Wall clock time and date at job start Mon Mar 30 2020 04:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00128 * 2 1 4 4 H 1.48495 * 109.47084 * 270.00283 * 3 2 1 5 5 H 1.48500 * 109.47113 * 30.00354 * 3 2 1 6 6 H 1.48502 * 109.47181 * 150.00164 * 3 2 1 7 7 C 1.37876 * 119.99799 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99941 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00180 * 359.97438 * 7 2 1 10 10 C 1.53502 * 114.20401 * 179.97438 * 9 7 2 11 11 N 1.47066 * 87.98230 * 220.14620 * 10 9 7 12 12 C 1.34780 * 136.06028 * 207.08398 * 11 10 9 13 13 O 1.21276 * 120.00041 * 184.23166 * 12 11 10 14 14 C 1.50701 * 119.99685 * 4.23135 * 12 11 10 15 15 O 1.42899 * 108.73225 * 322.52679 * 14 12 11 16 16 C 1.52938 * 108.88582 * 204.01660 * 14 12 11 17 17 C 1.55159 * 108.95832 * 209.10396 * 16 14 12 18 18 S 1.83981 * 100.90838 * 41.43909 * 17 16 14 19 19 C 1.53711 * 108.88857 * 81.03261 * 14 12 11 20 20 C 1.47065 * 87.88557 * 27.34553 * 11 10 9 21 21 H 0.96995 * 119.99601 * 359.97438 * 1 2 3 22 22 H 1.08992 * 113.28050 * 313.06619 * 9 7 2 23 23 H 1.09006 * 113.46215 * 105.37042 * 10 9 7 24 24 H 1.08999 * 113.46949 * 334.92814 * 10 9 7 25 25 H 0.96695 * 114.00604 * 62.64203 * 15 14 12 26 26 H 1.08996 * 109.60316 * 329.03323 * 16 14 12 27 27 H 1.09005 * 109.60333 * 89.35926 * 16 14 12 28 28 H 1.08995 * 111.12918 * 159.35223 * 17 16 14 29 29 H 1.09004 * 111.13205 * 283.48389 * 17 16 14 30 30 H 1.09000 * 110.34046 * 242.49027 * 19 14 12 31 31 H 1.08997 * 110.33884 * 4.74920 * 19 14 12 32 32 H 1.09004 * 113.46803 * 87.43638 * 20 11 10 33 33 H 1.09007 * 113.46899 * 217.87364 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.1488 -3.7443 -0.0018 11 7 1.2065 -4.3590 -0.9489 12 6 0.8308 -5.6134 -1.2680 13 8 0.0535 -5.8002 -2.1799 14 6 1.3766 -6.7839 -0.4914 15 8 2.7438 -6.5227 -0.1681 16 6 1.3053 -8.0356 -1.3672 17 6 1.1394 -9.2800 -0.4554 18 16 -0.0695 -8.6483 0.7793 19 6 0.5767 -6.9323 0.8128 20 6 0.8594 -3.0028 -1.3995 21 1 -0.4849 0.8400 0.0004 22 1 0.4438 -2.5306 0.7312 23 1 2.1884 -4.2517 0.9621 24 1 3.1369 -3.5665 -0.4261 25 1 2.8731 -5.7521 0.4015 26 1 0.4533 -7.9611 -2.0429 27 1 2.2241 -8.1297 -1.9461 28 1 0.7290 -10.1227 -1.0117 29 1 2.0833 -9.5480 0.0193 30 1 1.2280 -6.7895 1.6751 31 1 -0.2462 -6.2179 0.8359 32 1 1.5076 -2.6295 -2.1924 33 1 -0.1995 -2.8785 -1.6266 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598030606.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:43 Heat of formation + Delta-G solvation = -44.376133 kcal Electronic energy + Delta-G solvation = -17520.259810 eV Core-core repulsion = 14673.633181 eV Total energy + Delta-G solvation = -2846.626629 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.087 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.35779 -37.99292 -36.82417 -33.51245 -32.76143 -30.03212 -28.90534 -25.90529 -25.29680 -24.94523 -21.76745 -20.09563 -19.22811 -17.43454 -16.94092 -16.57394 -16.30072 -15.61456 -14.84941 -14.56087 -14.50445 -14.17127 -13.41971 -13.19261 -12.95022 -12.48832 -12.35226 -12.10991 -11.85933 -11.73545 -11.45682 -11.38634 -11.12200 -11.03525 -10.81938 -10.41761 -10.15787 -9.74175 -9.29039 -8.98275 -8.68125 -8.09022 -7.80147 -6.26489 -4.33775 1.66637 2.11561 2.81768 3.17577 3.20699 3.27490 3.29629 4.02717 4.25535 4.29828 4.50680 4.62490 4.86515 5.02299 5.03451 5.23912 5.34894 5.52902 5.61996 5.67745 5.91186 5.98256 6.05149 6.19831 6.36880 6.57439 6.75086 7.32556 7.40182 7.69748 8.04058 8.25565 8.46079 8.70097 9.34070 10.83063 Molecular weight = 257.09amu Principal moments of inertia in cm(-1) A = 0.045620 B = 0.004835 C = 0.004827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.622968 B = 5789.890206 C = 5799.659920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.070 3.930 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.522 4.522 8 H 0.065 0.935 9 C 0.040 3.960 10 C 0.083 3.917 11 N -0.639 5.639 12 C 0.513 3.487 13 O -0.545 6.545 14 C 0.126 3.874 15 O -0.551 6.551 16 C -0.110 4.110 17 C -0.064 4.064 18 S -0.279 6.279 19 C -0.094 4.094 20 C 0.104 3.896 21 H 0.266 0.734 22 H 0.070 0.930 23 H 0.057 0.943 24 H 0.085 0.915 25 H 0.382 0.618 26 H 0.112 0.888 27 H 0.096 0.904 28 H 0.111 0.889 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.075 0.925 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.126 -12.561 1.474 13.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.135 4.135 3 Si 0.724 3.276 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.560 4.560 8 H 0.083 0.917 9 C 0.021 3.979 10 C -0.039 4.039 11 N -0.373 5.373 12 C 0.300 3.700 13 O -0.424 6.424 14 C 0.080 3.920 15 O -0.361 6.361 16 C -0.149 4.149 17 C -0.212 4.212 18 S -0.053 6.053 19 C -0.242 4.242 20 C -0.017 4.017 21 H 0.075 0.925 22 H 0.088 0.912 23 H 0.075 0.925 24 H 0.103 0.897 25 H 0.234 0.766 26 H 0.130 0.870 27 H 0.114 0.886 28 H 0.129 0.871 29 H 0.113 0.887 30 H 0.125 0.875 31 H 0.128 0.872 32 H 0.093 0.907 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.662 -13.794 1.182 14.098 hybrid contribution 1.266 2.021 -0.239 2.397 sum 3.928 -11.773 0.943 12.447 Atomic orbital electron populations 1.69948 1.06147 1.27377 1.48427 1.25041 0.94859 0.99550 0.94023 0.86510 0.79849 0.82859 0.78341 1.20448 1.21071 1.19622 1.20866 0.92992 0.89420 1.52747 0.91667 1.20390 0.94311 0.90932 0.92317 1.23564 0.95265 0.94621 0.90453 1.50068 1.41988 1.04891 1.40370 1.20524 0.82444 0.82941 0.84114 1.90659 1.36922 1.84152 1.30648 1.21978 0.82472 0.94952 0.92575 1.86614 1.23546 1.53332 1.72620 1.22290 1.05974 0.88809 0.97795 1.24363 0.99946 1.00131 0.96787 1.87768 1.47188 1.10596 1.59756 1.24694 1.03415 0.96710 0.99429 1.23710 1.00459 0.75731 1.01812 0.92454 0.91183 0.92494 0.89737 0.76566 0.86982 0.88594 0.87087 0.88672 0.87485 0.87241 0.90730 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.70 13.26 55.43 0.74 -22.96 16 2 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 19.52 29.54 -169.99 -5.02 14.49 16 4 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.29 -6.25 7.11 56.52 0.40 -5.84 16 6 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.52 -12.61 8.83 -34.44 -0.30 -12.91 16 8 H 0.07 1.52 7.81 -52.48 -0.41 1.11 16 9 C 0.04 0.87 3.79 -91.12 -0.35 0.52 16 10 C 0.08 1.43 6.15 -8.51 -0.05 1.38 16 11 N -0.64 -12.20 3.66 -185.06 -0.68 -12.88 16 12 C 0.51 9.68 6.61 -10.98 -0.07 9.60 16 13 O -0.54 -11.98 16.26 5.56 0.09 -11.89 16 14 C 0.13 1.87 1.16 -91.43 -0.11 1.76 16 15 O -0.55 -7.70 12.54 -35.23 -0.44 -8.15 16 16 C -0.11 -1.46 5.41 -25.62 -0.14 -1.60 16 17 C -0.06 -0.70 7.52 38.30 0.29 -0.41 16 18 S -0.28 -3.74 23.22 -107.50 -2.50 -6.24 16 19 C -0.09 -1.29 6.70 37.53 0.25 -1.03 16 20 C 0.10 2.26 8.20 -8.37 -0.07 2.19 16 21 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 22 H 0.07 1.67 8.11 -51.93 -0.42 1.25 16 23 H 0.06 0.80 6.86 -51.93 -0.36 0.45 16 24 H 0.08 1.38 8.10 -51.93 -0.42 0.96 16 25 H 0.38 4.69 5.29 45.56 0.24 4.93 16 26 H 0.11 1.65 6.76 -51.93 -0.35 1.30 16 27 H 0.10 1.19 8.04 -51.93 -0.42 0.77 16 28 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.11 1.27 7.89 -51.93 -0.41 0.86 16 31 H 0.11 1.64 7.63 -51.93 -0.40 1.24 16 32 H 0.07 1.61 8.10 -51.93 -0.42 1.19 16 33 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 286.95 15.07 4.32 4.32 Total: -1.00 -28.48 286.95 -7.90 -36.38 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -3.77 Total: 5.76 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -0.65 Total: 1.16 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.06 Total: -35.84 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.35 Total: -20.04 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.49 kcal Atomic # 16 Polarization: -3.74 SS G_CDS: -2.50 Total: -6.24 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.48 -7.90 -36.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598030606.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.997 kcal (2) G-P(sol) polarization free energy of solvation -28.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds