Wall clock time and date at job start Mon Mar 30 2020 04:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.46875 * 2 1 4 4 C 1.53003 * 109.47171 * 240.00002 * 2 1 3 5 5 C 1.50697 * 109.47121 * 175.00018 * 4 2 1 6 6 H 1.08007 * 119.99961 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00291 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99604 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00386 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47034 * 89.99764 * 9 7 5 11 11 H 1.48498 * 109.47311 * 209.99877 * 9 7 5 12 12 H 1.48496 * 109.47157 * 330.00210 * 9 7 5 13 13 N 1.46503 * 109.46973 * 119.99849 * 2 1 3 14 14 C 1.34955 * 120.01190 * 60.25046 * 13 2 1 15 15 N 1.30492 * 121.61747 * 180.26675 * 14 13 2 16 16 C 1.33690 * 121.55482 * 359.74332 * 15 14 13 17 17 Cl 1.73602 * 120.08810 * 179.97438 * 16 15 14 18 18 C 1.36802 * 119.82538 * 359.97438 * 16 15 14 19 19 N 1.40256 * 120.75336 * 180.02562 * 18 16 15 20 20 C 1.35021 * 120.00801 * 239.99961 * 13 2 1 21 21 O 1.22023 * 120.73714 * 0.02562 * 20 13 2 22 22 H 1.09009 * 109.47283 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47367 * 300.00124 * 1 2 3 24 24 H 1.09002 * 109.47648 * 60.00426 * 1 2 3 25 25 H 1.09004 * 109.46772 * 295.00075 * 4 2 1 26 26 H 1.09000 * 109.47008 * 54.99872 * 4 2 1 27 27 H 0.97002 * 120.00239 * 179.97438 * 8 7 5 28 28 H 1.07999 * 119.19079 * 0.02562 * 14 13 2 29 29 H 0.97007 * 119.99478 * 179.97438 * 19 18 16 30 30 H 0.96990 * 120.00285 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5418 -0.6149 -1.3127 6 1 4.0789 -0.0861 -0.5391 7 6 4.2304 -1.1935 -2.3577 8 7 3.5765 -1.8386 -3.2989 9 14 6.0921 -1.0623 -2.4360 10 1 6.7000 -2.2150 -1.7238 11 1 6.5297 -1.0706 -3.8551 12 1 6.5268 0.2028 -1.7914 13 7 2.0182 -0.6906 1.1962 14 6 1.6965 -1.9841 1.4075 15 7 2.1099 -2.6280 2.4645 16 6 2.8769 -2.0386 3.3873 17 17 3.4049 -2.9312 4.7795 18 6 3.2445 -0.7301 3.2317 19 7 4.0491 -0.0926 4.1875 20 6 2.7945 -0.0346 2.0851 21 8 3.0972 1.1338 1.9057 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.7516 -1.7715 -1.2056 26 1 1.6053 -0.2617 -2.1370 27 1 4.0608 -2.2454 -4.0343 28 1 1.0786 -2.4978 0.6860 29 1 4.3035 0.8356 4.0659 30 1 4.3510 -0.5797 4.9699 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695819548.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:55 Heat of formation + Delta-G solvation = -29.511109 kcal Electronic energy + Delta-G solvation = -17332.763901 eV Core-core repulsion = 14381.197818 eV Total energy + Delta-G solvation = -2951.566083 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.067 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.86809 -38.78961 -38.44280 -37.21963 -35.55221 -34.64148 -32.53430 -30.04575 -29.36906 -26.08810 -25.13680 -24.66988 -21.94369 -20.21984 -18.71097 -18.54392 -17.94654 -17.25051 -16.97826 -16.67347 -16.42845 -15.43215 -14.96857 -14.82642 -14.57245 -14.28742 -13.76719 -13.48506 -13.35518 -12.98462 -12.68366 -12.48567 -12.40213 -12.23071 -12.14645 -11.61464 -11.42335 -11.29607 -11.05543 -10.59527 -10.51286 -8.36899 -8.25224 -6.31868 -0.31108 0.71779 0.75162 1.31246 1.34103 1.43264 1.52758 2.35326 2.53326 2.70437 3.09606 3.17533 3.80973 3.90090 4.05762 4.12232 4.27573 4.51605 4.91704 4.92846 5.22281 5.25081 5.30812 5.52594 5.66192 5.75897 6.14295 6.17410 6.64976 6.73623 6.79267 6.81908 7.36234 8.84719 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.019628 B = 0.007734 C = 0.006853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.211825 B = 3619.553360 C = 4084.955782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.120 3.880 3 H 0.082 0.918 4 C 0.021 3.979 5 C -0.535 4.535 6 H 0.034 0.966 7 C 0.021 3.979 8 N -0.914 5.914 9 Si 0.937 3.063 10 H -0.277 1.277 11 H -0.274 1.274 12 H -0.280 1.280 13 N -0.481 5.481 14 C 0.354 3.646 15 N -0.515 5.515 16 C 0.096 3.904 17 Cl -0.016 7.016 18 C 0.062 3.938 19 N -0.837 5.837 20 C 0.507 3.493 21 O -0.570 6.570 22 H 0.083 0.917 23 H 0.063 0.937 24 H 0.088 0.912 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.265 0.735 28 H 0.233 0.767 29 H 0.409 0.591 30 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.992 -0.654 12.543 13.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.019 3.981 3 H 0.100 0.900 4 C -0.016 4.016 5 C -0.573 4.573 6 H 0.052 0.948 7 C -0.179 4.179 8 N -0.554 5.554 9 Si 0.763 3.237 10 H -0.203 1.203 11 H -0.199 1.199 12 H -0.205 1.205 13 N -0.197 5.197 14 C 0.069 3.931 15 N -0.238 5.238 16 C -0.059 4.059 17 Cl 0.013 6.987 18 C -0.051 4.051 19 N -0.381 5.381 20 C 0.304 3.696 21 O -0.452 6.452 22 H 0.102 0.898 23 H 0.082 0.918 24 H 0.107 0.893 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.074 0.926 28 H 0.248 0.752 29 H 0.240 0.760 30 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -4.867 -0.849 12.613 13.546 hybrid contribution 1.848 0.889 -0.057 2.052 sum -3.018 0.040 12.556 12.914 Atomic orbital electron populations 1.22152 0.90601 1.04371 1.03594 1.21893 0.96133 0.97435 0.82678 0.89965 1.19432 0.94414 0.96093 0.91669 1.21364 0.93852 1.34191 1.07885 0.94759 1.25532 1.01794 0.95060 0.95506 1.69980 1.36818 1.36201 1.12409 0.85876 0.81978 0.78203 0.77619 1.20285 1.19927 1.20506 1.46483 1.39777 1.12284 1.21173 1.24864 0.93948 0.80845 0.93436 1.67581 1.17347 1.35399 1.03473 1.20750 1.02816 0.88336 0.93972 1.98338 1.88009 1.75672 1.36715 1.18923 1.00552 0.92070 0.93579 1.42033 1.56148 1.16018 1.23926 1.16854 0.81170 0.87539 0.84070 1.90898 1.59563 1.16831 1.77908 0.89802 0.91785 0.89290 0.95285 0.95238 0.92568 0.75157 0.76036 0.75366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.83 9.16 71.98 0.66 -3.17 16 2 C 0.12 4.40 2.58 44.99 0.12 4.52 16 3 H 0.08 3.43 6.94 -2.39 -0.02 3.41 16 4 C 0.02 0.95 4.37 29.85 0.13 1.08 16 5 C -0.53 -28.87 8.84 25.60 0.23 -28.64 16 6 H 0.03 1.97 7.74 -2.91 -0.02 1.94 16 7 C 0.02 1.14 5.46 84.65 0.46 1.61 16 8 N -0.91 -51.51 13.29 21.45 0.28 -51.23 16 9 Si 0.94 44.53 29.54 68.60 2.03 46.56 16 10 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 11 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 12 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 13 N -0.48 -17.41 2.24 -631.88 -1.41 -18.82 16 14 C 0.35 11.25 10.20 180.29 1.84 13.09 16 15 N -0.52 -16.84 10.38 -190.13 -1.97 -18.82 16 16 C 0.10 3.08 7.29 84.07 0.61 3.70 16 17 Cl -0.02 -0.41 27.79 -2.72 -0.08 -0.48 16 18 C 0.06 2.10 6.81 38.25 0.26 2.36 16 19 N -0.84 -22.64 9.06 -50.67 -0.46 -23.10 16 20 C 0.51 19.96 7.47 85.00 0.63 20.60 16 21 O -0.57 -25.44 15.93 -5.39 -0.09 -25.53 16 22 H 0.08 1.78 7.24 -2.38 -0.02 1.76 16 23 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 25 H 0.03 1.29 7.05 -2.38 -0.02 1.27 16 26 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 28 H 0.23 5.81 6.74 -2.91 -0.02 5.79 16 29 H 0.41 10.84 8.37 -92.70 -0.78 10.07 16 30 H 0.41 9.00 7.54 -92.72 -0.70 8.30 16 Total: -1.00 -65.15 276.08 2.97 -62.18 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -0.28 Total: 14.11 kcal Atomic # 6 Polarization: 10.20 SS G_CDS: 4.94 Total: 15.14 kcal Atomic # 7 Polarization: -108.41 SS G_CDS: -3.56 Total: -111.97 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.09 Total: -25.53 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -0.08 Total: -0.48 kcal Total: -65.15 2.97 -62.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695819548.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.666 kcal (2) G-P(sol) polarization free energy of solvation -65.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds