Wall clock time and date at job start Mon Mar 30 2020 04:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 S 1.77225 * 127.33909 * 2 1 4 4 C 1.72211 * 94.84693 * 179.81037 * 3 2 1 5 5 O 1.21829 * 127.05684 * 180.20633 * 4 3 2 6 6 N 1.34240 * 105.88619 * 0.31866 * 4 3 2 7 7 C 1.46497 * 121.38559 * 179.87885 * 6 4 3 8 8 C 1.52997 * 109.47195 * 269.72460 * 7 6 4 9 9 O 1.42898 * 109.47319 * 64.99855 * 8 7 6 10 10 C 1.42902 * 114.00186 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.47205 * 179.97438 * 10 9 8 12 12 H 1.08008 * 120.00105 * 359.97438 * 11 10 9 13 13 C 1.37873 * 120.00129 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99722 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00218 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46964 * 89.99643 * 15 13 11 17 17 H 1.48499 * 109.47045 * 209.99599 * 15 13 11 18 18 H 1.48495 * 109.46904 * 329.99888 * 15 13 11 19 19 C 1.32565 * 127.33938 * 179.97438 * 2 1 3 20 20 C 1.50696 * 121.64697 * 359.97438 * 19 2 1 21 21 H 1.08998 * 109.47523 * 270.00244 * 1 2 3 22 22 H 1.09003 * 109.47413 * 29.99857 * 1 2 3 23 23 H 1.09003 * 109.47413 * 149.99708 * 1 2 3 24 24 H 1.09001 * 109.47117 * 149.71795 * 7 6 4 25 25 H 1.09004 * 109.46581 * 29.72448 * 7 6 4 26 26 H 1.09002 * 109.47153 * 304.99547 * 8 7 6 27 27 H 1.09001 * 109.46832 * 184.99738 * 8 7 6 28 28 H 1.09001 * 109.46918 * 299.99649 * 10 9 8 29 29 H 1.08999 * 109.46857 * 59.99535 * 10 9 8 30 30 H 0.96998 * 119.99585 * 180.02562 * 14 13 11 31 31 H 1.08992 * 109.47346 * 270.02262 * 20 19 2 32 32 H 1.09001 * 109.46783 * 30.02588 * 20 19 2 33 33 H 1.08999 * 109.47167 * 150.02003 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5819 1.4090 0.0000 4 6 4.0344 0.4840 0.0057 5 8 5.1759 0.9096 0.0113 6 7 3.6508 -0.8025 0.0001 7 6 4.6312 -1.8910 0.0000 8 6 4.9726 -2.2698 -1.4425 9 8 5.6268 -1.1717 -2.0813 10 6 5.9900 -1.4224 -3.4405 11 6 6.6685 -0.2042 -4.0121 12 1 6.8079 0.6739 -3.3988 13 6 7.1102 -0.2102 -5.3181 14 7 6.9399 -1.2793 -6.0649 15 14 7.9505 1.3001 -6.0269 16 1 9.4140 1.2080 -5.7926 17 1 7.6864 1.3744 -7.4863 18 1 7.4190 2.5186 -5.3650 19 6 2.3110 -1.0540 0.0005 20 6 1.7706 -2.4607 0.0017 21 1 -0.3634 0.0000 1.0276 22 1 -0.3634 0.8900 -0.5138 23 1 -0.3634 -0.8900 -0.5139 24 1 4.2131 -2.7566 0.5139 25 1 5.5356 -1.5653 0.5139 26 1 4.0562 -2.5103 -1.9815 27 1 5.6331 -3.1369 -1.4438 28 1 6.6715 -2.2721 -3.4836 29 1 5.0946 -1.6451 -4.0207 30 1 7.2510 -1.2836 -6.9837 31 1 1.6403 -2.7990 1.0295 32 1 0.8096 -2.4811 -0.5122 33 1 2.4711 -3.1194 -0.5116 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385275078.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:39 Heat of formation + Delta-G solvation = -58.404806 kcal Electronic energy + Delta-G solvation = -17204.240273 eV Core-core repulsion = 14357.005315 eV Total energy + Delta-G solvation = -2847.234958 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.087 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.73486 -37.34708 -36.72811 -33.61091 -32.65052 -30.66135 -29.53535 -27.16824 -25.47489 -23.96773 -22.32672 -21.73667 -19.45504 -18.08472 -16.75848 -16.52998 -15.86283 -15.63906 -14.98588 -14.54795 -14.19669 -13.91360 -13.83895 -13.52104 -13.43844 -13.03990 -12.57837 -12.54823 -12.19214 -12.02805 -11.39160 -11.22649 -10.83491 -10.78183 -10.74865 -10.62407 -10.05535 -9.66766 -9.15044 -9.10037 -8.85704 -8.20088 -7.62901 -6.09341 -4.10130 1.23330 1.56776 1.97986 2.52818 3.03173 3.33467 3.37806 3.45681 4.34407 4.54078 4.63597 4.94172 5.05741 5.19180 5.23021 5.27454 5.28613 5.36417 5.47585 5.55820 5.64285 5.76280 5.82356 5.93472 6.08508 6.41315 6.98450 7.03664 7.38967 7.72812 7.82887 8.14739 8.54253 9.03751 9.54731 11.02329 Molecular weight = 257.09amu Principal moments of inertia in cm(-1) A = 0.025398 B = 0.005681 C = 0.005302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.176917 B = 4927.520066 C = 5280.240815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.218 4.218 3 S -0.026 6.026 4 C 0.497 3.503 5 O -0.446 6.446 6 N -0.526 5.526 7 C 0.105 3.895 8 C 0.043 3.957 9 O -0.383 6.383 10 C 0.197 3.803 11 C -0.511 4.511 12 H 0.067 0.933 13 C 0.056 3.944 14 N -0.901 5.901 15 Si 0.907 3.093 16 H -0.278 1.278 17 H -0.285 1.285 18 H -0.271 1.271 19 C 0.101 3.899 20 C -0.100 4.100 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.075 0.925 24 H 0.098 0.902 25 H 0.099 0.901 26 H 0.041 0.959 27 H 0.055 0.945 28 H 0.005 0.995 29 H 0.003 0.997 30 H 0.263 0.737 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.309 -3.638 13.961 20.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.338 4.338 3 S 0.217 5.783 4 C 0.177 3.823 5 O -0.322 6.322 6 N -0.247 5.247 7 C -0.020 4.020 8 C -0.035 4.035 9 O -0.302 6.302 10 C 0.123 3.877 11 C -0.549 4.549 12 H 0.085 0.915 13 C -0.144 4.144 14 N -0.541 5.541 15 Si 0.734 3.266 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.195 1.195 19 C -0.010 4.010 20 C -0.159 4.159 21 H 0.089 0.911 22 H 0.089 0.911 23 H 0.094 0.906 24 H 0.116 0.884 25 H 0.118 0.882 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.023 0.977 29 H 0.021 0.979 30 H 0.073 0.927 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.624 -1.908 13.864 19.531 hybrid contribution 0.789 -0.991 -0.799 1.498 sum -12.834 -2.899 13.064 18.542 Atomic orbital electron populations 1.20044 0.86189 1.03070 1.02302 1.23338 0.99347 0.92341 1.18778 1.84980 0.99140 1.12029 1.82177 1.21260 0.94101 0.84603 0.82298 1.90994 1.18928 1.71090 1.51170 1.45926 1.05644 1.07910 1.65193 1.21986 0.92611 0.89078 0.98276 1.22635 0.96891 0.91942 0.92061 1.88006 1.77302 1.35816 1.29122 1.20205 0.94124 0.97333 0.76068 1.21063 1.37349 0.99895 0.96639 0.91465 1.24932 0.96110 0.96905 0.96484 1.69964 1.47221 1.28393 1.08477 0.86336 0.79682 0.82680 0.77866 1.20398 1.21050 1.19527 1.19210 0.82505 0.97823 1.01471 1.20765 1.02156 0.89599 1.03404 0.91096 0.91072 0.90631 0.88401 0.88217 0.94068 0.92724 0.97701 0.97928 0.92707 0.89955 0.89353 0.90469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.47 10.10 36.00 0.36 -0.10 16 2 C -0.22 -2.68 6.72 -36.22 -0.24 -2.92 16 3 S -0.03 -0.41 22.97 -107.50 -2.47 -2.88 16 4 C 0.50 9.57 7.85 53.82 0.42 10.00 16 5 O -0.45 -10.39 17.31 5.07 0.09 -10.30 16 6 N -0.53 -8.38 2.58 -117.28 -0.30 -8.68 16 7 C 0.11 1.53 5.40 -4.04 -0.02 1.51 16 8 C 0.04 0.78 6.15 37.16 0.23 1.01 16 9 O -0.38 -9.66 9.63 -35.23 -0.34 -9.99 16 10 C 0.20 5.59 5.69 36.00 0.20 5.79 16 11 C -0.51 -15.84 9.43 -34.44 -0.32 -16.17 16 12 H 0.07 2.14 7.81 -52.48 -0.41 1.73 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 14 N -0.90 -27.60 13.29 55.43 0.74 -26.86 16 15 Si 0.91 22.87 29.54 -169.99 -5.02 17.84 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 19 C 0.10 1.27 6.59 -82.51 -0.54 0.73 16 20 C -0.10 -0.81 9.07 36.00 0.33 -0.48 16 21 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.08 0.49 6.77 -51.93 -0.35 0.13 16 24 H 0.10 0.95 6.83 -51.93 -0.35 0.60 16 25 H 0.10 1.56 7.80 -51.93 -0.40 1.16 16 26 H 0.04 0.71 7.63 -51.93 -0.40 0.32 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.00 0.09 8.14 -51.93 -0.42 -0.34 16 30 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.57 6.69 -51.93 -0.35 0.22 16 33 H 0.08 0.63 6.30 -51.93 -0.33 0.31 16 LS Contribution 296.08 15.07 4.46 4.46 Total: -1.00 -36.25 296.08 -6.79 -43.04 By element: Atomic # 1 Polarization: -3.33 SS G_CDS: -4.26 Total: -7.60 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 0.32 Total: 0.97 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: 0.43 Total: -35.55 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.25 Total: -20.29 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.84 kcal Atomic # 16 Polarization: -0.41 SS G_CDS: -2.47 Total: -2.88 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -36.25 -6.79 -43.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385275078.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.361 kcal (2) G-P(sol) polarization free energy of solvation -36.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds