Wall clock time and date at job start Mon Mar 30 2020 05:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00040 * 2 1 4 4 H 1.48495 * 109.47452 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47099 * 300.00068 * 3 2 1 6 6 H 1.48503 * 109.46845 * 59.99747 * 3 2 1 7 7 C 1.37883 * 120.00472 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00029 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99377 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.46502 * 174.87381 * 9 7 2 11 11 C 1.46891 * 111.00566 * 299.71065 * 10 9 7 12 12 C 1.53002 * 109.47373 * 290.07805 * 11 10 9 13 13 O 1.42906 * 109.47060 * 67.07421 * 12 11 10 14 14 C 1.46908 * 110.99718 * 175.75353 * 10 9 7 15 15 C 1.50699 * 109.47068 * 190.00018 * 14 10 9 16 16 C 1.33327 * 125.95007 * 90.00623 * 15 14 10 17 17 N 1.32126 * 114.57935 * 179.97438 * 16 15 14 18 18 C 1.29686 * 116.86248 * 359.97438 * 17 16 15 19 19 N 1.38617 * 124.94649 * 179.97438 * 18 17 16 20 20 S 1.70963 * 110.10463 * 0.24900 * 18 17 16 21 21 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.47475 * 54.87561 * 9 7 2 23 23 H 1.08999 * 109.47112 * 294.87451 * 9 7 2 24 24 H 1.09006 * 109.46971 * 50.07605 * 11 10 9 25 25 H 1.08998 * 109.47751 * 170.07751 * 11 10 9 26 26 H 1.08994 * 109.47885 * 187.07494 * 12 11 10 27 27 H 1.08999 * 109.46782 * 307.07982 * 12 11 10 28 28 H 0.96699 * 114.00272 * 180.02562 * 13 12 11 29 29 H 1.09005 * 109.46687 * 70.00157 * 14 10 9 30 30 H 1.08998 * 109.47382 * 310.00554 * 14 10 9 31 31 H 1.07996 * 122.71003 * 0.02562 * 16 15 14 32 32 H 0.96996 * 119.99867 * 0.03018 * 19 18 17 33 33 H 0.96996 * 119.99916 * 179.75762 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2010 -3.6129 -0.1226 11 6 2.9656 -3.5170 -1.3732 12 6 2.0423 -3.8048 -2.5588 13 8 1.0758 -2.7586 -2.6748 14 6 1.5113 -4.9063 -0.0250 15 6 2.5296 -6.0111 0.0916 16 6 3.0361 -6.4920 1.2272 17 7 3.9164 -7.4644 1.0680 18 6 4.1756 -7.8265 -0.1500 19 7 5.0682 -8.8246 -0.5088 20 16 3.2617 -6.8886 -1.2491 21 1 -0.4850 0.8400 0.0004 22 1 0.5577 -2.5184 -0.8402 23 1 0.6947 -2.5975 0.9327 24 1 3.3792 -2.5131 -1.4701 25 1 3.7771 -4.2446 -1.3597 26 1 2.6319 -3.8578 -3.4740 27 1 1.5321 -4.7548 -2.3997 28 1 0.4554 -2.8757 -3.4072 29 1 0.9055 -5.0632 -0.9176 30 1 0.8687 -4.9100 0.8554 31 1 2.7494 -6.1176 2.1988 32 1 5.5533 -9.3105 0.1763 33 1 5.2047 -9.0397 -1.4447 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309005036.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:33 Heat of formation + Delta-G solvation = 16.370271 kcal Electronic energy + Delta-G solvation = -17281.366282 eV Core-core repulsion = 14469.666566 eV Total energy + Delta-G solvation = -2811.699716 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.094 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.42203 -37.82554 -35.17161 -34.38708 -32.45966 -30.11204 -28.51329 -26.47621 -24.70273 -23.49049 -22.43494 -20.22532 -19.27455 -18.48007 -16.90607 -16.23721 -16.19466 -15.77380 -15.13794 -14.95410 -14.41062 -14.17685 -13.81714 -13.27404 -12.81073 -12.27658 -11.91217 -11.62230 -11.46744 -11.19911 -10.89968 -10.72052 -10.64302 -10.50382 -10.18721 -9.77248 -9.44838 -9.25404 -9.00902 -8.93466 -8.25887 -7.69717 -7.01441 -5.85074 -3.82285 1.20539 1.28858 1.96704 3.21289 3.40087 3.46066 3.47028 3.51881 4.56607 4.88541 5.07777 5.19142 5.41079 5.52222 5.54796 5.69659 5.84124 5.96711 6.16832 6.29674 6.36550 6.40894 6.82363 6.87429 7.20443 7.41298 7.81427 7.93071 8.13961 8.18430 8.29428 8.38688 8.71825 9.23269 9.78485 11.26488 Molecular weight = 257.09amu Principal moments of inertia in cm(-1) A = 0.035324 B = 0.005420 C = 0.005183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.463954 B = 5164.587752 C = 5400.706076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.058 3.942 3 Si 0.890 3.110 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.491 4.491 8 H 0.057 0.943 9 C 0.181 3.819 10 N -0.526 5.526 11 C 0.059 3.941 12 C 0.039 3.961 13 O -0.528 6.528 14 C 0.127 3.873 15 C -0.219 4.219 16 C 0.082 3.918 17 N -0.548 5.548 18 C 0.301 3.699 19 N -0.826 5.826 20 S 0.078 5.922 21 H 0.256 0.744 22 H 0.041 0.959 23 H 0.017 0.983 24 H 0.094 0.906 25 H 0.065 0.935 26 H 0.032 0.968 27 H 0.033 0.967 28 H 0.353 0.647 29 H 0.040 0.960 30 H 0.088 0.912 31 H 0.175 0.825 32 H 0.408 0.592 33 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.762 -16.175 -5.488 18.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.142 4.142 3 Si 0.719 3.281 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.530 4.530 8 H 0.075 0.925 9 C 0.057 3.943 10 N -0.250 5.250 11 C -0.070 4.070 12 C -0.040 4.040 13 O -0.331 6.331 14 C -0.004 4.004 15 C -0.342 4.342 16 C -0.067 4.067 17 N -0.273 5.273 18 C -0.072 4.072 19 N -0.379 5.379 20 S 0.324 5.676 21 H 0.066 0.934 22 H 0.058 0.942 23 H 0.035 0.965 24 H 0.113 0.887 25 H 0.083 0.917 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.198 0.802 29 H 0.058 0.942 30 H 0.106 0.894 31 H 0.192 0.808 32 H 0.239 0.761 33 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 6.440 -15.988 -5.156 17.991 hybrid contribution -0.290 0.615 -0.467 0.825 sum 6.150 -15.373 -5.623 17.487 Atomic orbital electron populations 1.69963 1.05879 1.26035 1.51947 1.24867 0.94732 0.98765 0.95860 0.86567 0.80089 0.84179 0.77251 1.19935 1.21343 1.21310 1.21071 0.92988 0.90096 1.48802 0.92501 1.20064 0.90824 0.86370 0.97080 1.62391 1.28506 1.01223 1.32862 1.22236 0.95067 1.03245 0.86470 1.22957 0.91786 0.90252 0.99053 1.87129 1.45813 1.46840 1.53314 1.20448 0.91489 0.87115 1.01343 1.25465 1.09397 1.06472 0.92843 1.21272 0.93314 0.92661 0.99445 1.66410 1.21923 1.19529 1.19486 1.23503 0.96174 0.95084 0.92418 1.41422 1.46647 1.39036 1.10814 1.83845 1.39978 1.31945 1.11850 0.93417 0.94153 0.96476 0.88729 0.91696 0.94993 0.94899 0.80213 0.94217 0.89413 0.80792 0.76101 0.75914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 22.28 29.54 -169.99 -5.02 17.25 16 4 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.49 -13.99 8.21 -34.44 -0.28 -14.28 16 8 H 0.06 1.63 6.98 -52.49 -0.37 1.27 16 9 C 0.18 4.71 4.29 -4.97 -0.02 4.69 16 10 N -0.53 -11.34 4.74 -237.51 -1.13 -12.47 16 11 C 0.06 1.16 5.34 -3.83 -0.02 1.14 16 12 C 0.04 0.68 6.81 37.16 0.25 0.94 16 13 O -0.53 -10.63 10.54 -35.23 -0.37 -11.00 16 14 C 0.13 2.28 5.14 -4.97 -0.03 2.25 16 15 C -0.22 -3.50 5.30 -36.02 -0.19 -3.69 16 16 C 0.08 1.30 11.24 -19.14 -0.22 1.09 16 17 N -0.55 -8.54 10.60 -15.21 -0.16 -8.70 16 18 C 0.30 3.95 8.58 -87.67 -0.75 3.20 16 19 N -0.83 -7.24 9.08 29.77 0.27 -6.97 16 20 S 0.08 1.02 21.91 -107.50 -2.36 -1.34 16 21 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 22 H 0.04 1.12 5.29 -51.93 -0.27 0.84 16 23 H 0.02 0.48 8.05 -51.93 -0.42 0.06 16 24 H 0.09 2.14 6.33 -51.93 -0.33 1.81 16 25 H 0.06 1.16 6.52 -51.93 -0.34 0.83 16 26 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.03 0.53 5.70 -51.93 -0.30 0.24 16 28 H 0.35 5.35 9.12 45.56 0.42 5.77 16 29 H 0.04 0.70 5.71 -51.93 -0.30 0.41 16 30 H 0.09 1.56 8.01 -51.93 -0.42 1.14 16 31 H 0.18 2.58 8.06 -52.49 -0.42 2.16 16 32 H 0.41 3.05 8.95 -40.82 -0.37 2.68 16 33 H 0.41 2.43 8.95 -40.82 -0.37 2.07 16 LS Contribution 285.49 15.07 4.30 4.30 Total: -1.00 -33.69 285.49 -8.11 -41.80 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -3.03 Total: 6.52 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -1.35 Total: -3.07 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: -0.28 Total: -54.47 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: -0.37 Total: -11.00 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -2.36 Total: -1.34 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -33.69 -8.11 -41.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309005036.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.170 kcal (2) G-P(sol) polarization free energy of solvation -33.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds