Wall clock time and date at job start Mon Mar 30 2020 04:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99925 * 2 1 4 4 H 1.48500 * 109.46808 * 239.99356 * 3 2 1 5 5 H 1.48497 * 109.46976 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47261 * 119.99878 * 3 2 1 7 7 C 1.37877 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99846 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99945 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.46987 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99736 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.47161 * 179.97438 * 11 10 9 13 13 C 1.38282 * 119.91954 * 89.99690 * 12 11 10 14 14 C 1.38551 * 120.01495 * 179.97438 * 13 12 11 15 15 O 1.35995 * 120.06265 * 180.02562 * 14 13 12 16 16 C 1.39145 * 119.86815 * 0.30328 * 14 13 12 17 17 O 1.36024 * 120.07490 * 179.72715 * 16 14 13 18 18 C 1.38620 * 119.84892 * 359.42301 * 16 14 13 19 19 Cl 1.73601 * 120.01443 * 180.32077 * 18 16 14 20 20 C 1.38206 * 119.92622 * 269.97843 * 12 11 10 21 21 H 0.97004 * 119.99880 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.47226 * 59.99593 * 9 7 2 23 23 H 1.08998 * 109.46788 * 299.99758 * 9 7 2 24 24 H 1.00901 * 111.00177 * 56.04591 * 10 9 7 25 25 H 1.09000 * 109.47420 * 59.99534 * 11 10 9 26 26 H 1.09001 * 109.46922 * 299.99873 * 11 10 9 27 27 H 1.07995 * 119.98994 * 0.02562 * 13 12 11 28 28 H 0.96700 * 114.00111 * 90.00393 * 15 14 13 29 29 H 0.96703 * 114.00668 * 89.99572 * 17 16 14 30 30 H 1.08004 * 119.93248 * 359.97438 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6156 0.0005 11 6 1.5054 -4.9070 -0.0001 12 6 2.5149 -6.0259 -0.0007 13 6 2.9771 -6.5386 1.1976 14 6 3.9048 -7.5677 1.1993 15 8 4.3596 -8.0729 2.3771 16 6 4.3746 -8.0792 -0.0064 17 8 5.2895 -9.0857 -0.0096 18 6 3.9033 -7.5650 -1.2044 19 17 4.4802 -8.2056 -2.7112 20 6 2.9764 -6.5375 -1.1988 21 1 -0.4850 0.8401 -0.0004 22 1 0.6247 -2.5571 -0.8896 23 1 0.6241 -2.5567 0.8903 24 1 2.8406 -3.5486 0.7819 25 1 0.8808 -4.9812 -0.8902 26 1 0.8803 -4.9817 0.8897 27 1 2.6142 -6.1373 2.1322 28 1 3.8350 -8.8106 2.7174 29 1 4.9005 -9.9710 -0.0131 30 1 2.6125 -6.1349 -2.1326 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308961262.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:13 Heat of formation + Delta-G solvation = -96.685267 kcal Electronic energy + Delta-G solvation = -16124.573650 eV Core-core repulsion = 13137.801925 eV Total energy + Delta-G solvation = -2986.771724 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.33055 -38.45304 -38.18146 -37.39383 -36.44545 -34.49064 -31.62255 -30.87192 -28.62400 -25.88398 -23.97926 -23.51008 -22.47848 -19.88223 -18.94121 -18.43634 -17.75748 -17.12065 -16.70123 -16.17618 -16.02490 -15.58738 -15.23867 -14.96817 -14.47840 -13.84951 -13.73756 -13.56653 -13.16775 -13.03589 -12.75513 -12.59192 -12.39116 -12.22933 -12.05057 -11.88071 -11.37092 -11.28038 -10.65245 -9.76362 -9.63853 -9.13259 -8.22213 -6.32975 -0.08471 0.00285 1.00961 1.42466 1.45377 1.53435 2.28144 2.41862 2.92447 3.11500 3.15036 3.58060 3.85767 3.97635 4.14096 4.22853 4.55419 4.66824 4.74297 4.90717 5.02573 5.07818 5.27183 5.41142 5.48963 5.61075 6.01267 6.40696 6.54755 6.67766 6.86305 6.87160 7.37811 8.88858 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.028646 B = 0.004157 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.199157 B = 6734.012132 C = 7147.052409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.970 3.030 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.538 4.538 8 H 0.062 0.938 9 C 0.208 3.792 10 N -0.686 5.686 11 C 0.097 3.903 12 C -0.055 4.055 13 C -0.121 4.121 14 C 0.097 3.903 15 O -0.491 6.491 16 C 0.086 3.914 17 O -0.485 6.485 18 C -0.055 4.055 19 Cl -0.052 7.052 20 C -0.090 4.090 21 H 0.266 0.734 22 H 0.005 0.995 23 H -0.033 1.033 24 H 0.335 0.665 25 H 0.078 0.922 26 H 0.042 0.958 27 H 0.146 0.854 28 H 0.412 0.588 29 H 0.408 0.592 30 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.640 -20.465 1.153 21.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.194 4.194 3 Si 0.794 3.206 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.577 4.577 8 H 0.080 0.920 9 C 0.081 3.919 10 N -0.316 5.316 11 C -0.031 4.031 12 C -0.056 4.056 13 C -0.140 4.140 14 C 0.051 3.949 15 O -0.304 6.304 16 C 0.039 3.961 17 O -0.298 6.298 18 C -0.083 4.083 19 Cl -0.023 7.023 20 C -0.109 4.109 21 H 0.074 0.926 22 H 0.023 0.977 23 H -0.015 1.015 24 H 0.152 0.848 25 H 0.096 0.904 26 H 0.060 0.940 27 H 0.164 0.836 28 H 0.271 0.729 29 H 0.267 0.733 30 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.442 -19.539 0.285 20.576 hybrid contribution -0.864 0.113 0.726 1.135 sum 5.578 -19.426 1.011 20.236 Atomic orbital electron populations 1.70066 1.07669 1.28087 1.51389 1.25885 0.95757 1.03168 0.94545 0.85429 0.78162 0.77889 0.79085 1.19521 1.20678 1.19201 1.21511 0.93772 0.91546 1.50837 0.91988 1.19232 0.90542 0.88424 0.93723 1.60596 1.20484 1.01001 1.49549 1.20876 0.93578 0.87099 1.01585 1.19612 0.97729 0.95995 0.92303 1.21487 0.96578 0.96907 0.99025 1.18423 0.94927 0.96460 0.85074 1.84885 1.56674 1.54567 1.34301 1.18451 0.93377 0.94212 0.90089 1.84900 1.31474 1.17319 1.96063 1.21241 0.99838 0.99962 0.87220 1.98365 1.87995 1.85629 1.30339 1.20983 0.95989 0.94528 0.99431 0.92560 0.97662 1.01485 0.84775 0.90408 0.93999 0.83580 0.72889 0.73321 0.84100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.68 13.29 21.45 0.28 -55.40 16 2 C 0.00 0.28 5.46 84.65 0.46 0.74 16 3 Si 0.97 44.18 29.54 68.60 2.03 46.21 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.54 -30.58 9.32 25.60 0.24 -30.34 16 8 H 0.06 3.45 7.81 -2.91 -0.02 3.42 16 9 C 0.21 10.92 5.44 85.56 0.47 11.39 16 10 N -0.69 -28.82 6.48 -521.98 -3.38 -32.20 16 11 C 0.10 3.21 5.81 85.56 0.50 3.71 16 12 C -0.06 -1.53 5.39 -19.86 -0.11 -1.64 16 13 C -0.12 -2.93 9.63 22.36 0.22 -2.71 16 14 C 0.10 2.17 6.72 22.56 0.15 2.32 16 15 O -0.49 -9.25 13.29 -79.63 -1.06 -10.31 16 16 C 0.09 1.95 6.71 22.58 0.15 2.10 16 17 O -0.49 -9.44 12.75 -79.96 -1.02 -10.46 16 18 C -0.06 -1.35 6.33 22.39 0.14 -1.21 16 19 Cl -0.05 -1.19 28.50 -2.72 -0.08 -1.26 16 20 C -0.09 -2.39 9.47 22.29 0.21 -2.18 16 21 H 0.27 14.92 8.31 -92.70 -0.77 14.15 16 22 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 23 H -0.03 -1.81 8.14 -2.39 -0.02 -1.83 16 24 H 0.34 13.61 8.72 -89.69 -0.78 12.83 16 25 H 0.08 2.56 8.08 -2.39 -0.02 2.54 16 26 H 0.04 1.32 8.08 -2.39 -0.02 1.30 16 27 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 28 H 0.41 3.02 9.06 -74.06 -0.67 2.35 16 29 H 0.41 3.63 9.07 -74.06 -0.67 2.96 16 30 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -68.64 286.97 -1.72 -70.36 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -0.92 Total: 10.88 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: 2.43 Total: -17.82 kcal Atomic # 7 Polarization: -84.50 SS G_CDS: -3.10 Total: -87.60 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -2.08 Total: -20.77 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.08 Total: -1.26 kcal Total: -68.64 -1.72 -70.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308961262.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.325 kcal (2) G-P(sol) polarization free energy of solvation -68.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds