Wall clock time and date at job start Mon Mar 30 2020 04:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86797 * 119.99807 * 2 1 4 4 H 1.48504 * 109.47238 * 240.00367 * 3 2 1 5 5 H 1.48506 * 109.47123 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47070 * 120.00228 * 3 2 1 7 7 C 1.38797 * 120.00108 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00003 * 179.97438 * 7 2 1 9 9 S 1.76202 * 120.00204 * 0.02562 * 7 2 1 10 10 C 1.80997 * 99.99944 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47103 * 179.97438 * 10 9 7 12 12 O 1.21292 * 119.99844 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00414 * 180.02562 * 11 10 9 14 14 C 1.46495 * 120.00249 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.47061 * 179.97438 * 14 13 11 16 16 C 1.34414 * 126.54380 * 265.04018 * 15 14 13 17 17 N 1.34364 * 108.26534 * 179.97438 * 16 15 14 18 18 C 1.31009 * 109.30228 * 0.02562 * 17 16 15 19 19 O 1.35509 * 125.76725 * 180.02562 * 18 17 16 20 20 N 1.35885 * 108.47179 * 359.97438 * 18 17 16 21 21 H 0.97005 * 126.47480 * 180.26245 * 20 18 17 22 22 H 0.96994 * 120.00079 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46919 * 60.00253 * 10 9 7 24 24 H 1.08997 * 109.47357 * 299.99485 * 10 9 7 25 25 H 0.97007 * 119.99580 * 359.97438 * 13 11 10 26 26 H 1.09004 * 109.47442 * 59.99718 * 14 13 11 27 27 H 1.09002 * 109.47214 * 299.99574 * 14 13 11 28 28 H 1.08000 * 125.86608 * 359.93190 * 16 15 14 29 29 H 0.96700 * 113.99556 * 269.97496 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6965 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 16 1.1295 -2.7280 -0.0019 10 6 2.5161 -3.8913 -0.0029 11 6 1.9877 -5.3027 -0.0036 12 8 0.7913 -5.5023 -0.0038 13 7 2.8444 -6.3431 -0.0039 14 6 2.3307 -7.7150 -0.0050 15 6 3.4852 -8.6837 -0.0058 16 6 4.0384 -9.2687 -1.0821 17 7 5.0395 -10.0608 -0.6629 18 6 5.1301 -9.9903 0.6422 19 8 6.0265 -10.6548 1.4109 20 7 4.1738 -9.1374 1.0946 21 1 4.0105 -8.8920 2.0188 22 1 -0.4850 0.8400 0.0004 23 1 3.1246 -3.7320 0.8872 24 1 3.1246 -3.7305 -0.8928 25 1 3.8012 -6.1834 -0.0041 26 1 1.7225 -7.8745 -0.8954 27 1 1.7217 -7.8758 0.8846 28 1 3.7305 -9.1270 -2.1075 29 1 5.7215 -11.5223 1.7100 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379791268.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:50 Heat of formation + Delta-G solvation = -49.823066 kcal Electronic energy + Delta-G solvation = -15698.943827 eV Core-core repulsion = 12748.540658 eV Total energy + Delta-G solvation = -2950.403169 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.062 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.14698 -40.54727 -38.35466 -35.94701 -34.57509 -33.62952 -31.92430 -29.94387 -27.68131 -26.29730 -22.80628 -22.13552 -21.82206 -20.27266 -19.75837 -18.21145 -17.81956 -17.12382 -16.86808 -16.77103 -16.35975 -15.80859 -15.07517 -14.93458 -14.70616 -14.44159 -14.31201 -14.03263 -13.32386 -13.16231 -12.87110 -12.86071 -12.62109 -11.74807 -11.25247 -11.18216 -11.12275 -11.03096 -10.27630 -10.18840 -9.46227 -8.65321 -8.33944 -6.11661 0.61219 1.28166 1.44314 1.45606 1.52648 1.59801 1.62348 1.86944 2.27905 2.43691 3.00149 3.02283 3.32956 3.64613 3.98103 4.02340 4.30063 4.35350 4.43883 4.53074 4.66304 5.03670 5.31322 5.42554 5.49851 5.91291 6.20314 6.42766 6.74463 6.82389 7.07532 7.19100 8.74845 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.047236 B = 0.003416 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.623632 B = 8194.552251 C = 8532.527773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.014 3.986 3 Si 0.997 3.003 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.548 4.548 8 H 0.082 0.918 9 S -0.147 6.147 10 C -0.132 4.132 11 C 0.539 3.461 12 O -0.560 6.560 13 N -0.713 5.713 14 C 0.202 3.798 15 C -0.024 4.024 16 C 0.006 3.994 17 N -0.521 5.521 18 C 0.387 3.613 19 O -0.449 6.449 20 N -0.554 5.554 21 H 0.433 0.567 22 H 0.271 0.729 23 H 0.109 0.891 24 H 0.109 0.891 25 H 0.413 0.587 26 H 0.100 0.900 27 H 0.080 0.920 28 H 0.193 0.807 29 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.973 -19.294 2.980 22.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.819 3.181 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.696 4.696 8 H 0.100 0.900 9 S 0.080 5.920 10 C -0.283 4.283 11 C 0.325 3.675 12 O -0.437 6.437 13 N -0.368 5.368 14 C 0.079 3.921 15 C -0.139 4.139 16 C -0.142 4.142 17 N -0.252 5.252 18 C 0.085 3.915 19 O -0.253 6.253 20 N -0.172 5.172 21 H 0.274 0.726 22 H 0.080 0.920 23 H 0.127 0.873 24 H 0.128 0.872 25 H 0.250 0.750 26 H 0.118 0.882 27 H 0.098 0.902 28 H 0.210 0.790 29 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 9.771 -19.642 2.450 22.075 hybrid contribution 1.204 1.352 1.124 2.131 sum 10.976 -18.290 3.573 21.628 Atomic orbital electron populations 1.70169 1.07899 1.28669 1.47919 1.26103 0.95960 1.03250 0.93759 0.85028 0.77826 0.75850 0.79441 1.18741 1.20378 1.18749 1.23178 0.95343 0.92133 1.58958 0.89992 1.85525 1.10364 0.99081 1.97055 1.23385 1.03634 0.94465 1.06799 1.19966 0.86120 0.86398 0.75019 1.90713 1.17119 1.85971 1.49938 1.45885 1.10318 1.04658 1.75920 1.19581 0.90941 0.77050 1.04575 1.20836 1.00573 1.05411 0.87111 1.22462 0.94051 0.97662 1.00064 1.70553 1.21470 1.24923 1.08233 1.20397 0.88961 0.95256 0.86865 1.84884 1.36651 1.36735 1.67011 1.43689 1.25955 1.36630 1.10934 0.72581 0.91983 0.87317 0.87248 0.75012 0.88214 0.90169 0.79011 0.71319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.32 13.22 21.65 0.29 -55.03 15 2 C 0.01 0.80 5.49 84.86 0.47 1.27 15 3 Si 1.00 43.14 29.55 68.60 2.03 45.17 15 4 H -0.26 -10.82 7.11 99.48 0.71 -10.11 15 5 H -0.28 -11.76 7.11 99.48 0.71 -11.05 15 6 H -0.26 -10.80 7.11 99.48 0.71 -10.09 15 7 C -0.55 -30.89 9.50 67.95 0.65 -30.24 15 8 H 0.08 4.28 7.80 -2.91 -0.02 4.26 15 9 S -0.15 -7.99 20.57 -56.49 -1.16 -9.15 15 10 C -0.13 -4.98 6.16 71.24 0.44 -4.54 15 11 C 0.54 18.27 7.85 87.66 0.69 18.96 15 12 O -0.56 -23.99 15.86 -3.07 -0.05 -24.04 15 13 N -0.71 -15.86 5.55 -466.78 -2.59 -18.45 15 14 C 0.20 3.70 6.22 85.63 0.53 4.23 15 15 C -0.02 -0.39 6.61 40.79 0.27 -0.12 15 16 C 0.01 0.12 11.77 83.43 0.98 1.10 15 17 N -0.52 -11.22 11.28 -314.07 -3.54 -14.76 15 18 C 0.39 6.54 9.49 179.84 1.71 8.25 15 19 O -0.45 -5.54 13.64 -88.11 -1.20 -6.74 15 20 N -0.55 -7.38 6.22 -297.42 -1.85 -9.23 15 21 H 0.43 3.64 8.96 -92.70 -0.83 2.81 15 22 H 0.27 15.34 8.31 -92.71 -0.77 14.57 15 23 H 0.11 3.69 8.14 -2.40 -0.02 3.67 15 24 H 0.11 3.75 8.14 -2.40 -0.02 3.73 15 25 H 0.41 7.30 8.46 -92.70 -0.78 6.51 15 26 H 0.10 1.86 8.14 -2.38 -0.02 1.84 15 27 H 0.08 1.47 8.14 -2.39 -0.02 1.46 15 28 H 0.19 2.78 8.06 -2.91 -0.02 2.76 15 29 H 0.43 0.63 9.06 -74.06 -0.67 -0.05 15 Total: -1.00 -79.60 283.54 -3.41 -83.01 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -1.06 Total: 10.31 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: 5.73 Total: -1.09 kcal Atomic # 7 Polarization: -89.77 SS G_CDS: -7.70 Total: -97.47 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -1.25 Total: -30.78 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: -7.99 SS G_CDS: -1.16 Total: -9.15 kcal Total: -79.60 -3.41 -83.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379791268.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.189 kcal (2) G-P(sol) polarization free energy of solvation -79.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds