Wall clock time and date at job start Mon Mar 30 2020 04:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86804 * 119.99802 * 2 1 4 4 H 1.48499 * 109.46825 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47303 * 300.00549 * 3 2 1 6 6 H 1.48496 * 109.46855 * 60.00978 * 3 2 1 7 7 C 1.38798 * 119.99791 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99870 * 179.97438 * 7 2 1 9 9 S 1.76199 * 120.00456 * 359.97438 * 7 2 1 10 10 C 1.80991 * 100.00084 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46959 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00208 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99920 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00028 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.47397 * 180.02562 * 14 13 11 16 16 C 1.50695 * 109.47105 * 179.97438 * 15 14 13 17 17 N 1.31070 * 126.66395 * 304.94855 * 16 15 14 18 18 N 1.28838 * 107.99206 * 180.02562 * 17 16 15 19 19 N 1.28737 * 109.39886 * 0.02562 * 18 17 16 20 20 N 1.29021 * 108.80997 * 359.97438 * 19 18 17 21 21 H 0.96996 * 126.44238 * 180.26211 * 20 19 18 22 22 H 0.97001 * 119.99601 * 359.97438 * 1 2 3 23 23 H 1.09006 * 109.47216 * 60.00373 * 10 9 7 24 24 H 1.08999 * 109.47406 * 300.00442 * 10 9 7 25 25 H 0.97000 * 120.00201 * 359.97438 * 13 11 10 26 26 H 1.08997 * 109.47926 * 59.99445 * 14 13 11 27 27 H 1.09005 * 109.46380 * 299.99336 * 14 13 11 28 28 H 1.08997 * 109.47331 * 59.98718 * 15 14 13 29 29 H 1.09000 * 109.46268 * 299.99276 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8917 2.3963 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9874 -5.3027 0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8442 -6.3431 0.0007 14 6 2.3305 -7.7151 0.0008 15 6 3.5025 -8.6986 0.0022 16 6 2.9740 -10.1098 0.0029 17 7 2.1350 -10.6309 0.8645 18 7 1.9288 -11.8572 0.5275 19 7 2.6150 -12.1321 -0.5265 20 7 3.2727 -11.0802 -0.8808 21 1 3.8675 -11.0022 -1.6430 22 1 -0.4849 0.8401 0.0004 23 1 3.1245 -3.7313 0.8895 24 1 3.1245 -3.7313 -0.8905 25 1 3.8009 -6.1835 0.0004 26 1 1.7222 -7.8754 -0.8893 27 1 1.7215 -7.8749 0.8906 28 1 4.1105 -8.5381 0.8925 29 1 4.1117 -8.5388 -0.8874 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308803649.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:17 Heat of formation + Delta-G solvation = 38.218642 kcal Electronic energy + Delta-G solvation = -15585.917291 eV Core-core repulsion = 12671.624648 eV Total energy + Delta-G solvation = -2914.292643 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.069 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -45.32896 -40.59862 -36.88253 -35.75762 -34.56460 -34.36729 -31.74188 -29.84452 -27.65166 -25.40194 -25.33976 -22.96209 -21.85885 -20.00823 -19.76839 -18.11464 -17.83514 -17.12740 -16.85577 -16.78861 -16.11109 -15.60402 -15.45683 -14.74226 -14.45890 -14.16726 -13.60793 -13.43990 -13.19487 -13.13214 -12.90120 -12.64513 -12.59580 -12.54917 -12.26303 -11.69038 -11.23261 -11.13854 -10.96256 -10.22812 -10.14006 -8.64162 -8.32579 -6.10390 0.12485 1.05288 1.27124 1.38307 1.43567 1.52192 1.61794 1.64438 2.26491 2.31154 3.02090 3.02216 3.30915 3.39492 3.79947 4.03322 4.07391 4.14026 4.37106 4.43573 4.52636 4.57121 4.83371 4.95316 5.38360 5.44871 5.62918 6.22463 6.54261 7.09225 7.29072 7.44540 8.76853 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.081563 B = 0.003059 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 343.212597 B = 9151.393474 C = 9373.728811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.012 3.988 3 Si 0.999 3.001 4 H -0.254 1.254 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.543 4.543 8 H 0.086 0.914 9 S -0.161 6.161 10 C -0.128 4.128 11 C 0.533 3.467 12 O -0.568 6.568 13 N -0.706 5.706 14 C 0.126 3.874 15 C -0.035 4.035 16 C 0.211 3.789 17 N -0.333 5.333 18 N -0.106 5.106 19 N -0.096 5.096 20 N -0.378 5.378 21 H 0.479 0.521 22 H 0.270 0.730 23 H 0.114 0.886 24 H 0.116 0.884 25 H 0.424 0.576 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.138 0.862 29 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.451 -17.233 -3.678 24.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.193 4.193 3 Si 0.821 3.179 4 H -0.177 1.177 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.691 4.691 8 H 0.104 0.896 9 S 0.066 5.934 10 C -0.279 4.279 11 C 0.319 3.681 12 O -0.446 6.446 13 N -0.362 5.362 14 C 0.001 3.999 15 C -0.076 4.076 16 C -0.070 4.070 17 N -0.183 5.183 18 N -0.101 5.101 19 N -0.084 5.084 20 N -0.113 5.113 21 H 0.332 0.668 22 H 0.079 0.921 23 H 0.132 0.868 24 H 0.134 0.866 25 H 0.263 0.737 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.156 0.844 29 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 13.461 -18.597 -3.045 23.159 hybrid contribution 2.353 1.790 -0.794 3.062 sum 15.815 -16.806 -3.839 23.394 Atomic orbital electron populations 1.70202 1.08058 1.28482 1.48234 1.26139 0.95926 1.03392 0.93828 0.84898 0.78741 0.76341 0.77921 1.17737 1.20112 1.20177 1.23249 0.95422 0.91865 1.58522 0.89594 1.85687 1.11032 0.99578 1.97069 1.23364 1.03348 0.93909 1.07250 1.20100 0.86170 0.86823 0.75016 1.90724 1.17847 1.86117 1.49960 1.45488 1.10623 1.04233 1.75856 1.21124 0.96278 0.80110 1.02409 1.20481 0.97160 0.80266 1.09664 1.26227 0.96191 0.96645 0.87919 1.75032 1.16086 1.02639 1.24573 1.78694 1.17113 1.07942 1.06334 1.78798 1.06747 1.11510 1.11311 1.46180 1.33656 1.06744 1.24709 0.66784 0.92091 0.86814 0.86597 0.73750 0.92314 0.92447 0.84364 0.83260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.60 13.22 21.65 0.29 -55.31 15 2 C 0.01 0.65 5.49 84.86 0.47 1.12 15 3 Si 1.00 42.61 29.55 68.60 2.03 44.64 15 4 H -0.25 -9.97 7.11 99.48 0.71 -9.26 15 5 H -0.28 -11.46 7.11 99.48 0.71 -10.75 15 6 H -0.28 -11.53 7.11 99.48 0.71 -10.82 15 7 C -0.54 -30.09 9.50 67.95 0.65 -29.45 15 8 H 0.09 4.36 7.80 -2.91 -0.02 4.34 15 9 S -0.16 -8.68 20.57 -56.49 -1.16 -9.85 15 10 C -0.13 -4.59 6.16 71.24 0.44 -4.15 15 11 C 0.53 17.71 7.85 87.66 0.69 18.39 15 12 O -0.57 -25.42 15.86 -3.02 -0.05 -25.47 15 13 N -0.71 -13.20 5.56 -463.05 -2.57 -15.77 15 14 C 0.13 2.13 5.65 86.38 0.49 2.61 15 15 C -0.04 -0.19 5.96 29.85 0.18 -0.01 15 16 C 0.21 2.65 7.68 138.13 1.06 3.72 15 17 N -0.33 -7.65 12.34 -50.45 -0.62 -8.27 15 18 N -0.11 -2.66 13.43 37.01 0.50 -2.16 15 19 N -0.10 -1.79 13.48 37.02 0.50 -1.29 15 20 N -0.38 -3.43 7.03 -50.55 -0.36 -3.78 15 21 H 0.48 -0.77 8.96 -220.41 -1.98 -2.75 15 22 H 0.27 15.25 8.31 -92.71 -0.77 14.48 15 23 H 0.11 3.60 8.14 -2.39 -0.02 3.58 15 24 H 0.12 3.59 8.14 -2.40 -0.02 3.57 15 25 H 0.42 3.86 8.47 -92.71 -0.79 3.08 15 26 H 0.06 1.17 8.14 -2.39 -0.02 1.15 15 27 H 0.06 1.34 8.14 -2.38 -0.02 1.32 15 28 H 0.14 0.24 8.14 -2.39 -0.02 0.22 15 29 H 0.15 -0.59 8.14 -2.39 -0.02 -0.61 15 Total: -1.00 -88.46 283.05 0.96 -87.49 By element: Atomic # 1 Polarization: -0.91 SS G_CDS: -1.55 Total: -2.46 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: 3.96 Total: -7.76 kcal Atomic # 7 Polarization: -84.32 SS G_CDS: -2.27 Total: -86.59 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -0.05 Total: -25.47 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.16 Total: -9.85 kcal Total: -88.46 0.96 -87.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308803649.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.713 kcal (2) G-P(sol) polarization free energy of solvation -88.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds