Wall clock time and date at job start Mon Mar 30 2020 05:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30524 * 1 3 3 Si 1.86800 * 119.99549 * 2 1 4 4 H 1.48508 * 109.46690 * 239.99862 * 3 2 1 5 5 H 1.48494 * 109.47274 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47066 * 120.00468 * 3 2 1 7 7 C 1.40438 * 119.99966 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99583 * 180.02562 * 7 2 1 9 9 C 1.40380 * 120.00049 * 359.97438 * 7 2 1 10 10 N 1.33183 * 126.68397 * 180.02562 * 9 7 2 11 11 C 1.34270 * 105.48211 * 179.97438 * 10 9 7 12 12 C 1.48520 * 126.20136 * 179.97438 * 11 10 9 13 13 C 1.39232 * 119.71165 * 179.97438 * 12 11 10 14 14 C 1.38409 * 118.90314 * 180.02562 * 13 12 11 15 15 C 1.38822 * 118.66613 * 359.96100 * 14 13 12 16 16 C 1.38327 * 119.49761 * 0.06164 * 15 14 13 17 17 N 1.32137 * 120.38262 * 359.94432 * 16 15 14 18 18 C 1.51492 * 109.56973 * 179.97438 * 16 15 14 19 19 C 1.54590 * 105.23389 * 17.26437 * 18 16 15 20 20 C 1.51256 * 130.58847 * 180.02562 * 15 14 13 21 21 N 1.31227 * 107.60275 * 0.22558 * 11 10 9 22 22 O 1.21263 * 110.53391 * 359.59666 * 21 11 10 23 23 H 0.96993 * 120.00166 * 359.97438 * 1 2 3 24 24 H 1.08004 * 120.54296 * 0.02562 * 13 12 11 25 25 H 1.08005 * 120.66729 * 180.02562 * 14 13 12 26 26 H 1.09005 * 110.29677 * 136.18092 * 18 16 15 27 27 H 1.08997 * 110.30133 * 258.21864 * 18 16 15 28 28 H 1.08992 * 110.90380 * 215.38962 * 19 18 16 29 29 H 1.08998 * 110.85266 * 91.75952 * 19 18 16 30 30 H 1.09002 * 110.31240 * 281.79014 * 20 15 14 31 31 H 1.09000 * 110.31228 * 43.86395 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2391 1.6178 0.0000 4 1 3.0929 1.6964 -1.2126 5 1 1.2741 2.7464 -0.0006 6 1 3.0929 1.6965 1.2125 7 6 2.0074 -1.2162 -0.0005 8 1 3.0874 -1.2162 -0.0001 9 6 1.3055 -2.4320 -0.0005 10 7 1.8327 -3.6550 -0.0005 11 6 0.7862 -4.4963 0.0000 12 6 0.8535 -5.9800 -0.0003 13 6 -0.3233 -6.7242 0.0010 14 6 -0.2410 -8.1058 0.0012 15 6 1.0144 -8.6982 -0.0006 16 6 2.1442 -7.9001 -0.0013 17 7 2.0323 -6.5834 -0.0014 18 6 3.3823 -8.7731 -0.0027 19 6 2.8930 -10.1711 -0.4454 20 6 1.4143 -10.1570 -0.0014 21 7 -0.3068 -3.7702 -0.0046 22 8 -0.0327 -2.5889 0.0002 23 1 -0.4850 0.8400 0.0004 24 1 -1.2843 -6.2314 0.0017 25 1 -1.1357 -8.7109 0.0017 26 1 4.1158 -8.3878 -0.7111 27 1 3.8125 -8.8207 0.9977 28 1 3.4442 -10.9573 0.0703 29 1 2.9727 -10.2857 -1.5264 30 1 1.3142 -10.5773 0.9994 31 1 0.8025 -10.7166 -0.7090 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383582764.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:55 Heat of formation + Delta-G solvation = 54.540960 kcal Electronic energy + Delta-G solvation = -17744.987049 eV Core-core repulsion = 14799.498586 eV Total energy + Delta-G solvation = -2945.488462 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.090 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -45.14202 -41.66480 -37.50112 -36.14113 -35.42604 -33.74644 -32.74984 -30.16853 -28.77854 -28.51042 -25.43914 -23.87727 -23.30805 -22.17572 -21.68265 -19.86675 -18.02569 -17.80748 -17.53003 -17.12900 -16.62226 -16.10164 -15.96159 -15.17551 -14.71317 -14.45214 -13.89497 -13.77204 -13.71320 -13.49199 -13.12856 -13.09778 -12.69366 -12.29271 -12.28920 -12.05382 -12.01292 -11.79689 -11.48394 -11.10916 -10.82177 -10.56117 -10.32595 -9.49083 -8.99263 -7.16023 -0.29968 0.23735 0.96480 1.39653 1.54257 1.58607 1.95193 2.14651 2.57731 2.78295 3.02274 3.09963 3.32484 3.47829 3.76608 3.96696 4.13604 4.20612 4.23446 4.34830 4.54062 4.81107 4.85707 4.88515 4.89942 4.97485 5.05181 5.17590 5.24214 5.25830 5.37376 5.65874 5.79925 5.98621 6.18473 6.38769 6.97570 8.01882 8.15845 Molecular weight = 257.09amu Principal moments of inertia in cm(-1) A = 0.049101 B = 0.004365 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.115133 B = 6412.864563 C = 6949.857317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.029 3.971 3 Si 1.025 2.975 4 H -0.251 1.251 5 H -0.256 1.256 6 H -0.250 1.250 7 C -0.430 4.430 8 H 0.122 0.878 9 C 0.267 3.733 10 N -0.617 5.617 11 C 0.199 3.801 12 C 0.184 3.816 13 C -0.148 4.148 14 C -0.059 4.059 15 C -0.141 4.141 16 C 0.092 3.908 17 N -0.490 5.490 18 C -0.072 4.072 19 C -0.106 4.106 20 C -0.070 4.070 21 N -0.470 5.470 22 O 0.025 5.975 23 H 0.308 0.692 24 H 0.140 0.860 25 H 0.181 0.819 26 H 0.078 0.922 27 H 0.098 0.902 28 H 0.114 0.886 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.093 -14.914 -0.074 15.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.193 4.193 3 Si 0.841 3.159 4 H -0.174 1.174 5 H -0.179 1.179 6 H -0.174 1.174 7 C -0.467 4.467 8 H 0.140 0.860 9 C 0.079 3.921 10 N -0.362 5.362 11 C -0.073 4.073 12 C 0.047 3.953 13 C -0.170 4.170 14 C -0.084 4.084 15 C -0.144 4.144 16 C -0.048 4.048 17 N -0.200 5.200 18 C -0.110 4.110 19 C -0.143 4.143 20 C -0.107 4.107 21 N -0.204 5.204 22 O -0.021 6.021 23 H 0.120 0.880 24 H 0.158 0.842 25 H 0.198 0.802 26 H 0.097 0.903 27 H 0.116 0.884 28 H 0.133 0.867 29 H 0.100 0.900 30 H 0.124 0.876 31 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.192 -14.810 -0.083 14.972 hybrid contribution -0.694 1.054 0.024 1.262 sum 1.498 -13.756 -0.059 13.837 Atomic orbital electron populations 1.69674 1.09732 1.33256 1.29340 1.27429 0.95982 1.05760 0.90155 0.84622 0.78239 0.72145 0.80908 1.17424 1.17921 1.17405 1.19149 0.95782 0.85965 1.45796 0.86021 1.24900 0.79950 0.95154 0.92103 1.72478 1.28500 0.98491 1.36706 1.23613 0.86318 0.95665 1.01666 1.17991 0.89905 0.87169 1.00224 1.22054 0.98174 0.95634 1.01171 1.21373 0.99001 0.92339 0.95663 1.22195 0.93197 1.00096 0.98924 1.22767 0.99245 0.87537 0.95300 1.66533 1.27924 1.13303 1.12268 1.21249 0.92559 0.93479 1.03713 1.22415 0.94788 0.94586 1.02536 1.21121 0.97113 0.88185 1.04283 1.74452 1.23879 0.90787 1.31278 1.85436 1.26208 1.18174 1.72233 0.88004 0.84202 0.80152 0.90334 0.88404 0.86716 0.89988 0.87642 0.87843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -41.20 12.05 21.91 0.26 -40.93 16 2 C 0.03 1.42 5.50 85.42 0.47 1.89 16 3 Si 1.03 35.42 29.56 68.60 2.03 37.45 16 4 H -0.25 -8.31 7.11 99.48 0.71 -7.61 16 5 H -0.26 -8.05 7.11 99.48 0.71 -7.35 16 6 H -0.25 -8.30 7.11 99.48 0.71 -7.60 16 7 C -0.43 -24.03 9.48 23.33 0.22 -23.81 16 8 H 0.12 6.39 7.85 -2.91 -0.02 6.37 16 9 C 0.27 16.65 7.80 85.07 0.66 17.31 16 10 N -0.62 -38.80 11.61 -305.15 -3.54 -42.34 16 11 C 0.20 11.69 7.88 137.49 1.08 12.77 16 12 C 0.18 8.96 6.76 42.04 0.28 9.25 16 13 C -0.15 -5.70 9.73 22.55 0.22 -5.48 16 14 C -0.06 -1.62 10.16 22.45 0.23 -1.39 16 15 C -0.14 -3.69 6.16 -19.53 -0.12 -3.81 16 16 C 0.09 3.09 7.31 42.79 0.31 3.41 16 17 N -0.49 -22.59 10.27 -172.02 -1.77 -24.36 16 18 C -0.07 -1.64 6.77 30.64 0.21 -1.43 16 19 C -0.11 -1.40 7.10 31.61 0.22 -1.18 16 20 C -0.07 -1.00 6.76 30.50 0.21 -0.80 16 21 N -0.47 -28.16 11.81 -56.13 -0.66 -28.82 16 22 O 0.03 1.58 9.72 64.36 0.63 2.21 16 23 H 0.31 13.88 8.29 -92.71 -0.77 13.11 16 24 H 0.14 5.31 7.85 -2.91 -0.02 5.29 16 25 H 0.18 3.19 8.06 -2.91 -0.02 3.17 16 26 H 0.08 1.86 8.14 -2.38 -0.02 1.85 16 27 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -79.01 278.68 2.11 -76.90 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: 1.17 Total: 13.17 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: 4.00 Total: 6.73 kcal Atomic # 7 Polarization: -130.75 SS G_CDS: -5.71 Total: -136.46 kcal Atomic # 8 Polarization: 1.58 SS G_CDS: 0.63 Total: 2.21 kcal Atomic # 14 Polarization: 35.42 SS G_CDS: 2.03 Total: 37.45 kcal Total: -79.01 2.11 -76.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383582764.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.437 kcal (2) G-P(sol) polarization free energy of solvation -79.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds