Wall clock time and date at job start Mon Mar 30 2020 04:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38325 * 119.86481 * 2 1 4 4 C 1.38837 * 120.32583 * 179.97438 * 3 2 1 5 5 N 1.40027 * 119.96474 * 179.97438 * 4 3 2 6 6 C 1.38833 * 120.05904 * 359.97438 * 4 3 2 7 7 F 1.35103 * 120.13191 * 180.02562 * 6 4 3 8 8 C 1.39851 * 119.73631 * 0.02562 * 6 4 3 9 9 C 1.47375 * 120.16229 * 179.97438 * 8 6 4 10 10 O 1.21543 * 119.99831 * 90.00427 * 9 8 6 11 11 O 1.34768 * 119.99975 * 269.72520 * 9 8 6 12 12 C 1.34869 * 116.99657 * 180.27332 * 11 9 8 13 13 H 1.08003 * 120.00073 * 0.02562 * 12 11 9 14 14 C 1.38800 * 119.99898 * 179.97438 * 12 11 9 15 15 N 1.31421 * 120.00093 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99865 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47099 * 90.00404 * 16 14 12 18 18 H 1.48499 * 109.46984 * 210.00188 * 16 14 12 19 19 H 1.48495 * 109.47185 * 330.00419 * 16 14 12 20 20 C 1.38138 * 119.86830 * 180.22699 * 2 1 3 21 21 F 1.35099 * 120.03010 * 0.02562 * 20 2 1 22 22 H 1.09003 * 109.46815 * 90.00413 * 1 2 3 23 23 H 1.08996 * 109.47190 * 210.00458 * 1 2 3 24 24 H 1.08998 * 109.47269 * 330.00651 * 1 2 3 25 25 H 1.07995 * 119.83796 * 359.94753 * 3 2 1 26 26 H 0.97008 * 119.99766 * 179.97438 * 5 4 3 27 27 H 0.96999 * 120.00747 * 359.97438 * 5 4 3 28 28 H 0.96993 * 120.00408 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1996 0.0000 4 6 3.5841 1.2107 0.0005 5 7 4.2737 2.4294 0.0000 6 6 4.2892 0.0148 0.0016 7 9 5.6402 0.0239 0.0027 8 6 3.5953 -1.1995 0.0016 9 6 4.3343 -2.4746 0.0022 10 8 4.6385 -3.0002 1.0550 11 8 4.6678 -3.0607 -1.1647 12 6 5.3384 -4.2286 -1.0935 13 1 5.5838 -4.6527 -0.1310 14 6 5.7124 -4.8862 -2.2572 15 7 5.4134 -4.3705 -3.4284 16 14 6.6406 -6.5043 -2.1586 17 1 5.6721 -7.6296 -2.1292 18 1 7.5232 -6.6417 -3.3449 19 1 7.4644 -6.5279 -0.9233 20 6 2.1949 -1.1979 -0.0047 21 9 1.5174 -2.3667 -0.0099 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3634 0.8900 0.5137 25 1 1.6510 2.1320 -0.0009 26 1 5.2438 2.4378 0.0007 27 1 3.7816 3.2653 -0.0011 28 1 5.6743 -4.8302 -4.2417 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309196920.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:37 Heat of formation + Delta-G solvation = -144.247110 kcal Electronic energy + Delta-G solvation = -18871.224157 eV Core-core repulsion = 15330.593317 eV Total energy + Delta-G solvation = -3540.630841 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.065 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.61788 -48.50973 -39.35799 -38.51332 -35.23241 -34.60913 -32.40346 -32.03662 -28.78707 -26.57447 -25.74564 -23.85349 -21.49206 -20.30488 -18.01586 -17.85124 -17.73167 -17.16794 -16.10115 -15.76989 -15.56353 -14.95377 -14.88073 -14.69494 -14.34580 -14.07057 -14.02862 -13.32981 -12.99561 -12.68806 -12.25506 -12.01923 -11.96778 -11.72055 -11.43509 -11.16848 -10.46116 -10.42065 -10.24146 -9.84089 -9.22954 -8.63450 -8.58867 -7.46239 -6.42333 -4.09552 1.00897 1.29024 3.04450 3.19206 3.25374 3.34501 3.44212 3.64746 3.92578 4.11290 4.40960 4.56454 4.70325 4.99482 5.13567 5.21788 5.57599 5.60783 5.79234 5.87133 5.97048 6.16037 6.24501 6.55211 6.80588 7.27404 7.37541 7.59801 7.90868 8.60293 9.04754 9.77427 10.75025 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.026326 B = 0.006631 C = 0.005866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.323727 B = 4221.302239 C = 4772.506002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.084 4.084 3 C -0.142 4.142 4 C 0.180 3.820 5 N -0.872 5.872 6 C 0.077 3.923 7 F -0.125 7.125 8 C -0.086 4.086 9 C 0.439 3.561 10 O -0.534 6.534 11 O -0.196 6.196 12 C -0.383 4.383 13 H 0.099 0.901 14 C 0.044 3.956 15 N -0.859 5.859 16 Si 0.947 3.053 17 H -0.272 1.272 18 H -0.277 1.277 19 H -0.265 1.265 20 C 0.103 3.897 21 F -0.124 7.124 22 H 0.077 0.923 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.142 0.858 26 H 0.403 0.597 27 H 0.402 0.598 28 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.136 13.432 4.030 15.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.086 4.086 3 C -0.165 4.165 4 C 0.075 3.925 5 N -0.413 5.413 6 C 0.053 3.947 7 F -0.103 7.103 8 C -0.090 4.090 9 C 0.284 3.716 10 O -0.432 6.432 11 O -0.102 6.102 12 C -0.459 4.459 13 H 0.116 0.884 14 C -0.161 4.161 15 N -0.495 5.495 16 Si 0.771 3.229 17 H -0.197 1.197 18 H -0.202 1.202 19 H -0.189 1.189 20 C 0.081 3.919 21 F -0.102 7.102 22 H 0.096 0.904 23 H 0.092 0.908 24 H 0.091 0.909 25 H 0.159 0.841 26 H 0.232 0.768 27 H 0.231 0.769 28 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.007 13.147 4.041 15.436 hybrid contribution 0.864 -0.632 -0.039 1.071 sum -6.143 12.516 4.002 14.505 Atomic orbital electron populations 1.20717 0.89451 1.03420 1.03118 1.19547 0.97083 0.90641 1.01309 1.20159 0.90522 0.97887 1.07950 1.17477 0.91641 0.85306 0.98074 1.42255 1.09374 1.04082 1.85631 1.16672 0.77234 0.91074 1.09701 1.91502 1.27683 1.96990 1.94164 1.19179 0.92550 0.92573 1.04699 1.20154 0.82039 0.85154 0.84250 1.90683 1.55093 1.64433 1.32944 1.84008 1.61399 1.34981 1.29786 1.21327 1.33724 0.95654 0.95190 0.88374 1.25394 0.97141 0.99596 0.93934 1.69997 1.43360 1.38680 0.97467 0.85627 0.79039 0.79898 0.78366 1.19706 1.20213 1.18940 1.16878 0.87213 0.81738 1.06032 1.91518 1.79151 1.45723 1.93838 0.90400 0.90812 0.90868 0.84075 0.76755 0.76889 0.91894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 9.82 36.01 0.35 -0.81 15 2 C -0.08 -1.20 5.88 -104.63 -0.62 -1.81 15 3 C -0.14 -1.73 9.53 -39.33 -0.37 -2.11 15 4 C 0.18 2.55 6.76 -83.67 -0.57 1.98 15 5 N -0.87 -8.83 9.10 32.45 0.30 -8.53 15 6 C 0.08 1.48 7.30 -38.76 -0.28 1.20 15 7 F -0.12 -2.54 16.20 2.25 0.04 -2.51 15 8 C -0.09 -1.93 5.76 -104.90 -0.60 -2.53 15 9 C 0.44 12.21 6.61 34.45 0.23 12.44 15 10 O -0.53 -15.89 16.36 -19.30 -0.32 -16.20 15 11 O -0.20 -6.07 9.75 -21.78 -0.21 -6.28 15 12 C -0.38 -11.90 9.65 30.94 0.30 -11.60 15 13 H 0.10 3.04 6.86 -52.48 -0.36 2.68 15 14 C 0.04 1.29 5.50 -17.52 -0.10 1.19 15 15 N -0.86 -25.87 13.67 55.49 0.76 -25.11 15 16 Si 0.95 21.82 29.55 -169.99 -5.02 16.80 15 17 H -0.27 -6.06 7.11 56.52 0.40 -5.66 15 18 H -0.28 -6.09 7.11 56.52 0.40 -5.69 15 19 H -0.27 -6.00 7.11 56.52 0.40 -5.60 15 20 C 0.10 1.99 7.23 -38.94 -0.28 1.71 15 21 F -0.12 -2.58 16.02 2.25 0.04 -2.54 15 22 H 0.08 0.75 8.14 -51.93 -0.42 0.32 15 23 H 0.07 0.81 7.63 -51.93 -0.40 0.41 15 24 H 0.07 0.56 8.08 -51.93 -0.42 0.14 15 25 H 0.14 1.14 8.06 -52.49 -0.42 0.72 15 26 H 0.40 3.98 8.31 -40.82 -0.34 3.64 15 27 H 0.40 2.68 8.84 -40.82 -0.36 2.32 15 28 H 0.27 7.41 8.31 -40.82 -0.34 7.07 15 LS Contribution 270.23 15.07 4.07 4.07 Total: -1.00 -36.11 270.23 -4.15 -40.26 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: -1.86 Total: 0.38 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -1.94 Total: -0.33 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: 1.05 Total: -33.65 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.53 Total: -22.48 kcal Atomic # 9 Polarization: -5.12 SS G_CDS: 0.07 Total: -5.05 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -36.11 -4.15 -40.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309196920.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.987 kcal (2) G-P(sol) polarization free energy of solvation -36.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds