Wall clock time and date at job start Mon Mar 30 2020 04:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00135 * 2 1 4 4 H 1.48509 * 109.47299 * 90.00006 * 3 2 1 5 5 H 1.48498 * 109.47127 * 210.00037 * 3 2 1 6 6 H 1.48500 * 109.47347 * 330.00418 * 3 2 1 7 7 C 1.37879 * 119.99390 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00653 * 359.97438 * 7 2 1 9 9 C 1.50709 * 119.99166 * 180.02562 * 7 2 1 10 10 H 1.08996 * 109.47123 * 299.99626 * 9 7 2 11 11 N 1.46901 * 109.47286 * 59.99931 * 9 7 2 12 12 C 1.50702 * 109.46580 * 179.97438 * 9 7 2 13 13 C 1.37867 * 120.03814 * 258.53449 * 12 9 7 14 14 C 1.38590 * 120.15358 * 179.77343 * 13 12 9 15 15 F 1.35092 * 119.88863 * 180.25695 * 14 13 12 16 16 C 1.38893 * 120.22206 * 0.50384 * 14 13 12 17 17 F 1.35104 * 119.95579 * 179.72968 * 16 14 13 18 18 C 1.37995 * 120.08167 * 359.75025 * 16 14 13 19 19 C 1.39670 * 120.03986 * 78.80962 * 12 9 7 20 20 C 1.47605 * 120.11396 * 0.02562 * 19 12 9 21 21 O 1.21487 * 119.99919 * 4.75302 * 20 19 12 22 22 O 1.34722 * 119.99783 * 184.75659 * 20 19 12 23 23 H 0.97001 * 120.00002 * 359.97438 * 1 2 3 24 24 H 1.00904 * 110.99620 * 59.99833 * 11 9 7 25 25 H 1.00900 * 110.99802 * 183.95143 * 11 9 7 26 26 H 1.08004 * 119.92930 * 0.02562 * 13 12 9 27 27 H 1.08007 * 120.07453 * 179.97438 * 18 16 14 28 28 H 0.96703 * 117.00075 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5467 1.4401 -0.7000 6 1 1.4466 2.6527 -0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8752 -0.6797 -0.8894 11 7 4.0007 -0.5024 1.2001 12 6 4.0138 -2.6149 -0.0001 13 6 4.4670 -3.1868 1.1697 14 6 4.9251 -4.4948 1.1732 15 9 5.3631 -5.0516 2.3235 16 6 4.9400 -5.2336 -0.0029 17 9 5.3928 -6.5064 0.0057 18 6 4.4934 -4.6688 -1.1801 19 6 4.0260 -3.3521 -1.1863 20 6 3.5480 -2.7418 -2.4424 21 8 3.2243 -1.5711 -2.4642 22 8 3.4705 -3.4832 -3.5646 23 1 -0.4850 0.8401 0.0004 24 1 3.6769 -0.9605 2.0388 25 1 5.0073 -0.4323 1.1920 26 1 4.4614 -2.6156 2.0862 27 1 4.5055 -5.2432 -2.0947 28 1 3.1513 -3.0399 -4.3626 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309576658.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:37 Heat of formation + Delta-G solvation = -165.560282 kcal Electronic energy + Delta-G solvation = -19166.278938 eV Core-core repulsion = 15624.723888 eV Total energy + Delta-G solvation = -3541.555049 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.065 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.63215 -49.69594 -41.59868 -39.69982 -37.17010 -36.29900 -33.98696 -32.33398 -31.01870 -28.41353 -25.84379 -24.96892 -22.70395 -21.94176 -19.51224 -19.06767 -18.79809 -18.36685 -17.90936 -17.46549 -17.02873 -16.61254 -16.41820 -16.09608 -15.98824 -15.59166 -15.37186 -14.77308 -14.64407 -14.18260 -13.77225 -13.55975 -13.43201 -12.83031 -12.66369 -12.38582 -12.19491 -11.88365 -11.55246 -11.06067 -10.66988 -10.24309 -9.74433 -9.46905 -8.19896 -6.29233 -0.68437 -0.13417 1.39818 1.54002 1.60437 1.73363 2.03165 2.40040 2.56841 2.57546 3.09063 3.17625 3.37548 3.62926 3.82951 4.12191 4.28390 4.50929 4.58137 4.62384 4.72307 4.95990 5.25571 5.49058 5.62794 5.78980 6.11537 6.44195 6.77474 6.97009 7.10795 7.45235 8.93473 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.023246 B = 0.008333 C = 0.006777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.239719 B = 3359.235842 C = 4130.650027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.033 3.967 3 Si 0.995 3.005 4 H -0.273 1.273 5 H -0.264 1.264 6 H -0.330 1.330 7 C -0.485 4.485 8 H 0.027 0.973 9 C 0.212 3.788 10 H 0.079 0.921 11 N -0.848 5.848 12 C -0.008 4.008 13 C -0.145 4.145 14 C 0.108 3.892 15 F -0.124 7.124 16 C 0.036 3.964 17 F -0.127 7.127 18 C -0.051 4.051 19 C -0.119 4.119 20 C 0.518 3.482 21 O -0.501 6.501 22 O -0.506 6.506 23 H 0.262 0.738 24 H 0.343 0.657 25 H 0.338 0.662 26 H 0.166 0.834 27 H 0.184 0.816 28 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.704 -9.087 -2.362 15.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.166 4.166 3 Si 0.826 3.174 4 H -0.199 1.199 5 H -0.189 1.189 6 H -0.261 1.261 7 C -0.523 4.523 8 H 0.046 0.954 9 C 0.103 3.897 10 H 0.096 0.904 11 N -0.381 5.381 12 C -0.011 4.011 13 C -0.164 4.164 14 C 0.088 3.912 15 F -0.102 7.102 16 C 0.016 3.984 17 F -0.106 7.106 18 C -0.069 4.069 19 C -0.121 4.121 20 C 0.361 3.639 21 O -0.389 6.389 22 O -0.321 6.321 23 H 0.071 0.929 24 H 0.158 0.842 25 H 0.152 0.848 26 H 0.183 0.817 27 H 0.201 0.799 28 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 12.246 -8.312 -2.223 14.966 hybrid contribution 0.108 -0.212 -0.040 0.242 sum 12.355 -8.524 -2.262 15.179 Atomic orbital electron populations 1.70068 1.08438 1.27882 1.52714 1.25660 0.94994 1.03215 0.92713 0.84927 0.77581 0.77032 0.77877 1.19916 1.18855 1.26113 1.20556 0.88911 0.92400 1.50470 0.95426 1.18856 0.94161 0.84874 0.91836 0.90358 1.59045 1.15073 1.58382 1.05625 1.21220 0.89758 0.99101 0.91032 1.20901 1.02120 0.93246 1.00105 1.17914 0.99693 0.92357 0.81240 1.91533 1.86732 1.85138 1.46843 1.17365 1.06280 0.81031 0.93690 1.91530 1.87020 1.34936 1.97103 1.21417 0.93974 0.93422 0.98132 1.18819 1.06710 0.94895 0.91714 1.20612 0.75011 0.84069 0.84193 1.91006 1.44197 1.18443 1.85227 1.84440 1.80168 1.46680 1.20817 0.92935 0.84161 0.84809 0.81703 0.79919 0.70682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.85 13.96 21.45 0.30 -59.55 15 2 C 0.03 1.91 5.47 84.65 0.46 2.37 15 3 Si 0.99 49.74 26.03 68.60 1.79 51.52 15 4 H -0.27 -13.12 7.11 99.48 0.71 -12.42 15 5 H -0.26 -12.67 6.54 99.48 0.65 -12.02 15 6 H -0.33 -16.96 7.11 99.48 0.71 -16.25 15 7 C -0.49 -26.63 8.04 25.60 0.21 -26.42 15 8 H 0.03 1.69 7.98 -2.91 -0.02 1.67 15 9 C 0.21 9.20 1.63 43.43 0.07 9.27 15 10 H 0.08 3.71 4.93 -2.39 -0.01 3.70 15 11 N -0.85 -31.64 6.21 -174.94 -1.09 -32.73 15 12 C -0.01 -0.29 5.06 -19.61 -0.10 -0.39 15 13 C -0.14 -4.33 9.20 22.27 0.20 -4.12 15 14 C 0.11 3.03 7.31 22.51 0.16 3.19 15 15 F -0.12 -3.39 17.17 44.97 0.77 -2.62 15 16 C 0.04 0.97 7.30 22.37 0.16 1.14 15 17 F -0.13 -3.30 17.18 44.97 0.77 -2.52 15 18 C -0.05 -1.32 9.59 22.57 0.22 -1.10 15 19 C -0.12 -3.92 5.86 -20.10 -0.12 -4.03 15 20 C 0.52 17.78 8.16 70.29 0.57 18.36 15 21 O -0.50 -21.69 13.19 19.88 0.26 -21.43 15 22 O -0.51 -12.28 12.69 -56.32 -0.71 -12.99 15 23 H 0.26 15.68 8.31 -92.71 -0.77 14.91 15 24 H 0.34 11.87 7.31 -89.69 -0.66 11.21 15 25 H 0.34 10.12 9.04 -89.69 -0.81 9.31 15 26 H 0.17 4.34 6.23 -2.91 -0.02 4.33 15 27 H 0.18 3.69 7.62 -2.91 -0.02 3.67 15 28 H 0.43 6.77 9.11 -74.06 -0.67 6.10 15 Total: -1.00 -70.87 255.33 3.01 -67.85 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -0.92 Total: 14.21 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: 1.84 Total: -1.74 kcal Atomic # 7 Polarization: -91.49 SS G_CDS: -0.79 Total: -92.28 kcal Atomic # 8 Polarization: -33.97 SS G_CDS: -0.45 Total: -34.42 kcal Atomic # 9 Polarization: -6.69 SS G_CDS: 1.54 Total: -5.14 kcal Atomic # 14 Polarization: 49.74 SS G_CDS: 1.79 Total: 51.52 kcal Total: -70.87 3.01 -67.85 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309576658.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.708 kcal (2) G-P(sol) polarization free energy of solvation -70.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds