Wall clock time and date at job start Mon Mar 30 2020 04:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99754 * 2 1 4 4 H 1.48500 * 109.47619 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.47309 * 120.00113 * 3 2 1 6 6 H 1.48508 * 109.47448 * 240.00422 * 3 2 1 7 7 C 1.37878 * 120.00240 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99730 * 185.61550 * 7 2 1 9 9 C 1.50701 * 119.99783 * 5.61018 * 7 2 1 10 10 H 1.08997 * 109.47382 * 35.28449 * 9 7 2 11 11 N 1.46897 * 109.47082 * 275.28273 * 9 7 2 12 12 C 1.50700 * 109.47027 * 155.28339 * 9 7 2 13 13 C 1.38045 * 120.07401 * 74.20737 * 12 9 7 14 14 F 1.35097 * 119.96384 * 0.02562 * 13 12 9 15 15 C 1.38848 * 120.07452 * 179.77203 * 13 12 9 16 16 F 1.35099 * 119.88569 * 180.25363 * 15 13 12 17 17 C 1.38627 * 120.23085 * 0.51153 * 15 13 12 18 18 C 1.37825 * 120.15007 * 359.74089 * 17 15 13 19 19 C 1.39680 * 120.07811 * 254.48905 * 12 9 7 20 20 C 1.47606 * 120.11258 * 359.97438 * 19 12 9 21 21 O 1.21485 * 119.99830 * 35.54020 * 20 19 12 22 22 O 1.34731 * 119.99989 * 215.54063 * 20 19 12 23 23 H 0.97000 * 119.99400 * 175.06311 * 1 2 3 24 24 H 1.00904 * 110.99989 * 307.35310 * 11 9 7 25 25 H 1.00904 * 111.00370 * 71.30857 * 11 9 7 26 26 H 1.07997 * 119.92212 * 179.72496 * 17 15 13 27 27 H 1.08000 * 120.03813 * 180.02562 * 18 17 15 28 28 H 0.96698 * 117.00195 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6966 -1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0807 -1.1962 0.0910 9 6 1.2565 -2.4960 -0.1287 10 1 0.4017 -2.3602 -0.7912 11 7 0.7866 -2.9231 1.1959 12 6 2.1725 -3.5475 -0.6999 13 6 3.1609 -4.1049 0.0863 14 9 3.3069 -3.7077 1.3693 15 6 4.0019 -5.0772 -0.4385 16 9 4.9646 -5.6238 0.3358 17 6 3.8605 -5.4851 -1.7559 18 6 2.8803 -4.9311 -2.5507 19 6 2.0272 -3.9562 -2.0276 20 6 0.9760 -3.3600 -2.8751 21 8 0.6830 -2.1882 -2.7452 22 8 0.3415 -4.1153 -3.7927 23 1 -0.4849 -0.8370 -0.0723 24 1 1.5455 -2.9404 1.8606 25 1 0.0349 -2.3333 1.5205 26 1 4.5202 -6.2385 -2.1602 27 1 2.7715 -5.2506 -3.5766 28 1 -0.3392 -3.6807 -4.3244 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309260204.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:20 Heat of formation + Delta-G solvation = -177.273564 kcal Electronic energy + Delta-G solvation = -19441.290741 eV Core-core repulsion = 15899.227766 eV Total energy + Delta-G solvation = -3542.062975 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.065 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.56158 -49.63436 -41.57908 -39.54730 -37.29281 -36.64891 -33.59060 -31.96615 -31.40678 -27.66920 -25.82598 -24.94369 -22.86729 -22.32088 -19.50662 -19.19323 -18.98726 -18.45552 -17.69398 -17.38766 -17.23168 -16.43824 -16.30038 -16.02273 -15.74928 -15.41591 -15.10841 -14.87900 -14.58678 -14.29659 -13.78908 -13.47467 -13.09383 -13.02481 -12.68458 -12.49213 -12.07922 -11.97088 -11.52304 -11.21557 -10.71715 -10.07232 -9.86176 -9.37652 -8.62422 -6.41480 -0.57291 -0.00084 1.26397 1.45909 1.53561 1.72567 1.93691 2.33954 2.51421 2.70594 3.14012 3.28081 3.53193 3.71931 3.92459 4.03326 4.36112 4.63785 4.68266 4.79193 4.90130 4.92683 5.31518 5.58215 5.62241 5.77224 6.02072 6.40986 6.49415 6.71644 6.99051 7.37181 8.69530 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.018282 B = 0.009886 C = 0.007530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.214199 B = 2831.556969 C = 3717.765488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.010 4.010 3 Si 1.108 2.892 4 H -0.280 1.280 5 H -0.273 1.273 6 H -0.277 1.277 7 C -0.619 4.619 8 H 0.032 0.968 9 C 0.211 3.789 10 H 0.058 0.942 11 N -0.853 5.853 12 C -0.010 4.010 13 C 0.037 3.963 14 F -0.133 7.133 15 C 0.093 3.907 16 F -0.127 7.127 17 C -0.132 4.132 18 C -0.027 4.027 19 C -0.132 4.132 20 C 0.522 3.478 21 O -0.516 6.516 22 O -0.496 6.496 23 H 0.258 0.742 24 H 0.331 0.669 25 H 0.328 0.672 26 H 0.200 0.800 27 H 0.192 0.808 28 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.006 -11.980 -7.648 15.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.212 4.212 3 Si 0.931 3.069 4 H -0.205 1.205 5 H -0.198 1.198 6 H -0.203 1.203 7 C -0.658 4.658 8 H 0.051 0.949 9 C 0.102 3.898 10 H 0.075 0.925 11 N -0.382 5.382 12 C -0.012 4.012 13 C 0.017 3.983 14 F -0.112 7.112 15 C 0.073 3.927 16 F -0.106 7.106 17 C -0.151 4.151 18 C -0.045 4.045 19 C -0.134 4.134 20 C 0.366 3.634 21 O -0.405 6.405 22 O -0.310 6.310 23 H 0.069 0.931 24 H 0.145 0.855 25 H 0.138 0.862 26 H 0.217 0.783 27 H 0.209 0.791 28 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 5.856 -10.931 -7.595 14.542 hybrid contribution -0.043 -0.047 0.680 0.683 sum 5.813 -10.978 -6.915 14.217 Atomic orbital electron populations 1.70909 1.07472 1.30429 1.46506 1.27040 0.96555 1.05686 0.91918 0.83047 0.74331 0.72028 0.77510 1.20512 1.19792 1.20303 1.22469 0.94257 0.93231 1.55871 0.94921 1.18321 0.93549 0.88890 0.88996 0.92461 1.59661 1.14510 1.58179 1.05875 1.20232 0.94344 0.93549 0.93040 1.17468 0.99816 1.00288 0.80753 1.91363 1.94812 1.89971 1.35047 1.18153 0.88353 0.94773 0.91418 1.91513 1.60352 1.83774 1.74912 1.21356 1.01218 1.03150 0.89339 1.21598 0.90769 0.90101 1.01995 1.18912 0.99697 1.02327 0.92457 1.20769 0.80467 0.83793 0.78382 1.91072 1.63892 1.18948 1.66637 1.84499 1.52641 1.45803 1.48071 0.93114 0.85540 0.86182 0.78307 0.79054 0.70746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.90 13.63 21.45 0.29 -55.60 15 2 C -0.01 -0.61 5.45 84.65 0.46 -0.14 15 3 Si 1.11 52.06 29.91 68.60 2.05 54.11 15 4 H -0.28 -12.99 7.11 99.48 0.71 -12.29 15 5 H -0.27 -11.99 7.11 99.48 0.71 -11.28 15 6 H -0.28 -12.47 7.11 99.48 0.71 -11.76 15 7 C -0.62 -35.46 8.39 25.60 0.21 -35.25 15 8 H 0.03 1.91 7.81 -2.91 -0.02 1.89 15 9 C 0.21 10.97 1.81 43.42 0.08 11.05 15 10 H 0.06 3.25 4.17 -2.39 -0.01 3.24 15 11 N -0.85 -41.97 9.02 -174.96 -1.58 -43.54 15 12 C -0.01 -0.42 4.96 -19.56 -0.10 -0.51 15 13 C 0.04 1.50 7.00 22.37 0.16 1.66 15 14 F -0.13 -5.88 14.35 44.97 0.65 -5.24 15 15 C 0.09 2.91 7.31 22.51 0.16 3.07 15 16 F -0.13 -3.83 17.17 44.97 0.77 -3.06 15 17 C -0.13 -2.92 10.01 22.26 0.22 -2.70 15 18 C -0.03 -0.64 9.63 22.53 0.22 -0.42 15 19 C -0.13 -4.71 5.82 -20.10 -0.12 -4.83 15 20 C 0.52 18.99 7.47 70.29 0.53 19.52 15 21 O -0.52 -24.42 15.15 19.89 0.30 -24.12 15 22 O -0.50 -12.10 13.22 -56.41 -0.75 -12.85 15 23 H 0.26 15.97 6.29 -92.71 -0.58 15.38 15 24 H 0.33 16.10 6.42 -89.69 -0.58 15.53 15 25 H 0.33 16.60 8.58 -89.69 -0.77 15.83 15 26 H 0.20 2.39 8.06 -2.91 -0.02 2.37 15 27 H 0.19 2.80 8.03 -2.91 -0.02 2.78 15 28 H 0.43 6.77 9.11 -74.06 -0.67 6.10 15 Total: -1.00 -74.08 260.09 3.00 -71.08 By element: Atomic # 1 Polarization: 28.35 SS G_CDS: -0.56 Total: 27.79 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: 1.83 Total: -8.56 kcal Atomic # 7 Polarization: -97.86 SS G_CDS: -1.29 Total: -99.15 kcal Atomic # 8 Polarization: -36.52 SS G_CDS: -0.44 Total: -36.97 kcal Atomic # 9 Polarization: -9.72 SS G_CDS: 1.42 Total: -8.30 kcal Atomic # 14 Polarization: 52.06 SS G_CDS: 2.05 Total: 54.11 kcal Total: -74.08 3.00 -71.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309260204.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.195 kcal (2) G-P(sol) polarization free energy of solvation -74.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds