Wall clock time and date at job start Mon Mar 30 2020 04:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38013 * 120.30754 * 2 1 4 4 N 1.32040 * 120.99375 * 179.72013 * 3 2 1 5 5 C 1.32259 * 121.69476 * 0.52966 * 4 3 2 6 6 N 1.39289 * 119.74243 * 179.75113 * 5 4 3 7 7 S 1.65596 * 120.00229 * 359.72098 * 6 5 4 8 8 O 1.42096 * 106.40099 * 311.46237 * 7 6 5 9 9 O 1.42099 * 106.40170 * 178.53970 * 7 6 5 10 10 C 1.76199 * 107.21576 * 65.00196 * 7 6 5 11 11 H 1.08009 * 120.00150 * 359.72175 * 10 7 6 12 12 C 1.37876 * 120.00184 * 179.97438 * 10 7 6 13 13 N 1.31514 * 119.99769 * 0.02562 * 12 10 7 14 14 Si 1.86800 * 120.00300 * 180.02562 * 12 10 7 15 15 H 1.48501 * 109.47057 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47389 * 120.00056 * 14 12 10 17 17 H 1.48504 * 109.47102 * 240.00405 * 14 12 10 18 18 C 1.39721 * 120.51211 * 359.47494 * 5 4 3 19 19 N 1.40003 * 120.51081 * 180.27917 * 18 5 4 20 20 C 1.38836 * 120.30866 * 179.97438 * 2 1 3 21 21 H 1.09001 * 109.47265 * 270.02216 * 1 2 3 22 22 H 1.08994 * 109.47414 * 30.01824 * 1 2 3 23 23 H 1.09002 * 109.47219 * 150.02161 * 1 2 3 24 24 H 1.08000 * 119.50133 * 359.97438 * 3 2 1 25 25 H 0.97001 * 119.99276 * 179.72385 * 6 5 4 26 26 H 0.97005 * 120.00032 * 179.97438 * 13 12 10 27 27 H 0.96998 * 120.00236 * 359.97438 * 19 18 5 28 28 H 0.97008 * 119.99689 * 179.97438 * 19 18 5 29 29 H 1.07999 * 120.78053 * 0.04523 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2035 1.1915 0.0000 4 7 3.5238 1.2073 0.0055 5 6 4.2321 0.0904 0.0009 6 7 5.6235 0.1546 0.0018 7 16 6.3846 1.6253 0.0017 8 8 5.7681 2.3960 -1.0206 9 8 7.7793 1.3553 0.0374 10 6 5.9916 2.4159 1.5265 11 1 5.3528 1.9206 2.2428 12 6 6.4953 3.6692 1.8030 13 7 7.2687 4.2747 0.9285 14 14 6.0793 4.5072 3.4199 15 1 5.1979 3.6226 4.2235 16 1 7.3300 4.7775 4.1736 17 1 5.3787 5.7880 3.1477 18 6 3.5955 -1.1533 0.0009 19 7 4.3453 -2.3356 0.0018 20 6 2.2076 -1.1986 0.0005 21 1 -0.3634 0.0004 1.0277 22 1 -0.3634 0.8898 -0.5141 23 1 -0.3634 -0.8902 -0.5135 24 1 1.6603 2.1250 -0.0004 25 1 6.1466 -0.6623 0.0024 26 1 7.6228 5.1567 1.1229 27 1 5.3145 -2.2953 0.0021 28 1 3.8956 -3.1952 0.0022 29 1 1.6855 -2.1440 0.0002 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308985200.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:01 Heat of formation + Delta-G solvation = -53.219777 kcal Electronic energy + Delta-G solvation = -17258.140696 eV Core-core repulsion = 14307.590234 eV Total energy + Delta-G solvation = -2950.550462 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.062 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.05306 -35.46838 -35.20962 -34.33740 -33.88575 -32.98271 -31.81852 -28.91167 -26.11433 -25.98040 -23.21457 -21.35359 -19.10297 -18.03114 -17.84769 -16.48772 -16.16750 -15.70633 -14.95112 -14.78046 -14.43407 -13.97010 -13.84069 -13.37408 -12.92557 -12.70790 -12.37817 -11.95230 -11.70852 -11.23126 -11.15015 -11.05214 -10.69466 -10.57400 -10.49400 -10.18419 -10.08380 -9.15117 -8.89879 -8.74929 -8.54835 -7.02863 -6.59170 -5.16423 1.66236 1.80762 2.24215 3.13105 3.20286 3.28861 3.88862 4.07373 4.29305 4.30885 4.75119 4.93400 5.17100 5.29536 5.39450 5.46344 5.71346 5.81387 5.93407 5.98764 6.07859 6.45404 6.54906 6.69109 7.00670 7.31373 7.43468 7.73947 7.78748 8.10141 8.61180 9.00551 10.35171 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.023455 B = 0.008307 C = 0.006952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.507837 B = 3369.904512 C = 4026.933686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.143 4.143 3 C 0.090 3.910 4 N -0.456 5.456 5 C 0.340 3.660 6 N -1.048 6.048 7 S 2.705 3.295 8 O -0.975 6.975 9 O -1.005 7.005 10 C -0.991 4.991 11 H 0.100 0.900 12 C 0.133 3.867 13 N -0.850 5.850 14 Si 0.922 3.078 15 H -0.264 1.264 16 H -0.273 1.273 17 H -0.271 1.271 18 C 0.127 3.873 19 N -0.877 5.877 20 C -0.134 4.134 21 H 0.066 0.934 22 H 0.067 0.933 23 H 0.060 0.940 24 H 0.155 0.845 25 H 0.410 0.590 26 H 0.289 0.711 27 H 0.395 0.605 28 H 0.397 0.603 29 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.630 -11.198 0.346 15.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.147 4.147 3 C -0.068 4.068 4 N -0.169 5.169 5 C 0.101 3.899 6 N -0.790 5.790 7 S 2.806 3.194 8 O -0.965 6.965 9 O -0.995 6.995 10 C -1.126 5.126 11 H 0.118 0.882 12 C -0.084 4.084 13 N -0.480 5.480 14 Si 0.747 3.253 15 H -0.188 1.188 16 H -0.198 1.198 17 H -0.196 1.196 18 C 0.018 3.982 19 N -0.421 5.421 20 C -0.165 4.165 21 H 0.085 0.915 22 H 0.086 0.914 23 H 0.079 0.921 24 H 0.172 0.828 25 H 0.243 0.757 26 H 0.099 0.901 27 H 0.224 0.776 28 H 0.226 0.774 29 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.569 -9.690 -0.453 13.626 hybrid contribution -0.367 -1.063 1.407 1.802 sum -9.936 -10.754 0.954 14.672 Atomic orbital electron populations 1.20582 0.90729 1.02423 1.01938 1.20463 0.96849 0.93348 1.04069 1.22124 0.87990 0.97363 0.99335 1.67240 1.08872 1.27196 1.13571 1.17631 0.84809 0.88207 0.99292 1.54236 1.10249 1.28391 1.86172 1.00919 0.71544 0.70166 0.76757 1.93383 1.76923 1.66362 1.59807 1.93397 1.32283 1.84194 1.89625 1.30248 1.43377 1.13472 1.25487 0.88156 1.24705 0.90400 0.95163 0.98094 1.69905 1.27619 1.15640 1.34884 0.86111 0.78861 0.79173 0.81193 1.18765 1.19836 1.19623 1.18258 0.91701 0.86572 1.01638 1.42180 1.08275 1.04704 1.86917 1.20579 0.90831 0.98395 1.06706 0.91540 0.91450 0.92069 0.82803 0.75693 0.90102 0.77616 0.77427 0.85396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.98 10.03 36.01 0.36 -0.62 15 2 C -0.14 -2.01 5.90 -104.48 -0.62 -2.62 15 3 C 0.09 1.58 10.84 -17.54 -0.19 1.39 15 4 N -0.46 -10.06 8.34 -12.24 -0.10 -10.16 15 5 C 0.34 6.89 7.36 -154.64 -1.14 5.75 15 6 N -1.05 -22.12 5.84 31.28 0.18 -21.94 15 7 S 2.71 74.62 4.66 -107.50 -0.50 74.12 15 8 O -0.98 -29.79 16.90 -57.17 -0.97 -30.76 15 9 O -1.00 -29.70 18.02 -57.17 -1.03 -30.73 15 10 C -0.99 -28.40 9.33 30.60 0.29 -28.12 15 11 H 0.10 2.73 7.81 -52.48 -0.41 2.32 15 12 C 0.13 3.83 5.46 -17.82 -0.10 3.74 15 13 N -0.85 -25.59 13.19 55.43 0.73 -24.86 15 14 Si 0.92 21.40 29.54 -169.99 -5.02 16.37 15 15 H -0.26 -5.96 7.11 56.52 0.40 -5.55 15 16 H -0.27 -6.06 7.11 56.52 0.40 -5.66 15 17 H -0.27 -6.06 7.11 56.52 0.40 -5.66 15 18 C 0.13 1.99 6.81 -83.34 -0.57 1.42 15 19 N -0.88 -10.08 9.09 32.62 0.30 -9.78 15 20 C -0.13 -1.82 9.72 -39.13 -0.38 -2.20 15 21 H 0.07 0.59 8.14 -51.93 -0.42 0.17 15 22 H 0.07 0.61 8.09 -51.93 -0.42 0.19 15 23 H 0.06 0.51 8.09 -51.93 -0.42 0.09 15 24 H 0.15 2.34 8.06 -52.49 -0.42 1.92 15 25 H 0.41 6.95 7.00 -34.47 -0.24 6.71 15 26 H 0.29 7.80 8.31 -40.82 -0.34 7.46 15 27 H 0.40 4.25 7.02 -40.82 -0.29 3.96 15 28 H 0.40 3.30 8.86 -40.82 -0.36 2.94 15 29 H 0.13 1.30 8.06 -52.49 -0.42 0.88 15 LS Contribution 271.80 15.07 4.10 4.10 Total: -1.00 -37.95 271.80 -7.20 -45.15 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -2.54 Total: 9.75 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: -2.34 Total: -21.25 kcal Atomic # 7 Polarization: -67.85 SS G_CDS: 1.11 Total: -66.74 kcal Atomic # 8 Polarization: -59.49 SS G_CDS: -2.00 Total: -61.49 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 74.62 SS G_CDS: -0.50 Total: 74.12 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -37.95 -7.20 -45.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308985200.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.071 kcal (2) G-P(sol) polarization free energy of solvation -37.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds