Wall clock time and date at job start Mon Mar 30 2020 04:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 11 11 N 1.46900 * 109.46780 * 299.72183 * 9 7 2 12 12 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 13 13 C 1.37869 * 120.04216 * 99.99986 * 12 9 7 14 14 C 1.38572 * 120.15129 * 179.97438 * 13 12 9 15 15 F 1.35102 * 119.88211 * 180.02562 * 14 13 12 16 16 C 1.38885 * 120.23703 * 359.97438 * 14 13 12 17 17 F 1.35099 * 119.96830 * 180.02562 * 16 14 13 18 18 C 1.38006 * 120.07315 * 359.97438 * 16 14 13 19 19 C 1.39667 * 120.03507 * 279.72091 * 12 9 7 20 20 C 1.47602 * 120.11994 * 0.02562 * 19 12 9 21 21 O 1.21483 * 119.99825 * 0.02562 * 20 19 12 22 22 O 1.34728 * 120.00056 * 179.97438 * 20 19 12 23 23 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 24 24 H 1.00903 * 111.00086 * 299.99570 * 11 9 7 25 25 H 1.00902 * 111.00206 * 63.95508 * 11 9 7 26 26 H 1.08004 * 119.92439 * 0.02562 * 13 12 9 27 27 H 1.08001 * 120.07564 * 180.02562 * 18 16 14 28 28 H 0.96703 * 116.99694 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 1 3.8711 -0.6785 0.8962 11 7 4.0062 -0.5040 -1.1930 12 6 4.0138 -2.6149 0.0107 13 6 4.4442 -3.1990 -1.1617 14 6 4.9069 -4.5051 -1.1597 15 9 5.3278 -5.0719 -2.3116 16 6 4.9406 -5.2334 0.0225 17 9 5.3933 -6.5062 0.0183 18 6 4.5131 -4.6578 1.2017 19 6 4.0493 -3.3397 1.2041 20 6 3.5949 -2.7169 2.4627 21 8 3.1886 -1.5720 2.4618 22 8 3.6297 -3.4184 3.6124 23 1 -0.4849 0.8400 0.0004 24 1 3.6862 -0.9633 -2.0325 25 1 3.7367 0.4684 -1.1876 26 1 4.4213 -2.6369 -2.0837 27 1 4.5397 -5.2239 2.1211 28 1 3.3215 -2.9683 4.4109 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309270210.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:35 Heat of formation + Delta-G solvation = -161.222866 kcal Electronic energy + Delta-G solvation = -19165.844333 eV Core-core repulsion = 15624.477368 eV Total energy + Delta-G solvation = -3541.366965 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.065 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.57472 -49.64076 -41.57145 -39.64196 -37.21321 -36.42979 -33.97178 -32.29078 -31.22040 -28.20566 -25.89780 -24.99133 -22.83631 -21.92503 -19.47498 -19.21367 -18.81877 -18.37811 -17.97179 -17.41627 -17.12471 -16.62782 -16.44166 -16.11756 -16.04046 -15.51783 -15.10684 -14.74753 -14.70990 -14.08938 -13.90746 -13.59026 -13.28573 -12.88943 -12.77927 -12.40639 -12.38805 -12.09447 -11.70298 -11.08868 -10.82927 -10.17412 -9.88068 -9.39458 -8.35094 -6.39595 -0.63835 -0.05919 1.23458 1.34868 1.42997 1.43839 2.05290 2.25910 2.42957 2.62386 2.99702 3.16063 3.44372 3.57809 3.79079 4.13319 4.40113 4.54725 4.63413 4.71313 4.74049 4.96520 5.38927 5.45784 5.57486 5.74415 6.00854 6.32581 6.56147 6.68861 7.10799 7.24671 8.81371 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.023282 B = 0.008318 C = 0.006764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.353493 B = 3365.397299 C = 4138.858479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.024 3.976 3 Si 0.931 3.069 4 H -0.251 1.251 5 H -0.298 1.298 6 H -0.252 1.252 7 C -0.515 4.515 8 H 0.030 0.970 9 C 0.202 3.798 10 H 0.076 0.924 11 N -0.841 5.841 12 C 0.031 3.969 13 C -0.130 4.130 14 C 0.105 3.895 15 F -0.124 7.124 16 C 0.037 3.963 17 F -0.127 7.127 18 C -0.051 4.051 19 C -0.124 4.124 20 C 0.518 3.482 21 O -0.503 6.503 22 O -0.504 6.504 23 H 0.266 0.734 24 H 0.339 0.661 25 H 0.320 0.680 26 H 0.166 0.834 27 H 0.185 0.815 28 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.955 -7.756 2.466 13.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.175 4.175 3 Si 0.757 3.243 4 H -0.176 1.176 5 H -0.225 1.225 6 H -0.176 1.176 7 C -0.555 4.555 8 H 0.049 0.951 9 C 0.092 3.908 10 H 0.093 0.907 11 N -0.376 5.376 12 C 0.029 3.971 13 C -0.149 4.149 14 C 0.085 3.915 15 F -0.103 7.103 16 C 0.017 3.983 17 F -0.106 7.106 18 C -0.069 4.069 19 C -0.126 4.126 20 C 0.361 3.639 21 O -0.391 6.391 22 O -0.319 6.319 23 H 0.075 0.925 24 H 0.152 0.848 25 H 0.136 0.864 26 H 0.183 0.817 27 H 0.203 0.797 28 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 11.598 -7.784 2.350 14.164 hybrid contribution -1.417 0.971 0.123 1.722 sum 10.180 -6.813 2.473 12.497 Atomic orbital electron populations 1.70023 1.08022 1.28003 1.52010 1.25691 0.95370 1.02558 0.93886 0.86065 0.79301 0.79376 0.79518 1.17618 1.22536 1.17590 1.21397 0.90689 0.93001 1.50394 0.95116 1.18678 0.91839 0.88346 0.91914 0.90672 1.59813 1.66089 1.05902 1.05757 1.20014 0.89647 0.96320 0.91076 1.20873 1.01032 0.92542 1.00434 1.17937 1.00109 0.92271 0.81213 1.91529 1.87319 1.84667 1.46765 1.17338 1.06377 0.81059 0.93521 1.91525 1.87018 1.34890 1.97122 1.21362 0.94200 0.93184 0.98188 1.18782 1.07433 0.95087 0.91304 1.20607 0.75167 0.83727 0.84358 1.91010 1.42150 1.19600 1.86385 1.84446 1.79971 1.48670 1.18820 0.92487 0.84761 0.86369 0.81704 0.79747 0.70709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.43 13.96 21.45 0.30 -57.13 15 2 C 0.02 1.34 5.47 84.66 0.46 1.80 15 3 Si 0.93 43.22 24.61 68.60 1.69 44.91 15 4 H -0.25 -10.52 7.01 99.48 0.70 -9.82 15 5 H -0.30 -14.09 7.11 99.48 0.71 -13.38 15 6 H -0.25 -11.37 6.54 99.48 0.65 -10.72 15 7 C -0.52 -28.06 8.02 25.60 0.21 -27.86 15 8 H 0.03 1.88 7.98 -2.91 -0.02 1.85 15 9 C 0.20 9.07 1.76 43.42 0.08 9.15 15 10 H 0.08 3.68 4.95 -2.39 -0.01 3.67 15 11 N -0.84 -33.66 8.62 -174.96 -1.51 -35.17 15 12 C 0.03 1.17 5.06 -19.61 -0.10 1.07 15 13 C -0.13 -4.27 9.22 22.26 0.21 -4.06 15 14 C 0.11 3.14 7.31 22.50 0.16 3.30 15 15 F -0.12 -3.60 17.18 44.97 0.77 -2.83 15 16 C 0.04 1.04 7.30 22.37 0.16 1.20 15 17 F -0.13 -3.39 17.18 44.97 0.77 -2.62 15 18 C -0.05 -1.37 9.59 22.58 0.22 -1.16 15 19 C -0.12 -4.24 5.87 -20.10 -0.12 -4.36 15 20 C 0.52 18.14 8.21 70.29 0.58 18.71 15 21 O -0.50 -22.16 13.12 19.89 0.26 -21.90 15 22 O -0.50 -12.28 12.68 -56.38 -0.71 -13.00 15 23 H 0.27 15.30 8.31 -92.71 -0.77 14.53 15 24 H 0.34 12.45 7.28 -89.69 -0.65 11.80 15 25 H 0.32 13.16 4.31 -89.69 -0.39 12.77 15 26 H 0.17 5.00 6.24 -2.91 -0.02 4.99 15 27 H 0.19 3.83 7.61 -2.91 -0.02 3.81 15 28 H 0.43 6.73 9.11 -74.06 -0.67 6.06 15 Total: -1.00 -67.29 251.59 2.92 -64.37 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: -0.51 Total: 25.57 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: 1.85 Total: -2.20 kcal Atomic # 7 Polarization: -91.09 SS G_CDS: -1.21 Total: -92.30 kcal Atomic # 8 Polarization: -34.44 SS G_CDS: -0.45 Total: -34.90 kcal Atomic # 9 Polarization: -7.00 SS G_CDS: 1.54 Total: -5.45 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 1.69 Total: 44.91 kcal Total: -67.29 2.92 -64.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309270210.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.848 kcal (2) G-P(sol) polarization free energy of solvation -67.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds