Wall clock time and date at job start Mon Mar 30 2020 04:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.07998 * 120.00063 * 359.97438 * 7 2 1 9 9 S 1.76199 * 120.00541 * 179.97438 * 7 2 1 10 10 O 1.42104 * 106.39973 * 293.54017 * 9 7 2 11 11 O 1.42100 * 106.40017 * 66.45365 * 9 7 2 12 12 N 1.65595 * 107.22394 * 179.97438 * 9 7 2 13 13 C 1.46939 * 120.66126 * 89.99461 * 12 9 7 14 14 C 1.53398 * 109.42797 * 113.96182 * 13 12 9 15 15 C 1.50838 * 108.65112 * 45.87473 * 14 13 12 16 16 C 1.34677 * 128.08992 * 162.16224 * 15 14 13 17 17 N 1.35180 * 107.66804 * 179.91810 * 16 15 14 18 18 H 0.97005 * 126.00031 * 180.02562 * 17 16 15 19 19 N 1.40328 * 107.99216 * 0.02832 * 17 16 15 20 20 C 1.30017 * 108.07856 * 0.04684 * 19 17 16 21 21 C 1.47423 * 120.65890 * 269.72557 * 12 9 7 22 22 H 0.96999 * 120.00235 * 359.97438 * 1 2 3 23 23 H 1.08993 * 109.48578 * 233.95151 * 13 12 9 24 24 H 1.08999 * 109.47721 * 353.98177 * 13 12 9 25 25 H 1.08992 * 109.60470 * 165.62239 * 14 13 12 26 26 H 1.08999 * 109.60810 * 285.96050 * 14 13 12 27 27 H 1.07999 * 126.15912 * 359.95239 * 16 15 14 28 28 H 1.09001 * 109.93641 * 344.60265 * 21 12 9 29 29 H 1.08998 * 109.93954 * 105.83385 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 1.4647 -2.1293 0.0104 9 16 3.7666 -1.1939 0.0049 10 8 4.1673 -0.6556 -1.2477 11 8 4.1683 -0.6432 1.2518 12 7 4.2569 -2.7756 0.0132 13 6 4.4782 -3.4981 -1.2470 14 6 5.9675 -3.8387 -1.3851 15 6 6.4587 -4.3959 -0.0724 16 6 7.5747 -5.1131 0.1603 17 7 7.6120 -5.3970 1.4814 18 1 8.3035 -5.9025 1.9367 19 7 6.4747 -4.8319 2.0784 20 6 5.7860 -4.2358 1.1507 21 6 4.4858 -3.4850 1.2851 22 1 -0.4850 0.8400 0.0004 23 1 3.8936 -4.4180 -1.2461 24 1 4.1695 -2.8719 -2.0840 25 1 6.1013 -4.5821 -2.1709 26 1 6.5272 -2.9374 -1.6350 27 1 8.3078 -5.4077 -0.5760 28 1 4.5542 -2.7682 2.1034 29 1 3.6725 -4.1864 1.4711 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396825002.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:15 Heat of formation + Delta-G solvation = 2.825801 kcal Electronic energy + Delta-G solvation = -17495.055418 eV Core-core repulsion = 14546.935275 eV Total energy + Delta-G solvation = -2948.120143 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.062 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.26422 -36.61280 -35.70583 -34.42328 -33.00786 -32.17657 -31.19750 -28.59416 -26.37469 -25.54644 -22.68307 -20.99004 -19.37033 -18.52565 -17.66591 -17.05407 -16.67322 -15.36332 -15.21652 -15.03428 -14.19088 -13.70588 -13.52551 -13.41545 -13.08923 -12.85063 -12.72891 -12.03571 -11.87039 -11.51108 -11.37005 -10.93400 -10.71988 -10.59192 -10.46843 -10.27586 -9.82797 -9.37305 -9.19286 -9.08813 -8.37696 -8.29265 -6.78610 -5.32498 1.93255 1.99257 2.84586 2.92588 3.08857 3.19843 3.28512 3.96994 4.12219 4.58504 4.67329 4.83216 5.23263 5.36349 5.41848 5.57553 5.71961 5.77700 5.81624 5.95314 6.07957 6.13040 6.20153 6.37343 6.59688 6.77741 7.25301 7.37352 7.50308 7.77635 8.24213 8.72333 10.33715 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.044078 B = 0.007007 C = 0.006853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.082164 B = 3995.288696 C = 4084.633659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.153 3.847 3 Si 0.800 3.200 4 H -0.246 1.246 5 H -0.220 1.220 6 H -0.255 1.255 7 C -1.015 5.015 8 H 0.123 0.877 9 S 2.677 3.323 10 O -1.003 7.003 11 O -1.007 7.007 12 N -0.999 5.999 13 C 0.126 3.874 14 C -0.060 4.060 15 C -0.223 4.223 16 C 0.053 3.947 17 N -0.490 5.490 18 H 0.437 0.563 19 N -0.285 5.285 20 C 0.079 3.921 21 C 0.202 3.798 22 H 0.281 0.719 23 H 0.067 0.933 24 H 0.098 0.902 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.175 0.825 28 H 0.114 0.886 29 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.672 -10.021 -1.570 15.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.066 4.066 3 Si 0.620 3.380 4 H -0.170 1.170 5 H -0.142 1.142 6 H -0.179 1.179 7 C -1.149 5.149 8 H 0.141 0.859 9 S 2.780 3.220 10 O -0.993 6.993 11 O -0.998 6.998 12 N -0.834 5.834 13 C 0.000 4.000 14 C -0.100 4.100 15 C -0.235 4.235 16 C -0.092 4.092 17 N -0.198 5.198 18 H 0.280 0.720 19 N -0.108 5.108 20 C -0.091 4.091 21 C 0.074 3.926 22 H 0.091 0.909 23 H 0.086 0.914 24 H 0.116 0.884 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.192 0.808 28 H 0.132 0.868 29 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 12.146 -9.485 -0.369 15.415 hybrid contribution 0.021 0.224 -0.596 0.637 sum 12.167 -9.261 -0.965 15.321 Atomic orbital electron populations 1.69988 1.06570 1.29036 1.39599 1.24426 0.94778 0.98780 0.88637 0.87884 0.83597 0.84585 0.81921 1.16951 1.14178 1.17884 1.30522 1.15525 1.02231 1.66653 0.85924 1.01435 0.77266 0.69973 0.73276 1.93452 1.85366 1.75539 1.44948 1.93395 1.85341 1.75423 1.45613 1.57782 1.84059 1.31806 1.09773 1.21245 0.94775 0.97727 0.86208 1.20398 0.96823 1.00271 0.92474 1.20060 0.97863 1.08494 0.97084 1.22036 0.99685 1.00492 0.87011 1.46297 1.21152 1.46225 1.06150 0.71999 1.76983 0.96707 1.16299 1.20838 1.22638 0.97726 0.97435 0.91339 1.19615 0.90054 0.95690 0.87241 0.90896 0.91426 0.88358 0.90416 0.90696 0.80817 0.86794 0.89446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.72 13.96 55.43 0.77 -22.94 15 2 C 0.15 4.40 5.47 -17.82 -0.10 4.30 15 3 Si 0.80 20.55 26.53 -169.99 -4.51 16.04 15 4 H -0.25 -6.19 7.11 56.52 0.40 -5.78 15 5 H -0.22 -5.72 5.62 56.52 0.32 -5.41 15 6 H -0.25 -5.99 7.11 56.52 0.40 -5.59 15 7 C -1.01 -28.19 10.29 30.60 0.31 -27.87 15 8 H 0.12 3.43 8.06 -52.49 -0.42 3.00 15 9 S 2.68 67.03 4.21 -107.50 -0.45 66.58 15 10 O -1.00 -26.38 14.75 -57.17 -0.84 -27.23 15 11 O -1.01 -27.02 15.41 -57.17 -0.88 -27.90 15 12 N -1.00 -19.85 3.25 -114.38 -0.37 -20.22 15 13 C 0.13 2.07 6.27 -3.60 -0.02 2.05 15 14 C -0.06 -0.83 6.44 -27.61 -0.18 -1.00 15 15 C -0.22 -3.28 5.93 -104.96 -0.62 -3.90 15 16 C 0.05 0.60 11.94 -17.34 -0.21 0.39 15 17 N -0.49 -5.75 7.37 30.37 0.22 -5.52 15 18 H 0.44 3.39 8.96 -182.42 -1.64 1.75 15 19 N -0.29 -4.55 12.68 33.68 0.43 -4.13 15 20 C 0.08 1.33 7.19 -82.49 -0.59 0.74 15 21 C 0.20 3.64 6.87 -4.67 -0.03 3.61 15 22 H 0.28 7.33 8.31 -40.82 -0.34 6.99 15 23 H 0.07 0.96 8.14 -51.93 -0.42 0.54 15 24 H 0.10 1.64 7.11 -51.93 -0.37 1.28 15 25 H 0.08 0.81 8.14 -51.93 -0.42 0.39 15 26 H 0.07 1.08 8.14 -51.93 -0.42 0.66 15 27 H 0.17 1.21 8.06 -52.49 -0.42 0.78 15 28 H 0.11 2.16 6.93 -51.93 -0.36 1.80 15 29 H 0.09 1.39 8.14 -51.93 -0.42 0.96 15 LS Contribution 258.38 15.07 3.89 3.89 Total: -1.00 -34.45 258.38 -7.30 -41.75 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -4.12 Total: 1.37 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: -1.44 Total: -21.69 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: 1.05 Total: -52.81 kcal Atomic # 8 Polarization: -53.40 SS G_CDS: -1.72 Total: -55.13 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.51 Total: 16.04 kcal Atomic # 16 Polarization: 67.03 SS G_CDS: -0.45 Total: 66.58 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -34.45 -7.30 -41.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396825002.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.576 kcal (2) G-P(sol) polarization free energy of solvation -34.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds