Wall clock time and date at job start Mon Mar 30 2020 04:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 119.99558 * 2 1 4 4 H 1.48504 * 109.47068 * 269.99763 * 3 2 1 5 5 H 1.48498 * 109.47357 * 29.99505 * 3 2 1 6 6 H 1.48504 * 109.47199 * 149.99854 * 3 2 1 7 7 C 1.38795 * 120.00417 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99911 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99753 * 359.97438 * 7 2 1 10 10 C 1.80998 * 99.99770 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.47140 * 180.02562 * 10 9 7 12 12 O 1.21275 * 119.99692 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99941 * 180.02562 * 11 10 9 14 14 C 1.47570 * 125.66032 * 0.02562 * 13 11 10 15 15 C 1.55207 * 105.04979 * 203.85249 * 14 13 11 16 16 C 1.53585 * 101.36301 * 324.65081 * 15 14 13 17 17 C 1.51719 * 116.89900 * 261.69017 * 16 15 14 18 18 O 1.43665 * 88.04853 * 218.01038 * 17 16 15 19 19 C 1.43667 * 88.75685 * 26.63828 * 18 17 16 20 20 C 1.47435 * 125.65774 * 180.02562 * 13 11 10 21 21 H 0.96998 * 120.00265 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.47457 * 60.00598 * 10 9 7 23 23 H 1.08998 * 109.47583 * 300.00176 * 10 9 7 24 24 H 1.09000 * 110.32749 * 322.74983 * 14 13 11 25 25 H 1.08997 * 110.32090 * 84.85573 * 14 13 11 26 26 H 1.09001 * 111.04279 * 206.62584 * 15 14 13 27 27 H 1.08999 * 111.04140 * 82.67391 * 15 14 13 28 28 H 1.09000 * 113.46142 * 103.21371 * 17 16 15 29 29 H 1.09006 * 113.45291 * 332.80712 * 17 16 15 30 30 H 1.08996 * 113.45592 * 88.15628 * 19 18 17 31 31 H 1.08998 * 113.45262 * 218.50770 * 19 18 17 32 32 H 1.08998 * 110.00771 * 58.45087 * 20 13 11 33 33 H 1.09000 * 110.03282 * 297.11945 * 20 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6528 0.6999 6 1 3.5478 1.4404 0.7001 7 6 2.0104 -1.2019 0.0005 8 1 3.0904 -1.2019 0.0010 9 16 1.1294 -2.7279 0.0019 10 6 2.5160 -3.8913 0.0029 11 6 1.9876 -5.3026 0.0036 12 8 0.7914 -5.5022 0.0038 13 7 2.8445 -6.3430 0.0049 14 6 4.3169 -6.2448 0.0064 15 6 4.8109 -7.5860 -0.5986 16 6 3.7660 -8.5687 -0.0497 17 6 4.1516 -9.3619 1.1848 18 8 3.4611 -10.4868 0.6176 19 6 3.7142 -9.9438 -0.6882 20 6 2.4662 -7.7680 0.0051 21 1 -0.4850 0.8400 -0.0004 22 1 3.1246 -3.7305 0.8929 23 1 3.1247 -3.7320 -0.8871 24 1 4.6413 -5.4080 -0.6123 25 1 4.6875 -6.1277 1.0248 26 1 5.8091 -7.8340 -0.2378 27 1 4.7864 -7.5565 -1.6879 28 1 3.6938 -8.9887 2.1010 29 1 5.2261 -9.5167 1.2829 30 1 4.6665 -10.2611 -1.1129 31 1 2.8813 -10.0709 -1.3798 32 1 1.8535 -7.9913 -0.8682 33 1 1.9183 -8.0087 0.9161 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598403517.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:36 Heat of formation + Delta-G solvation = -64.805337 kcal Electronic energy + Delta-G solvation = -16755.080979 eV Core-core repulsion = 13907.568473 eV Total energy + Delta-G solvation = -2847.512506 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.087 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.44383 -40.48142 -37.72413 -34.59514 -33.05421 -30.99330 -29.97637 -27.72683 -27.32364 -26.46293 -23.91066 -20.90609 -20.10145 -19.56058 -18.14193 -17.63402 -17.08482 -16.88950 -16.62413 -16.52128 -16.23807 -15.67715 -15.26808 -14.63892 -14.42611 -13.98125 -13.68926 -13.63459 -13.17777 -13.06166 -12.90649 -12.88256 -12.62566 -12.51281 -11.76006 -11.51655 -11.38676 -11.14778 -11.08108 -10.73103 -10.29669 -9.78003 -8.70033 -8.35273 -6.14782 1.21717 1.43029 1.44199 1.51289 1.56040 2.02035 2.26556 2.90088 2.99066 3.04191 3.17995 3.36368 3.63830 3.81977 4.06455 4.20450 4.28739 4.39921 4.41840 4.48376 4.56017 4.61150 4.70118 4.71309 4.81723 4.94749 5.06838 5.07462 5.16648 5.28131 5.40852 6.18991 6.33173 7.05358 7.05980 8.74158 Molecular weight = 257.09amu Principal moments of inertia in cm(-1) A = 0.054273 B = 0.004060 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.785491 B = 6894.074180 C = 7238.843762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 1.001 2.999 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.256 1.256 7 C -0.546 4.546 8 H 0.085 0.915 9 S -0.155 6.155 10 C -0.117 4.117 11 C 0.544 3.456 12 O -0.570 6.570 13 N -0.618 5.618 14 C 0.087 3.913 15 C -0.105 4.105 16 C -0.140 4.140 17 C 0.048 3.952 18 O -0.402 6.402 19 C 0.051 3.949 20 C 0.133 3.867 21 H 0.271 0.729 22 H 0.108 0.892 23 H 0.109 0.891 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.125 0.875 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.119 0.881 30 H 0.118 0.882 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.698 -17.047 -1.046 23.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.191 4.191 3 Si 0.822 3.178 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.180 1.180 7 C -0.694 4.694 8 H 0.103 0.897 9 S 0.072 5.928 10 C -0.268 4.268 11 C 0.332 3.668 12 O -0.448 6.448 13 N -0.353 5.353 14 C -0.035 4.035 15 C -0.143 4.143 16 C -0.141 4.141 17 C -0.029 4.029 18 O -0.321 6.321 19 C -0.025 4.025 20 C 0.011 3.989 21 H 0.080 0.920 22 H 0.126 0.874 23 H 0.128 0.872 24 H 0.106 0.894 25 H 0.104 0.896 26 H 0.144 0.856 27 H 0.111 0.889 28 H 0.099 0.901 29 H 0.136 0.864 30 H 0.136 0.864 31 H 0.105 0.895 32 H 0.082 0.918 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 14.598 -17.434 -0.930 22.758 hybrid contribution 0.993 1.383 0.041 1.703 sum 15.591 -16.052 -0.889 22.395 Atomic orbital electron populations 1.70190 1.08071 1.28671 1.47943 1.26155 0.95955 1.03385 0.93617 0.84926 0.78212 0.75814 0.78848 1.19219 1.20360 1.18015 1.23193 0.95372 0.91751 1.59039 0.89739 1.85644 1.10632 0.99428 1.97055 1.23289 1.03382 0.93598 1.06540 1.19867 0.85419 0.86107 0.75375 1.90690 1.17286 1.85828 1.51037 1.48608 1.08387 1.05083 1.73266 1.22785 0.77305 1.00587 1.02789 1.22617 0.98971 0.90742 1.01936 1.22954 0.95725 0.96120 0.99322 1.23713 0.99491 0.83244 0.96406 1.89943 1.75571 1.46026 1.20586 1.23633 1.03789 0.87994 0.87120 1.21376 0.96364 0.79492 1.01683 0.91963 0.87415 0.87236 0.89376 0.89585 0.85637 0.88862 0.90120 0.86357 0.86379 0.89463 0.91769 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.31 13.22 21.65 0.29 -56.03 16 2 C 0.01 0.77 5.49 84.86 0.47 1.24 16 3 Si 1.00 43.31 29.55 68.60 2.03 45.33 16 4 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 5 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 7 C -0.55 -31.21 9.50 67.95 0.65 -30.56 16 8 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 9 S -0.15 -8.74 20.57 -56.49 -1.16 -9.91 16 10 C -0.12 -4.77 5.17 71.24 0.37 -4.40 16 11 C 0.54 21.48 7.87 87.66 0.69 22.17 16 12 O -0.57 -28.19 16.19 -3.02 -0.05 -28.24 16 13 N -0.62 -17.26 3.34 -812.82 -2.72 -19.98 16 14 C 0.09 1.48 6.71 86.93 0.58 2.06 16 15 C -0.11 -1.05 6.53 31.55 0.21 -0.85 16 16 C -0.14 -2.04 1.12 -52.91 -0.06 -2.10 16 17 C 0.05 0.65 8.07 64.78 0.52 1.17 16 18 O -0.40 -7.76 12.74 -148.98 -1.90 -9.66 16 19 C 0.05 0.66 8.16 64.78 0.53 1.19 16 20 C 0.13 3.26 6.43 86.12 0.55 3.81 16 21 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 22 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 23 H 0.11 3.98 7.85 -2.40 -0.02 3.96 16 24 H 0.09 1.43 7.49 -2.39 -0.02 1.41 16 25 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.13 0.44 7.99 -2.39 -0.02 0.42 16 27 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.08 1.23 8.08 -2.39 -0.02 1.21 16 29 H 0.12 0.85 8.04 -2.38 -0.02 0.83 16 30 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.09 1.17 8.10 -2.39 -0.02 1.15 16 32 H 0.06 1.70 8.09 -2.39 -0.02 1.68 16 33 H 0.06 1.56 7.94 -2.39 -0.02 1.54 16 Total: -1.00 -79.72 294.24 2.09 -77.63 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: 1.10 Total: 7.12 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: 4.50 Total: -6.27 kcal Atomic # 7 Polarization: -73.57 SS G_CDS: -2.43 Total: -76.01 kcal Atomic # 8 Polarization: -35.95 SS G_CDS: -1.95 Total: -37.90 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 16 Polarization: -8.74 SS G_CDS: -1.16 Total: -9.91 kcal Total: -79.72 2.09 -77.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598403517.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.823 kcal (2) G-P(sol) polarization free energy of solvation -79.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds