Wall clock time and date at job start Mon Mar 30 2020 04:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86797 * 119.99715 * 2 1 4 4 H 1.48501 * 109.47097 * 269.99568 * 3 2 1 5 5 H 1.48498 * 109.47380 * 29.99919 * 3 2 1 6 6 H 1.48505 * 109.47175 * 149.99502 * 3 2 1 7 7 C 1.38954 * 120.00323 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00031 * 180.02562 * 7 2 1 9 9 N 1.37103 * 119.99520 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99442 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00548 * 0.02562 * 10 9 7 12 12 C 1.50696 * 119.99589 * 179.72473 * 10 9 7 13 13 N 1.46501 * 109.47162 * 174.86003 * 12 10 9 14 14 C 1.33946 * 125.41204 * 274.18514 * 13 12 10 15 15 O 1.21581 * 123.04408 * 0.02562 * 14 13 12 16 16 N 1.33954 * 113.91577 * 179.97438 * 14 13 12 17 17 C 1.47053 * 109.18056 * 0.02562 * 16 14 13 18 18 C 1.47062 * 125.40972 * 93.87933 * 13 12 10 19 19 H 1.09000 * 110.54386 * 298.59918 * 18 13 12 20 20 C 1.50700 * 110.54881 * 61.40456 * 18 13 12 21 21 O 1.20821 * 119.99620 * 26.29955 * 20 18 13 22 22 O 1.34223 * 119.99849 * 206.29954 * 20 18 13 23 23 H 0.96991 * 120.00604 * 0.02562 * 1 2 3 24 24 H 0.96992 * 120.00361 * 0.02562 * 9 7 2 25 25 H 1.08996 * 109.47697 * 294.86237 * 12 10 9 26 26 H 1.09000 * 109.47667 * 54.86419 * 12 10 9 27 27 H 0.97000 * 125.41161 * 179.97438 * 16 14 13 28 28 H 1.08994 * 110.54865 * 118.59064 * 17 16 14 29 29 H 1.09001 * 110.54599 * 241.25716 * 17 16 14 30 30 H 0.96703 * 116.99831 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4403 0.7002 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5579 0.0010 12 6 1.2439 -4.8629 0.0068 13 7 2.1906 -5.9739 -0.1182 14 6 2.6636 -6.4646 -1.2713 15 8 2.3459 -6.0242 -2.3591 16 7 3.5192 -7.4837 -1.1175 17 6 3.6842 -7.7638 0.3166 18 6 2.7774 -6.7236 1.0027 19 1 3.3647 -6.0621 1.6395 20 6 1.6998 -7.4100 1.8018 21 8 0.6547 -7.7093 1.2745 22 8 1.9010 -7.6890 3.0992 23 1 -0.4850 0.8399 -0.0004 24 1 0.3535 -2.3907 -0.0002 25 1 0.6919 -4.9594 0.9417 26 1 0.5465 -4.8839 -0.8306 27 1 3.9594 -7.9616 -1.8377 28 1 3.3551 -8.7765 0.5490 29 1 4.7223 -7.6214 0.6173 30 1 1.1810 -8.1303 3.5702 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690662876.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:37 Heat of formation + Delta-G solvation = -160.289205 kcal Electronic energy + Delta-G solvation = -19357.860356 eV Core-core repulsion = 15959.914144 eV Total energy + Delta-G solvation = -3397.946212 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.089 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.62787 -40.82584 -39.95986 -37.60744 -37.04510 -36.10480 -35.03920 -33.32356 -31.12599 -29.20627 -26.56767 -25.60443 -22.78096 -22.31500 -20.84292 -19.92986 -19.42487 -18.83865 -18.29713 -17.64894 -17.30137 -16.76902 -16.50028 -16.20947 -15.94525 -15.66921 -15.20233 -15.07179 -14.60176 -14.41199 -13.76019 -13.53512 -13.44549 -13.15584 -12.83948 -12.57396 -12.45067 -12.11824 -11.92018 -11.55151 -11.51651 -10.90266 -10.34846 -10.06328 -9.67179 -8.48832 -5.98792 0.88955 1.33579 1.37215 1.42207 1.54871 1.70569 1.94820 2.14254 2.30761 2.87076 3.15417 3.17371 3.20595 3.71133 4.01187 4.15393 4.28745 4.29917 4.42199 4.65327 4.80475 5.31488 5.38767 5.53044 5.94092 6.08989 6.32613 6.53000 6.92240 7.07018 7.41476 7.48822 8.01022 8.68191 Molecular weight = 257.09amu Principal moments of inertia in cm(-1) A = 0.029080 B = 0.005496 C = 0.005110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.640357 B = 5093.209072 C = 5478.100675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.012 4.012 3 Si 0.996 3.004 4 H -0.274 1.274 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.336 4.336 8 H 0.081 0.919 9 N -0.566 5.566 10 C 0.422 3.578 11 O -0.620 6.620 12 C 0.153 3.847 13 N -0.596 5.596 14 C 0.697 3.303 15 O -0.630 6.630 16 N -0.726 5.726 17 C 0.118 3.882 18 C 0.122 3.878 19 H 0.137 0.863 20 C 0.485 3.515 21 O -0.530 6.530 22 O -0.496 6.496 23 H 0.279 0.721 24 H 0.397 0.603 25 H 0.123 0.877 26 H 0.100 0.900 27 H 0.443 0.557 28 H 0.117 0.883 29 H 0.136 0.864 30 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.114 -16.962 7.741 19.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.212 4.212 3 Si 0.819 3.181 4 H -0.200 1.200 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.465 4.465 8 H 0.099 0.901 9 N -0.202 5.202 10 C 0.208 3.792 11 O -0.507 6.507 12 C 0.026 3.974 13 N -0.333 5.333 14 C 0.398 3.602 15 O -0.511 6.511 16 N -0.389 5.389 17 C -0.006 4.006 18 C 0.016 3.984 19 H 0.154 0.846 20 C 0.325 3.675 21 O -0.419 6.419 22 O -0.309 6.309 23 H 0.089 0.911 24 H 0.231 0.769 25 H 0.141 0.859 26 H 0.118 0.882 27 H 0.288 0.712 28 H 0.135 0.865 29 H 0.153 0.847 30 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges 4.528 -16.382 6.913 18.348 hybrid contribution -0.723 0.561 -0.138 0.926 sum 3.804 -15.820 6.775 17.625 Atomic orbital electron populations 1.69672 1.06930 1.29514 1.49753 1.26104 0.96572 1.02560 0.95959 0.84885 0.77991 0.76609 0.78573 1.19956 1.19252 1.19403 1.19689 0.92772 0.83789 1.50241 0.90108 1.41888 1.09405 1.04660 1.64269 1.21144 0.88641 0.86336 0.83096 1.90470 1.15356 1.87844 1.57001 1.20812 0.89469 0.81736 1.05351 1.46297 1.48101 1.33390 1.05501 1.16077 0.79842 0.80698 0.83632 1.90915 1.66426 1.66179 1.27544 1.44920 1.48169 1.35917 1.09891 1.22504 1.01486 0.98034 0.78574 1.21719 0.91922 0.94993 0.89793 0.84585 1.23370 0.87247 0.75525 0.81360 1.90768 1.28789 1.50260 1.72042 1.84478 1.50862 1.73212 1.22353 0.91129 0.76901 0.85878 0.88220 0.71202 0.86490 0.84652 0.70340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.27 13.05 21.66 0.28 -49.99 16 2 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 3 Si 1.00 43.32 29.55 68.60 2.03 45.34 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.34 -19.39 9.68 84.04 0.81 -18.57 16 8 H 0.08 4.94 7.16 -2.91 -0.02 4.92 16 9 N -0.57 -29.96 5.29 -306.98 -1.62 -31.58 16 10 C 0.42 20.88 7.84 87.66 0.69 21.56 16 11 O -0.62 -34.65 16.02 -3.07 -0.05 -34.70 16 12 C 0.15 5.87 6.20 85.63 0.53 6.40 16 13 N -0.60 -20.71 1.86 -822.92 -1.53 -22.24 16 14 C 0.70 26.10 8.60 179.57 1.54 27.64 16 15 O -0.63 -30.15 17.59 -3.97 -0.07 -30.22 16 16 N -0.73 -17.51 6.37 -477.34 -3.04 -20.55 16 17 C 0.12 1.83 7.69 86.65 0.67 2.50 16 18 C 0.12 2.84 3.96 44.51 0.18 3.02 16 19 H 0.14 3.04 8.14 -2.39 -0.02 3.02 16 20 C 0.48 10.06 6.92 71.24 0.49 10.55 16 21 O -0.53 -14.74 17.35 21.98 0.38 -14.36 16 22 O -0.50 -6.38 13.42 -51.34 -0.69 -7.07 16 23 H 0.28 14.25 8.31 -92.72 -0.77 13.48 16 24 H 0.40 20.05 7.90 -92.71 -0.73 19.32 16 25 H 0.12 3.93 7.83 -2.39 -0.02 3.91 16 26 H 0.10 3.91 8.01 -2.39 -0.02 3.89 16 27 H 0.44 8.34 8.96 -92.71 -0.83 7.51 16 28 H 0.12 1.12 7.73 -2.39 -0.02 1.10 16 29 H 0.14 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.43 1.87 9.10 -74.06 -0.67 1.20 16 Total: -1.00 -85.06 279.53 0.06 -85.00 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: -1.00 Total: 27.44 kcal Atomic # 6 Polarization: 47.55 SS G_CDS: 5.38 Total: 52.93 kcal Atomic # 7 Polarization: -118.45 SS G_CDS: -5.92 Total: -124.37 kcal Atomic # 8 Polarization: -85.92 SS G_CDS: -0.43 Total: -86.35 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Total: -85.06 0.06 -85.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690662876.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.292 kcal (2) G-P(sol) polarization free energy of solvation -85.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds