Wall clock time and date at job start Mon Mar 30 2020 04:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.07998 * 120.00063 * 359.97438 * 7 2 1 9 9 S 1.76199 * 120.00541 * 179.97438 * 7 2 1 10 10 O 1.42104 * 106.39973 * 293.54017 * 9 7 2 11 11 O 1.42100 * 106.40017 * 66.45365 * 9 7 2 12 12 N 1.65595 * 107.22394 * 179.97438 * 9 7 2 13 13 C 1.46939 * 120.66126 * 89.99461 * 12 9 7 14 14 C 1.53398 * 109.42797 * 113.96182 * 13 12 9 15 15 C 1.50838 * 108.65112 * 45.87473 * 14 13 12 16 16 C 1.34677 * 128.08992 * 162.16224 * 15 14 13 17 17 N 1.35180 * 107.66804 * 179.91810 * 16 15 14 18 18 H 0.97005 * 126.00031 * 180.02562 * 17 16 15 19 19 N 1.40328 * 107.99216 * 0.02832 * 17 16 15 20 20 C 1.30017 * 108.07856 * 0.04684 * 19 17 16 21 21 C 1.47423 * 120.65890 * 269.72557 * 12 9 7 22 22 H 0.96999 * 120.00235 * 359.97438 * 1 2 3 23 23 H 1.08993 * 109.48578 * 233.95151 * 13 12 9 24 24 H 1.08999 * 109.47721 * 353.98177 * 13 12 9 25 25 H 1.08992 * 109.60470 * 165.62239 * 14 13 12 26 26 H 1.08999 * 109.60810 * 285.96050 * 14 13 12 27 27 H 1.07999 * 126.15912 * 359.95239 * 16 15 14 28 28 H 1.09001 * 109.93641 * 344.60265 * 21 12 9 29 29 H 1.08998 * 109.93954 * 105.83385 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 1.4647 -2.1293 0.0104 9 16 3.7666 -1.1939 0.0049 10 8 4.1673 -0.6556 -1.2477 11 8 4.1683 -0.6432 1.2518 12 7 4.2569 -2.7756 0.0132 13 6 4.4782 -3.4981 -1.2470 14 6 5.9675 -3.8387 -1.3851 15 6 6.4587 -4.3959 -0.0724 16 6 7.5747 -5.1131 0.1603 17 7 7.6120 -5.3970 1.4814 18 1 8.3035 -5.9025 1.9367 19 7 6.4747 -4.8319 2.0784 20 6 5.7860 -4.2358 1.1507 21 6 4.4858 -3.4850 1.2851 22 1 -0.4850 0.8400 0.0004 23 1 3.8936 -4.4180 -1.2461 24 1 4.1695 -2.8719 -2.0840 25 1 6.1013 -4.5821 -2.1709 26 1 6.5272 -2.9374 -1.6350 27 1 8.3078 -5.4077 -0.5760 28 1 4.5542 -2.7682 2.1034 29 1 3.6725 -4.1864 1.4711 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396825002.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:14 Heat of formation + Delta-G solvation = -25.403476 kcal Electronic energy + Delta-G solvation = -17496.279531 eV Core-core repulsion = 14546.935275 eV Total energy + Delta-G solvation = -2949.344257 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.062 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.31668 -37.96130 -37.75049 -36.49314 -35.17270 -33.32579 -32.37833 -29.75078 -28.53917 -26.84607 -23.93212 -22.04275 -20.93596 -20.28682 -19.02552 -18.68145 -18.33015 -17.20098 -16.84826 -16.33774 -15.57334 -15.41855 -15.24743 -15.00950 -14.66961 -14.32994 -13.98302 -13.54629 -13.40010 -13.10849 -13.00105 -12.89620 -12.65199 -12.53901 -11.97450 -11.73931 -11.49901 -11.32932 -11.18022 -10.43779 -9.90235 -9.32743 -8.95529 -7.51530 0.05669 0.97208 1.05683 1.15365 1.22268 1.73143 1.90185 2.00804 2.39544 2.43598 3.37668 3.52955 3.84060 3.95407 4.12178 4.32257 4.45586 4.54838 4.59043 4.66880 4.78970 4.90953 5.07073 5.23403 5.31687 5.42067 5.63704 5.77236 6.03761 6.53443 6.54607 6.72672 8.22216 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.044078 B = 0.007007 C = 0.006853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.082164 B = 3995.288696 C = 4084.633659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.109 3.891 3 Si 0.822 3.178 4 H -0.241 1.241 5 H -0.228 1.228 6 H -0.217 1.217 7 C -1.037 5.037 8 H 0.108 0.892 9 S 2.698 3.302 10 O -1.018 7.018 11 O -1.030 7.030 12 N -0.996 5.996 13 C 0.112 3.888 14 C -0.052 4.052 15 C -0.257 4.257 16 C 0.086 3.914 17 N -0.473 5.473 18 H 0.455 0.545 19 N -0.317 5.317 20 C 0.054 3.946 21 C 0.197 3.803 22 H 0.292 0.708 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.119 0.881 26 H 0.065 0.935 27 H 0.227 0.773 28 H 0.095 0.905 29 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.813 -11.204 -2.449 17.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.108 4.108 3 Si 0.639 3.361 4 H -0.164 1.164 5 H -0.150 1.150 6 H -0.139 1.139 7 C -1.169 5.169 8 H 0.126 0.874 9 S 2.800 3.200 10 O -1.008 7.008 11 O -1.020 7.020 12 N -0.834 5.834 13 C -0.013 4.013 14 C -0.091 4.091 15 C -0.269 4.269 16 C -0.061 4.061 17 N -0.184 5.184 18 H 0.302 0.698 19 N -0.141 5.141 20 C -0.114 4.114 21 C 0.069 3.931 22 H 0.102 0.898 23 H 0.108 0.892 24 H 0.107 0.893 25 H 0.137 0.863 26 H 0.083 0.917 27 H 0.244 0.756 28 H 0.113 0.887 29 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 14.260 -10.664 -1.238 17.849 hybrid contribution -0.576 0.422 -0.302 0.775 sum 13.684 -10.242 -1.540 17.161 Atomic orbital electron populations 1.70008 1.07412 1.30491 1.40382 1.25151 0.95617 1.01378 0.88607 0.87531 0.83002 0.82962 0.82593 1.16437 1.15019 1.13913 1.31036 1.17888 1.01740 1.66284 0.87420 1.00578 0.75790 0.71258 0.72365 1.93419 1.85009 1.76982 1.45380 1.93356 1.85084 1.77081 1.46495 1.57384 1.83623 1.30506 1.11935 1.21627 0.97635 0.97927 0.84073 1.20365 0.94133 1.01064 0.93582 1.20284 0.99417 1.10652 0.96523 1.22727 0.98847 0.97392 0.87140 1.46355 1.20228 1.45120 1.06659 0.69801 1.76893 0.98280 1.17358 1.21608 1.22422 0.97625 0.98496 0.92905 1.19641 0.92205 0.95568 0.85667 0.89793 0.89241 0.89259 0.86302 0.91662 0.75647 0.88708 0.88048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.71 13.96 21.45 0.30 -49.42 15 2 C 0.11 6.34 5.47 84.65 0.46 6.81 15 3 Si 0.82 41.42 26.53 68.60 1.82 43.23 15 4 H -0.24 -11.86 7.11 99.48 0.71 -11.15 15 5 H -0.23 -11.74 5.62 99.48 0.56 -11.18 15 6 H -0.22 -9.56 7.11 99.48 0.71 -8.86 15 7 C -1.04 -59.02 10.29 67.73 0.70 -58.33 15 8 H 0.11 6.25 8.06 -2.91 -0.02 6.23 15 9 S 2.70 136.91 4.21 -56.49 -0.24 136.67 15 10 O -1.02 -53.80 14.75 -128.00 -1.89 -55.69 15 11 O -1.03 -56.20 15.41 -128.00 -1.97 -58.17 15 12 N -1.00 -39.68 3.25 -515.80 -1.68 -41.36 15 13 C 0.11 3.54 6.27 86.43 0.54 4.08 15 14 C -0.05 -1.29 6.44 30.03 0.19 -1.10 15 15 C -0.26 -6.80 5.93 -20.09 -0.12 -6.92 15 16 C 0.09 1.54 11.94 83.36 1.00 2.54 15 17 N -0.47 -9.46 7.37 -57.83 -0.43 -9.89 15 18 H 0.45 5.33 8.96 -213.17 -1.91 3.42 15 19 N -0.32 -9.64 12.68 -47.35 -0.60 -10.24 15 20 C 0.05 1.77 7.19 43.39 0.31 2.08 15 21 C 0.20 7.17 6.87 85.47 0.59 7.75 15 22 H 0.29 15.27 8.31 -92.71 -0.77 14.50 15 23 H 0.09 2.40 8.14 -2.39 -0.02 2.38 15 24 H 0.09 2.95 7.11 -2.39 -0.02 2.93 15 25 H 0.12 1.95 8.14 -2.39 -0.02 1.93 15 26 H 0.06 1.74 8.14 -2.39 -0.02 1.72 15 27 H 0.23 1.59 8.06 -2.91 -0.02 1.56 15 28 H 0.09 3.74 6.93 -2.39 -0.02 3.73 15 29 H 0.10 3.28 8.14 -2.39 -0.02 3.26 15 Total: -1.00 -75.60 258.38 -1.88 -77.48 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -0.87 Total: 10.46 kcal Atomic # 6 Polarization: -46.76 SS G_CDS: 3.67 Total: -43.09 kcal Atomic # 7 Polarization: -108.50 SS G_CDS: -2.40 Total: -110.90 kcal Atomic # 8 Polarization: -109.99 SS G_CDS: -3.86 Total: -113.85 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 1.82 Total: 43.23 kcal Atomic # 16 Polarization: 136.91 SS G_CDS: -0.24 Total: 136.67 kcal Total: -75.60 -1.88 -77.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396825002.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.073 kcal (2) G-P(sol) polarization free energy of solvation -75.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds