620 1.04342 0.92197 1.07855 1.18787 0.88778 0.87805 0.89646 1.42170 1.27479 1.05789 1.62942 1.67218 1.12124 1.25696 1.23861 1.22464 0.97871 0.86441 0.93897 0.89221 0.75438 0.89854 0.91007 0.82652 0.82077 0.74647 0.76348 0.82780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.48 13.19 21.45 0.28 -53.19 15 2 C 0.07 3.73 5.46 84.65 0.46 4.19 15 3 Si 0.99 40.67 29.54 68.60 2.03 42.70 15 4 H -0.25 -9.65 7.11 99.48 0.71 -8.94 15 5 H -0.27 -10.45 7.11 99.48 0.71 -9.75 15 6 H -0.25 -9.46 7.11 99.48 0.71 -8.76 15 7 C -1.04 -55.79 9.72 67.74 0.66 -55.13 15 8 H 0.12 5.88 7.81 -2.91 -0.02 5.86 15 9 S 2.72 144.91 5.02 -56.49 -0.28 144.62 15 10 O -1.04 -61.81 17.49 -128.00 -2.24 -64.05 15 11 O -1.05 -62.93 18.02 -128.00 -2.31 -65.24 15 12 N -1.12 -43.42 5.99 -190.79 -1.14 -44.56 15 13 C 0.17 5.65 6.37 85.63 0.55 6.20 15 14 C -0.21 -5.76 5.29 -19.76 -0.10 -5.87 15 15 C -0.02 -0.44 9.85 22.44 0.22 -0.21 15 16 C -0.24 -4.43 9.94 22.50 0.22 -4.21 15 17 C 0.39 8.38 7.75 133.07 1.03 9.41 15 18 N -0.84 -11.24 9.07 -55.43 -0.50 -11.75 15 19 N -0.57 -15.49 10.39 -193.27 -2.01 -17.50 15 20 C 0.15 4.29 10.85 84.62 0.92 5.21 15 21 H 0.30 16.03 8.31 -92.71 -0.77 15.26 15 22 H 0.41 14.28 8.65 -96.74 -0.84 13.44 15 23 H 0.08 2.44 8.09 -2.39 -0.02 2.42 15 24 H 0.07 2.49 7.70 -2.39 -0.02 2.47 15 25 H 0.16 2.74 8.06 -2.91 -0.02 2.72 15 26 H 0.16 1.90 8.06 -2.91 -0.02 1.88 15 27 H 0.42 2.95 8.82 -92.71 -0.82 2.13 15 28 H 0.41 4.97 8.95 -92.71 -0.83 4.14 15 29 H 0.15 4.30 8.06 -2.91 -0.02 4.28 15 Total: -1.00 -78.75 277.76 -3.48 -82.23 By element: Atomic # 1 Polarization: 28.42 SS G_CDS: -1.27 Total: 27.15 kcal Atomic # 6 Polarization: -44.37 SS G_CDS: 3.95 Total: -40.41 kcal Atomic # 7 Polarization: -123.63 SS G_CDS: -3.37 Total: -127.00 kcal Atomic # 8 Polarization: -124.75 SS G_CDS: -4.54 Total: -129.29 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Atomic # 16 Polarization: 144.91 SS G_CDS: -0.28 Total: 144.62 kcal Total: -78.75 -3.48 -82.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308385077.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.889 kcal (2) G-P(sol) polarization free energy of solvation -78.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds