Wall clock time and date at job start Mon Mar 30 2020 04:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 119.99558 * 2 1 4 4 H 1.48504 * 109.47068 * 269.99763 * 3 2 1 5 5 H 1.48498 * 109.47357 * 29.99505 * 3 2 1 6 6 H 1.48504 * 109.47199 * 149.99854 * 3 2 1 7 7 C 1.38795 * 120.00417 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99911 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99753 * 359.97438 * 7 2 1 10 10 C 1.80998 * 99.99770 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.47140 * 180.02562 * 10 9 7 12 12 O 1.21275 * 119.99692 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99941 * 180.02562 * 11 10 9 14 14 C 1.47570 * 125.66032 * 0.02562 * 13 11 10 15 15 C 1.55207 * 105.04979 * 203.85249 * 14 13 11 16 16 C 1.53585 * 101.36301 * 324.65081 * 15 14 13 17 17 C 1.51719 * 116.89900 * 261.69017 * 16 15 14 18 18 O 1.43665 * 88.04853 * 218.01038 * 17 16 15 19 19 C 1.43667 * 88.75685 * 26.63828 * 18 17 16 20 20 C 1.47435 * 125.65774 * 180.02562 * 13 11 10 21 21 H 0.96998 * 120.00265 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.47457 * 60.00598 * 10 9 7 23 23 H 1.08998 * 109.47583 * 300.00176 * 10 9 7 24 24 H 1.09000 * 110.32749 * 322.74983 * 14 13 11 25 25 H 1.08997 * 110.32090 * 84.85573 * 14 13 11 26 26 H 1.09001 * 111.04279 * 206.62584 * 15 14 13 27 27 H 1.08999 * 111.04140 * 82.67391 * 15 14 13 28 28 H 1.09000 * 113.46142 * 103.21371 * 17 16 15 29 29 H 1.09006 * 113.45291 * 332.80712 * 17 16 15 30 30 H 1.08996 * 113.45592 * 88.15628 * 19 18 17 31 31 H 1.08998 * 113.45262 * 218.50770 * 19 18 17 32 32 H 1.08998 * 110.00771 * 58.45087 * 20 13 11 33 33 H 1.09000 * 110.03282 * 297.11945 * 20 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6528 0.6999 6 1 3.5478 1.4404 0.7001 7 6 2.0104 -1.2019 0.0005 8 1 3.0904 -1.2019 0.0010 9 16 1.1294 -2.7279 0.0019 10 6 2.5160 -3.8913 0.0029 11 6 1.9876 -5.3026 0.0036 12 8 0.7914 -5.5022 0.0038 13 7 2.8445 -6.3430 0.0049 14 6 4.3169 -6.2448 0.0064 15 6 4.8109 -7.5860 -0.5986 16 6 3.7660 -8.5687 -0.0497 17 6 4.1516 -9.3619 1.1848 18 8 3.4611 -10.4868 0.6176 19 6 3.7142 -9.9438 -0.6882 20 6 2.4662 -7.7680 0.0051 21 1 -0.4850 0.8400 -0.0004 22 1 3.1246 -3.7305 0.8929 23 1 3.1247 -3.7320 -0.8871 24 1 4.6413 -5.4080 -0.6123 25 1 4.6875 -6.1277 1.0248 26 1 5.8091 -7.8340 -0.2378 27 1 4.7864 -7.5565 -1.6879 28 1 3.6938 -8.9887 2.1010 29 1 5.2261 -9.5167 1.2829 30 1 4.6665 -10.2611 -1.1129 31 1 2.8813 -10.0709 -1.3798 32 1 1.8535 -7.9913 -0.8682 33 1 1.9183 -8.0087 0.9161 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598403517.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:37 Heat of formation + Delta-G solvation = -39.425934 kcal Electronic energy + Delta-G solvation = -16753.980445 eV Core-core repulsion = 13907.568473 eV Total energy + Delta-G solvation = -2846.411973 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.087 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.69982 -39.14396 -36.57650 -32.44152 -31.93941 -29.79921 -28.88504 -26.72883 -25.73357 -25.24956 -23.06557 -19.54832 -19.30811 -17.71833 -16.88236 -16.64088 -16.26016 -15.67487 -15.51489 -14.93879 -14.81217 -14.11229 -13.87784 -13.66990 -13.04017 -12.76961 -12.55923 -12.37352 -12.22699 -11.82421 -11.75277 -11.07304 -11.03377 -10.88342 -10.76951 -10.73384 -10.14676 -9.82464 -9.43034 -9.07723 -8.56402 -8.24740 -6.51759 -6.22613 -3.93660 2.83501 3.03316 3.21485 3.24231 3.29309 3.50891 3.61860 3.72270 4.03610 4.19393 4.36862 4.73062 4.88112 4.93972 4.99571 5.12517 5.16823 5.22909 5.29795 5.43779 5.52503 5.54306 5.55744 5.63176 5.69444 5.77252 5.79178 5.89721 6.11010 6.34257 7.58110 7.62319 8.33992 8.52392 9.22518 10.84841 Molecular weight = 257.09amu Principal moments of inertia in cm(-1) A = 0.054273 B = 0.004060 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.785491 B = 6894.074180 C = 7238.843762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.146 4.146 11 C 0.548 3.452 12 O -0.514 6.514 13 N -0.628 5.628 14 C 0.101 3.899 15 C -0.121 4.121 16 C -0.146 4.146 17 C 0.046 3.954 18 O -0.369 6.369 19 C 0.048 3.952 20 C 0.140 3.860 21 H 0.269 0.731 22 H 0.089 0.911 23 H 0.089 0.911 24 H 0.081 0.919 25 H 0.069 0.931 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.916 -16.640 -0.772 21.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.296 4.296 11 C 0.337 3.663 12 O -0.388 6.388 13 N -0.366 5.366 14 C -0.022 4.022 15 C -0.159 4.159 16 C -0.147 4.147 17 C -0.031 4.031 18 O -0.287 6.287 19 C -0.029 4.029 20 C 0.017 3.983 21 H 0.078 0.922 22 H 0.107 0.893 23 H 0.107 0.893 24 H 0.100 0.900 25 H 0.088 0.912 26 H 0.106 0.894 27 H 0.103 0.897 28 H 0.108 0.892 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.753 -16.984 -0.654 20.113 hybrid contribution 2.133 1.406 -0.055 2.555 sum 12.885 -15.578 -0.709 20.229 Atomic orbital electron populations 1.70018 1.05965 1.27485 1.46789 1.24991 0.95021 0.99022 0.94501 0.86165 0.79409 0.81548 0.78356 1.20256 1.20731 1.19683 1.22856 0.94890 0.91595 1.59052 0.90925 1.85424 1.04913 0.96345 1.96714 1.23507 1.06494 0.94858 1.04790 1.20055 0.85664 0.85418 0.75191 1.90716 1.14950 1.85110 1.48007 1.48656 1.06647 1.05338 1.75967 1.22338 0.80442 0.98231 1.01172 1.22581 0.98015 0.93732 1.01563 1.23106 0.97628 0.95821 0.98145 1.23538 0.97933 0.84381 0.97275 1.89954 1.74723 1.45045 1.19019 1.23451 1.02261 0.89229 0.87997 1.21246 0.93971 0.80118 1.02953 0.92155 0.89268 0.89283 0.90040 0.91226 0.89376 0.89657 0.89152 0.89690 0.89611 0.89121 0.90692 0.90839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.17 13.22 55.49 0.73 -25.44 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.30 29.55 -169.99 -5.02 16.28 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.54 -15.25 9.50 30.94 0.29 -14.95 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -2.99 5.17 36.01 0.19 -2.81 16 11 C 0.55 10.68 7.87 -10.98 -0.09 10.60 16 12 O -0.51 -12.12 16.19 5.56 0.09 -12.03 16 13 N -0.63 -9.05 3.34 -170.84 -0.57 -9.62 16 14 C 0.10 1.03 6.71 -2.29 -0.02 1.01 16 15 C -0.12 -0.87 6.53 -25.26 -0.16 -1.04 16 16 C -0.15 -1.26 1.12 -155.64 -0.17 -1.43 16 17 C 0.05 0.37 8.07 26.04 0.21 0.58 16 18 O -0.37 -3.91 12.74 -35.23 -0.45 -4.35 16 19 C 0.05 0.38 8.16 26.03 0.21 0.59 16 20 C 0.14 1.73 6.43 -3.66 -0.02 1.71 16 21 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 22 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 23 H 0.09 1.68 7.85 -51.92 -0.41 1.27 16 24 H 0.08 0.81 7.49 -51.93 -0.39 0.42 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.09 0.44 7.99 -51.93 -0.41 0.02 16 27 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.09 0.76 8.08 -51.93 -0.42 0.34 16 29 H 0.09 0.51 8.04 -51.93 -0.42 0.09 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.09 0.68 8.10 -51.93 -0.42 0.26 16 32 H 0.07 0.96 8.09 -51.93 -0.42 0.54 16 33 H 0.07 0.98 7.94 -51.93 -0.41 0.57 16 LS Contribution 294.24 15.07 4.43 4.43 Total: -1.00 -34.81 294.24 -7.19 -42.00 By element: Atomic # 1 Polarization: 0.88 SS G_CDS: -4.54 Total: -3.66 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: 0.34 Total: -3.73 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: 0.16 Total: -35.06 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.36 Total: -16.39 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -34.81 -7.19 -42.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598403517.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.573 kcal (2) G-P(sol) polarization free energy of solvation -34.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds