Wall clock time and date at job start Mon Mar 30 2020 04:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99754 * 2 1 4 4 H 1.48500 * 109.47619 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.47309 * 120.00113 * 3 2 1 6 6 H 1.48508 * 109.47448 * 240.00422 * 3 2 1 7 7 C 1.37878 * 120.00240 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99730 * 185.61550 * 7 2 1 9 9 C 1.50701 * 119.99783 * 5.61018 * 7 2 1 10 10 H 1.08997 * 109.47382 * 35.28449 * 9 7 2 11 11 N 1.46897 * 109.47082 * 275.28273 * 9 7 2 12 12 C 1.50700 * 109.47027 * 155.28339 * 9 7 2 13 13 C 1.38045 * 120.07401 * 74.20737 * 12 9 7 14 14 F 1.35097 * 119.96384 * 0.02562 * 13 12 9 15 15 C 1.38848 * 120.07452 * 179.77203 * 13 12 9 16 16 F 1.35099 * 119.88569 * 180.25363 * 15 13 12 17 17 C 1.38627 * 120.23085 * 0.51153 * 15 13 12 18 18 C 1.37825 * 120.15007 * 359.74089 * 17 15 13 19 19 C 1.39680 * 120.07811 * 254.48905 * 12 9 7 20 20 C 1.47606 * 120.11258 * 359.97438 * 19 12 9 21 21 O 1.21485 * 119.99830 * 35.54020 * 20 19 12 22 22 O 1.34731 * 119.99989 * 215.54063 * 20 19 12 23 23 H 0.97000 * 119.99400 * 175.06311 * 1 2 3 24 24 H 1.00904 * 110.99989 * 307.35310 * 11 9 7 25 25 H 1.00904 * 111.00370 * 71.30857 * 11 9 7 26 26 H 1.07997 * 119.92212 * 179.72496 * 17 15 13 27 27 H 1.08000 * 120.03813 * 180.02562 * 18 17 15 28 28 H 0.96698 * 117.00195 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6966 -1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0807 -1.1962 0.0910 9 6 1.2565 -2.4960 -0.1287 10 1 0.4017 -2.3602 -0.7912 11 7 0.7866 -2.9231 1.1959 12 6 2.1725 -3.5475 -0.6999 13 6 3.1609 -4.1049 0.0863 14 9 3.3069 -3.7077 1.3693 15 6 4.0019 -5.0772 -0.4385 16 9 4.9646 -5.6238 0.3358 17 6 3.8605 -5.4851 -1.7559 18 6 2.8803 -4.9311 -2.5507 19 6 2.0272 -3.9562 -2.0276 20 6 0.9760 -3.3600 -2.8751 21 8 0.6830 -2.1882 -2.7452 22 8 0.3415 -4.1153 -3.7927 23 1 -0.4849 -0.8370 -0.0723 24 1 1.5455 -2.9404 1.8606 25 1 0.0349 -2.3333 1.5205 26 1 4.5202 -6.2385 -2.1602 27 1 2.7715 -5.2506 -3.5766 28 1 -0.3392 -3.6807 -4.3244 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309260204.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:20 Heat of formation + Delta-G solvation = -152.894057 kcal Electronic energy + Delta-G solvation = -19440.233566 eV Core-core repulsion = 15899.227766 eV Total energy + Delta-G solvation = -3541.005801 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.065 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.15698 -48.15964 -40.15682 -38.16376 -35.83338 -34.89531 -31.67645 -30.56237 -29.85009 -25.75481 -24.29018 -23.34100 -21.36230 -20.79195 -18.05772 -17.61480 -17.27020 -17.06468 -16.23102 -15.94862 -15.72674 -15.01389 -14.68068 -14.48794 -13.98738 -13.81881 -13.77631 -13.15434 -12.88172 -12.53214 -12.40196 -11.85930 -11.71800 -11.41321 -11.11923 -10.80316 -10.43746 -10.15458 -9.63215 -9.41360 -8.76029 -8.55090 -8.41027 -7.39134 -6.45900 -4.22430 0.79548 1.35336 2.66857 3.22471 3.39022 3.42225 3.59694 3.71868 4.05109 4.45754 4.59728 4.84916 5.07502 5.26175 5.29200 5.32777 5.89372 5.98841 6.07101 6.18023 6.27141 6.44709 6.75346 6.93012 7.21602 7.81220 8.19682 8.25786 8.37263 8.65120 8.71900 9.49114 10.89051 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.018282 B = 0.009886 C = 0.007530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.214199 B = 2831.556969 C = 3717.765488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.037 3.963 3 Si 1.069 2.931 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.613 4.613 8 H 0.048 0.952 9 C 0.210 3.790 10 H 0.081 0.919 11 N -0.864 5.864 12 C 0.028 3.972 13 C 0.069 3.931 14 F -0.115 7.115 15 C 0.089 3.911 16 F -0.131 7.131 17 C -0.164 4.164 18 C -0.051 4.051 19 C -0.115 4.115 20 C 0.515 3.485 21 O -0.460 6.460 22 O -0.520 6.520 23 H 0.270 0.730 24 H 0.330 0.670 25 H 0.335 0.665 26 H 0.146 0.854 27 H 0.144 0.856 28 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.335 -9.938 -5.735 12.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.170 4.170 3 Si 0.896 3.104 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.652 4.652 8 H 0.067 0.933 9 C 0.101 3.899 10 H 0.099 0.901 11 N -0.394 5.394 12 C 0.026 3.974 13 C 0.048 3.952 14 F -0.093 7.093 15 C 0.069 3.931 16 F -0.109 7.109 17 C -0.183 4.183 18 C -0.070 4.070 19 C -0.117 4.117 20 C 0.356 3.644 21 O -0.345 6.345 22 O -0.333 6.333 23 H 0.082 0.918 24 H 0.144 0.856 25 H 0.147 0.853 26 H 0.164 0.836 27 H 0.162 0.838 28 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 4.185 -8.837 -5.663 11.299 hybrid contribution 0.446 -0.472 0.179 0.674 sum 4.631 -9.309 -5.483 11.754 Atomic orbital electron populations 1.70806 1.06781 1.31183 1.44007 1.25806 0.96373 1.02421 0.92445 0.83556 0.75001 0.75198 0.76614 1.20613 1.21413 1.21297 1.22283 0.95037 0.91499 1.56429 0.93347 1.18552 0.93819 0.88264 0.89217 0.90123 1.59681 1.14856 1.58830 1.06067 1.20441 0.93557 0.92265 0.91140 1.17162 0.98427 0.98401 0.81182 1.91428 1.94592 1.89459 1.33839 1.17987 0.89071 0.95760 0.90267 1.91498 1.60713 1.84098 1.74630 1.20742 1.02052 1.04023 0.91496 1.21079 0.92930 0.92825 1.00145 1.18646 0.98459 1.01084 0.93523 1.20669 0.80814 0.84492 0.78425 1.91082 1.62136 1.16435 1.64834 1.84567 1.52543 1.47001 1.49169 0.91802 0.85587 0.85333 0.83639 0.83777 0.73259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.23 13.63 55.43 0.76 -25.47 15 2 C 0.04 1.04 5.45 -17.82 -0.10 0.94 15 3 Si 1.07 25.37 29.91 -169.99 -5.08 20.28 15 4 H -0.28 -6.65 7.11 56.52 0.40 -6.24 15 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 15 6 H -0.29 -6.63 7.11 56.52 0.40 -6.23 15 7 C -0.61 -16.96 8.39 -34.44 -0.29 -17.25 15 8 H 0.05 1.37 7.81 -52.49 -0.41 0.96 15 9 C 0.21 5.25 1.81 -70.02 -0.13 5.12 15 10 H 0.08 2.18 4.17 -51.93 -0.22 1.96 15 11 N -0.86 -20.34 9.02 -6.65 -0.06 -20.40 15 12 C 0.03 0.62 4.96 -104.15 -0.52 0.10 15 13 C 0.07 1.40 7.00 -39.43 -0.28 1.13 15 14 F -0.11 -2.47 14.35 2.25 0.03 -2.44 15 15 C 0.09 1.52 7.31 -39.21 -0.29 1.23 15 16 F -0.13 -2.16 17.17 2.25 0.04 -2.12 15 17 C -0.16 -2.27 10.01 -39.59 -0.40 -2.67 15 18 C -0.05 -0.74 9.63 -39.18 -0.38 -1.12 15 19 C -0.12 -2.16 5.82 -104.99 -0.61 -2.77 15 20 C 0.51 9.61 7.47 34.55 0.26 9.87 15 21 O -0.46 -10.63 15.15 -19.25 -0.29 -10.92 15 22 O -0.52 -7.08 13.22 -40.58 -0.54 -7.62 15 23 H 0.27 7.94 6.29 -40.82 -0.26 7.68 15 24 H 0.33 7.69 6.42 -39.29 -0.25 7.44 15 25 H 0.33 8.04 8.58 -39.29 -0.34 7.70 15 26 H 0.15 1.47 8.06 -52.49 -0.42 1.05 15 27 H 0.14 1.58 8.03 -52.49 -0.42 1.16 15 28 H 0.41 3.74 9.11 45.56 0.42 4.16 15 LS Contribution 260.09 15.07 3.92 3.92 Total: -1.00 -32.03 260.09 -4.64 -36.67 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -0.70 Total: 13.50 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -2.72 Total: -5.40 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: 0.70 Total: -45.87 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -0.83 Total: -18.54 kcal Atomic # 9 Polarization: -4.63 SS G_CDS: 0.07 Total: -4.56 kcal Atomic # 14 Polarization: 25.37 SS G_CDS: -5.08 Total: 20.28 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -32.03 -4.64 -36.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309260204.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.219 kcal (2) G-P(sol) polarization free energy of solvation -32.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds