Wall clock time and date at job start Mon Mar 30 2020 04:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86804 * 119.99802 * 2 1 4 4 H 1.48499 * 109.46825 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47303 * 300.00549 * 3 2 1 6 6 H 1.48496 * 109.46855 * 60.00978 * 3 2 1 7 7 C 1.38798 * 119.99791 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99870 * 179.97438 * 7 2 1 9 9 S 1.76199 * 120.00456 * 359.97438 * 7 2 1 10 10 C 1.80991 * 100.00084 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46959 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00208 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99920 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00028 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.47397 * 180.02562 * 14 13 11 16 16 C 1.50695 * 109.47105 * 179.97438 * 15 14 13 17 17 N 1.31070 * 126.66395 * 304.94855 * 16 15 14 18 18 N 1.28838 * 107.99206 * 180.02562 * 17 16 15 19 19 N 1.28737 * 109.39886 * 0.02562 * 18 17 16 20 20 N 1.29021 * 108.80997 * 359.97438 * 19 18 17 21 21 H 0.96996 * 126.44238 * 180.26211 * 20 19 18 22 22 H 0.97001 * 119.99601 * 359.97438 * 1 2 3 23 23 H 1.09006 * 109.47216 * 60.00373 * 10 9 7 24 24 H 1.08999 * 109.47406 * 300.00442 * 10 9 7 25 25 H 0.97000 * 120.00201 * 359.97438 * 13 11 10 26 26 H 1.08997 * 109.47926 * 59.99445 * 14 13 11 27 27 H 1.09005 * 109.46380 * 299.99336 * 14 13 11 28 28 H 1.08997 * 109.47331 * 59.98718 * 15 14 13 29 29 H 1.09000 * 109.46268 * 299.99276 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8917 2.3963 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9874 -5.3027 0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8442 -6.3431 0.0007 14 6 2.3305 -7.7151 0.0008 15 6 3.5025 -8.6986 0.0022 16 6 2.9740 -10.1098 0.0029 17 7 2.1350 -10.6309 0.8645 18 7 1.9288 -11.8572 0.5275 19 7 2.6150 -12.1321 -0.5265 20 7 3.2727 -11.0802 -0.8808 21 1 3.8675 -11.0022 -1.6430 22 1 -0.4849 0.8401 0.0004 23 1 3.1245 -3.7313 0.8895 24 1 3.1245 -3.7313 -0.8905 25 1 3.8009 -6.1835 0.0004 26 1 1.7222 -7.8754 -0.8893 27 1 1.7215 -7.8749 0.8906 28 1 4.1105 -8.5381 0.8925 29 1 4.1117 -8.5388 -0.8874 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308803649.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:17 Heat of formation + Delta-G solvation = 69.959248 kcal Electronic energy + Delta-G solvation = -15584.540915 eV Core-core repulsion = 12671.624648 eV Total energy + Delta-G solvation = -2912.916267 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.069 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.64222 -39.29705 -35.96662 -35.06259 -33.44269 -32.45635 -30.65281 -28.71951 -25.55415 -24.63780 -24.53781 -22.30248 -20.60473 -19.29634 -17.92156 -17.39434 -16.48940 -16.02877 -15.78903 -15.13284 -14.83013 -14.51693 -13.97014 -13.52944 -13.25584 -12.72088 -12.62457 -12.56303 -12.28590 -11.93190 -11.71359 -11.54378 -11.09385 -11.05146 -10.79200 -10.52299 -9.84137 -9.51770 -9.11660 -9.04137 -8.26771 -6.53592 -6.24566 -3.95587 0.75402 1.80407 1.86121 2.90907 3.00961 3.19590 3.23858 3.28933 3.47316 3.68322 3.95724 4.17261 4.37958 4.58780 4.72193 4.98464 5.09258 5.10828 5.12258 5.46930 5.56060 5.76170 5.83259 5.97259 6.07767 6.42347 7.54851 7.57371 8.15748 8.32343 8.50826 9.20891 10.82903 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.081563 B = 0.003059 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 343.212597 B = 9151.393474 C = 9373.728811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.533 3.467 12 O -0.512 6.512 13 N -0.741 5.741 14 C 0.127 3.873 15 C -0.050 4.050 16 C 0.200 3.800 17 N -0.291 5.291 18 N -0.066 5.066 19 N -0.089 5.089 20 N -0.404 5.404 21 H 0.457 0.543 22 H 0.268 0.732 23 H 0.091 0.909 24 H 0.090 0.910 25 H 0.399 0.601 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.114 0.886 29 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.819 -17.312 -2.940 21.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.684 4.684 8 H 0.092 0.908 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.319 3.681 12 O -0.385 6.385 13 N -0.396 5.396 14 C 0.002 3.998 15 C -0.091 4.091 16 C -0.081 4.081 17 N -0.141 5.141 18 N -0.061 5.061 19 N -0.075 5.075 20 N -0.135 5.135 21 H 0.305 0.695 22 H 0.078 0.922 23 H 0.109 0.891 24 H 0.109 0.891 25 H 0.233 0.767 26 H 0.088 0.912 27 H 0.103 0.897 28 H 0.132 0.868 29 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 9.739 -18.635 -2.285 21.151 hybrid contribution 3.402 1.937 -0.981 4.035 sum 13.141 -16.698 -3.266 21.498 Atomic orbital electron populations 1.70029 1.05966 1.27400 1.46819 1.25000 0.95027 0.99063 0.94504 0.86109 0.79547 0.81862 0.77926 1.19622 1.20575 1.20540 1.22902 0.94931 0.91604 1.58989 0.90839 1.85457 1.04807 0.96389 1.96722 1.23527 1.06677 0.95131 1.05021 1.20333 0.86487 0.86211 0.75094 1.90732 1.15362 1.85489 1.46922 1.45909 1.10067 1.04997 1.78673 1.21118 0.94381 0.80214 1.04110 1.20393 0.98987 0.83740 1.05982 1.25931 0.97483 0.95780 0.88871 1.75118 1.14084 1.02435 1.22429 1.78705 1.15396 1.07078 1.04957 1.78901 1.06672 1.10205 1.11770 1.46264 1.34503 1.08072 1.24704 0.69487 0.92193 0.89053 0.89143 0.76675 0.91199 0.89744 0.86752 0.88210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.84 13.22 55.49 0.73 -25.10 15 2 C 0.07 2.06 5.49 -17.43 -0.10 1.96 15 3 Si 0.92 21.00 29.55 -169.99 -5.02 15.98 15 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 15 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 15 6 H -0.28 -6.31 7.11 56.52 0.40 -5.90 15 7 C -0.54 -14.93 9.50 30.94 0.29 -14.63 15 8 H 0.07 1.93 7.80 -52.48 -0.41 1.52 15 9 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 15 10 C -0.15 -2.88 6.16 36.01 0.22 -2.66 15 11 C 0.53 9.18 7.85 -10.98 -0.09 9.10 15 12 O -0.51 -11.23 15.86 5.56 0.09 -11.14 15 13 N -0.74 -8.07 5.56 -60.29 -0.33 -8.41 15 14 C 0.13 1.21 5.65 -4.04 -0.02 1.19 15 15 C -0.05 -0.24 5.96 -27.88 -0.17 -0.40 15 16 C 0.20 1.51 7.68 -155.43 -1.19 0.31 15 17 N -0.29 -3.42 12.34 32.70 0.40 -3.01 15 18 N -0.07 -0.83 13.43 60.35 0.81 -0.02 15 19 N -0.09 -0.88 13.48 60.35 0.81 -0.07 15 20 N -0.40 -2.37 7.03 32.67 0.23 -2.14 15 21 H 0.46 0.49 8.96 -190.93 -1.71 -1.22 15 22 H 0.27 7.41 8.31 -40.82 -0.34 7.07 15 23 H 0.09 1.57 8.14 -51.91 -0.42 1.15 15 24 H 0.09 1.54 8.14 -51.92 -0.42 1.12 15 25 H 0.40 2.82 8.47 -40.82 -0.35 2.47 15 26 H 0.07 0.75 8.14 -51.93 -0.42 0.32 15 27 H 0.08 1.00 8.14 -51.93 -0.42 0.58 15 28 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 15 29 H 0.10 0.14 8.14 -51.93 -0.42 -0.29 15 LS Contribution 283.05 15.07 4.27 4.27 Total: -1.00 -37.87 283.05 -5.41 -43.29 By element: Atomic # 1 Polarization: -0.56 SS G_CDS: -4.14 Total: -4.69 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -1.05 Total: -5.13 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: 2.66 Total: -38.75 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.09 Total: -11.14 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -37.87 -5.41 -43.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308803649.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.246 kcal (2) G-P(sol) polarization free energy of solvation -37.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds