Wall clock time and date at job start Mon Mar 30 2020 04:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86801 * 120.00314 * 2 1 4 4 H 1.48504 * 109.47185 * 89.99879 * 3 2 1 5 5 H 1.48505 * 109.47129 * 330.00233 * 3 2 1 6 6 H 1.48500 * 109.47175 * 210.00032 * 3 2 1 7 7 C 1.40045 * 119.99538 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00119 * 10.14378 * 7 2 1 9 9 C 1.46380 * 119.99674 * 190.13770 * 7 2 1 10 10 O 1.21686 * 119.99975 * 8.72025 * 9 7 2 11 11 N 1.34776 * 119.99635 * 188.70973 * 9 7 2 12 12 C 1.47140 * 120.96046 * 354.53661 * 11 9 7 13 13 C 1.52834 * 108.59751 * 230.46280 * 12 11 9 14 14 O 1.42921 * 109.33223 * 307.96336 * 13 12 11 15 15 C 1.43285 * 114.08235 * 62.67518 * 14 13 12 16 16 C 1.52562 * 109.45222 * 56.63622 * 15 14 13 17 17 C 1.54184 * 112.69588 * 120.57887 * 16 15 14 18 18 S 1.83938 * 102.58990 * 24.48683 * 17 16 15 19 19 C 1.54493 * 108.37498 * 179.45067 * 15 14 13 20 20 C 1.47114 * 120.95288 * 174.81667 * 11 9 7 21 21 H 0.96996 * 120.00509 * 174.89653 * 1 2 3 22 22 H 1.08996 * 109.68809 * 350.24250 * 12 11 9 23 23 H 1.09000 * 109.68723 * 110.80919 * 12 11 9 24 24 H 1.09001 * 109.58807 * 187.93579 * 13 12 11 25 25 H 1.08999 * 109.38962 * 67.86819 * 13 12 11 26 26 H 1.09000 * 108.84291 * 241.42901 * 16 15 14 27 27 H 1.09002 * 108.84594 * 359.73168 * 16 15 14 28 28 H 1.08997 * 110.78794 * 142.76504 * 17 16 15 29 29 H 1.09003 * 110.78646 * 266.21435 * 17 16 15 30 30 H 1.09001 * 110.77545 * 332.51464 * 19 15 14 31 31 H 1.08989 * 110.77444 * 95.94828 * 19 15 14 32 32 H 1.08998 * 109.68773 * 248.95909 * 20 11 9 33 33 H 1.09000 * 109.68938 * 9.50070 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4884 2.0464 1.4001 5 1 1.4383 2.6527 -0.7000 6 1 3.5384 1.4401 -0.7000 7 6 2.0069 -1.2129 -0.0005 8 1 1.4795 -2.1408 -0.1657 9 6 3.4535 -1.2229 0.2226 10 8 4.0235 -0.2037 0.5647 11 7 4.1542 -2.3611 0.0493 12 6 3.4733 -3.6314 -0.2471 13 6 3.9858 -4.6967 0.7216 14 8 5.4144 -4.7186 0.6882 15 6 6.0281 -3.4973 1.1180 16 6 5.5512 -3.1573 2.5267 17 6 6.7092 -3.0630 3.5403 18 16 8.1497 -2.6662 2.4676 19 6 7.5615 -3.6701 1.0432 20 6 5.6213 -2.3704 0.1570 21 1 -0.4851 -0.8366 -0.0747 22 1 2.3975 -3.5095 -0.1213 23 1 3.6917 -3.9349 -1.2710 24 1 3.5998 -5.6731 0.4286 25 1 3.6490 -4.4601 1.7309 26 1 5.0277 -2.2016 2.5001 27 1 4.8549 -3.9277 2.8582 28 1 6.5301 -2.2633 4.2589 29 1 6.8565 -4.0157 4.0490 30 1 7.8392 -4.7169 1.1672 31 1 7.9498 -3.2744 0.1048 32 1 6.0605 -2.5484 -0.8246 33 1 5.9670 -1.4126 0.5459 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335548597.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:41 Heat of formation + Delta-G solvation = -82.546881 kcal Electronic energy + Delta-G solvation = -18150.741878 eV Core-core repulsion = 15302.460041 eV Total energy + Delta-G solvation = -2848.281837 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.087 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.06391 -37.42108 -34.52893 -33.78740 -32.97967 -30.76172 -28.18860 -27.39484 -25.24123 -23.75421 -22.92426 -19.88656 -18.91544 -17.53412 -17.17370 -16.19269 -15.88303 -15.25745 -15.17298 -14.66574 -13.89774 -13.86100 -13.74941 -13.29977 -13.13935 -12.65576 -12.31336 -12.22913 -11.97957 -11.66952 -11.35324 -11.23278 -11.06916 -10.63670 -10.35594 -10.16990 -10.08068 -9.63914 -9.22280 -8.98319 -7.98978 -7.73225 -7.61024 -7.07409 -5.00233 1.80376 2.18169 3.50873 3.59004 3.78765 3.94470 4.10429 4.20120 4.47943 4.56111 4.70153 4.76941 5.03106 5.14619 5.23116 5.32755 5.40658 5.46546 5.54804 5.60100 5.74612 5.82028 5.92619 6.05258 6.15681 6.20145 6.32705 7.07018 7.24015 7.62074 7.66965 8.02101 8.75485 8.85360 9.94055 10.25630 Molecular weight = 257.09amu Principal moments of inertia in cm(-1) A = 0.028056 B = 0.007463 C = 0.006488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.752275 B = 3750.889515 C = 4314.538288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.063 3.937 3 Si 1.117 2.883 4 H -0.288 1.288 5 H -0.320 1.320 6 H -0.271 1.271 7 C -0.598 4.598 8 H 0.075 0.925 9 C 0.554 3.446 10 O -0.610 6.610 11 N -0.635 5.635 12 C 0.088 3.912 13 C 0.042 3.958 14 O -0.376 6.376 15 C 0.104 3.896 16 C -0.151 4.151 17 C -0.059 4.059 18 S -0.287 6.287 19 C -0.051 4.051 20 C 0.101 3.899 21 H 0.278 0.722 22 H 0.101 0.899 23 H 0.056 0.944 24 H 0.099 0.901 25 H 0.056 0.944 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.106 0.894 29 H 0.088 0.912 30 H 0.100 0.900 31 H 0.111 0.889 32 H 0.057 0.943 33 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.708 -10.079 2.875 14.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.155 4.155 3 Si 0.948 3.052 4 H -0.215 1.215 5 H -0.251 1.251 6 H -0.197 1.197 7 C -0.634 4.634 8 H 0.093 0.907 9 C 0.364 3.636 10 O -0.502 6.502 11 N -0.371 5.371 12 C -0.036 4.036 13 C -0.036 4.036 14 O -0.295 6.295 15 C 0.062 3.938 16 C -0.190 4.190 17 C -0.207 4.207 18 S -0.061 6.061 19 C -0.200 4.200 20 C -0.024 4.024 21 H 0.089 0.911 22 H 0.119 0.881 23 H 0.074 0.926 24 H 0.117 0.883 25 H 0.074 0.926 26 H 0.113 0.887 27 H 0.101 0.899 28 H 0.124 0.876 29 H 0.107 0.893 30 H 0.119 0.881 31 H 0.130 0.870 32 H 0.075 0.925 33 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 10.850 -7.473 3.236 13.566 hybrid contribution -1.191 -2.604 -0.181 2.869 sum 9.659 -10.077 3.055 14.289 Atomic orbital electron populations 1.70637 1.07634 1.32120 1.35431 1.27109 0.95271 1.04863 0.88232 0.82681 0.73552 0.70969 0.77965 1.21479 1.25093 1.19691 1.22093 0.90933 0.96567 1.53827 0.90682 1.18451 0.88159 0.80401 0.76548 1.90257 1.71902 1.31999 1.56062 1.47852 1.04225 1.08779 1.76213 1.22019 0.99565 0.84319 0.97696 1.23025 0.80887 0.99910 0.99738 1.88012 1.19525 1.34593 1.87396 1.22679 0.90964 0.86378 0.93771 1.22586 0.98391 1.05192 0.92816 1.24060 0.92891 1.04783 0.98972 1.87944 1.34802 1.67164 1.16171 1.24122 0.94195 1.02585 0.99053 1.22081 0.83644 0.99084 0.97545 0.91139 0.88056 0.92602 0.88311 0.92551 0.88695 0.89936 0.87590 0.89331 0.88121 0.87029 0.92497 0.87905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.39 13.65 55.55 0.76 -22.63 16 2 C 0.06 1.78 5.52 -17.37 -0.10 1.68 16 3 Si 1.12 28.96 26.47 -169.99 -4.50 24.46 16 4 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 5 H -0.32 -7.97 7.11 56.52 0.40 -7.57 16 6 H -0.27 -7.24 6.28 56.52 0.35 -6.89 16 7 C -0.60 -16.23 9.26 -35.63 -0.33 -16.56 16 8 H 0.08 1.97 5.96 -52.49 -0.31 1.66 16 9 C 0.55 14.33 7.39 -12.99 -0.10 14.23 16 10 O -0.61 -17.14 11.49 5.20 0.06 -17.08 16 11 N -0.64 -13.39 2.62 -174.08 -0.46 -13.84 16 12 C 0.09 1.55 6.48 -3.78 -0.02 1.52 16 13 C 0.04 0.61 6.59 37.07 0.24 0.85 16 14 O -0.38 -5.71 10.11 -35.23 -0.36 -6.07 16 15 C 0.10 1.59 0.96 -89.76 -0.09 1.51 16 16 C -0.15 -2.28 5.03 -26.34 -0.13 -2.41 16 17 C -0.06 -0.75 7.46 37.78 0.28 -0.47 16 18 S -0.29 -4.01 23.26 -107.50 -2.50 -6.51 16 19 C -0.05 -0.67 6.61 37.94 0.25 -0.42 16 20 C 0.10 1.86 4.89 -3.40 -0.02 1.84 16 21 H 0.28 7.48 8.72 -40.82 -0.36 7.12 16 22 H 0.10 1.88 5.50 -51.93 -0.29 1.59 16 23 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 25 H 0.06 0.83 6.07 -51.93 -0.32 0.51 16 26 H 0.09 1.75 7.37 -51.93 -0.38 1.36 16 27 H 0.08 1.18 5.99 -51.93 -0.31 0.87 16 28 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.10 1.20 8.07 -51.93 -0.42 0.78 16 31 H 0.11 1.35 7.62 -51.94 -0.40 0.96 16 32 H 0.06 0.98 7.90 -51.93 -0.41 0.57 16 33 H 0.10 2.10 7.04 -51.93 -0.37 1.74 16 LS Contribution 271.09 15.07 4.09 4.09 Total: -1.00 -30.58 271.09 -7.00 -37.58 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: -4.09 Total: -1.77 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 0.00 Total: 1.77 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 0.30 Total: -36.48 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: -0.30 Total: -23.15 kcal Atomic # 14 Polarization: 28.96 SS G_CDS: -4.50 Total: 24.46 kcal Atomic # 16 Polarization: -4.01 SS G_CDS: -2.50 Total: -6.51 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.58 -7.00 -37.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335548597.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.966 kcal (2) G-P(sol) polarization free energy of solvation -30.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds