Wall clock time and date at job start Mon Mar 30 2020 05:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86807 * 119.99841 * 2 1 4 4 H 1.48497 * 109.47070 * 270.00107 * 3 2 1 5 5 H 1.48499 * 109.47011 * 30.00154 * 3 2 1 6 6 H 1.48500 * 109.47005 * 150.00339 * 3 2 1 7 7 C 1.38947 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00077 * 359.97438 * 7 2 1 9 9 N 1.37103 * 119.99871 * 180.02562 * 7 2 1 10 10 C 1.34776 * 119.99720 * 180.02562 * 9 7 2 11 11 O 1.21286 * 120.00276 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99724 * 179.97438 * 10 9 7 13 13 S 1.80997 * 109.47357 * 179.97438 * 12 10 9 14 14 C 1.76196 * 100.00376 * 179.97438 * 13 12 10 15 15 N 1.29666 * 119.84458 * 0.02692 * 14 13 12 16 16 C 1.47508 * 119.86679 * 175.56031 * 15 14 13 17 17 C 1.52436 * 109.77796 * 70.99351 * 16 15 14 18 18 C 1.52703 * 110.82373 * 274.53002 * 17 16 15 19 19 C 1.51454 * 112.35683 * 66.92885 * 18 17 16 20 20 N 1.37481 * 119.85007 * 179.97438 * 14 13 12 21 21 H 0.97005 * 120.00211 * 359.97438 * 1 2 3 22 22 H 0.97003 * 119.99785 * 359.97438 * 9 7 2 23 23 H 1.09005 * 109.47238 * 59.99476 * 12 10 9 24 24 H 1.09005 * 109.47312 * 299.99953 * 12 10 9 25 25 H 1.09000 * 109.42086 * 310.90149 * 16 15 14 26 26 H 1.08997 * 109.41925 * 191.09021 * 16 15 14 27 27 H 1.09000 * 109.20651 * 34.87859 * 17 16 15 28 28 H 1.08998 * 109.20197 * 154.22976 * 17 16 15 29 29 H 1.09002 * 108.90040 * 187.66831 * 18 17 16 30 30 H 1.09000 * 108.90430 * 306.18326 * 18 17 16 31 31 H 1.09000 * 109.37619 * 57.95061 * 19 18 17 32 32 H 1.09000 * 109.37650 * 177.72190 * 19 18 17 33 33 H 0.97001 * 120.90505 * 291.04759 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6527 0.7001 6 1 3.5457 1.4402 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0537 -2.3705 -0.0011 11 8 3.4473 -3.4209 -0.0020 12 6 5.5607 -2.3705 -0.0011 13 16 6.1641 -4.0769 -0.0018 14 6 7.9021 -3.7870 -0.0025 15 7 8.3535 -2.5714 -0.0018 16 6 9.8048 -2.3269 0.0967 17 6 10.4865 -2.7374 -1.2035 18 6 10.8161 -4.2284 -1.1963 19 6 9.5730 -5.0933 -1.2136 20 7 8.7733 -4.8505 -0.0026 21 1 -0.4851 0.8401 0.0004 22 1 3.8648 -0.3632 0.0004 23 1 5.9241 -1.8573 0.8894 24 1 5.9241 -1.8558 -0.8906 25 1 10.2155 -2.9100 0.9210 26 1 9.9822 -1.2671 0.2800 27 1 9.8225 -2.5209 -2.0403 28 1 11.4083 -2.1676 -1.3204 29 1 11.4202 -4.4607 -2.0734 30 1 11.3938 -4.4581 -0.3010 31 1 8.9776 -4.8533 -2.0945 32 1 9.8634 -6.1433 -1.2485 33 1 8.8580 -5.4252 0.7742 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697686444.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:36 Heat of formation + Delta-G solvation = -32.796035 kcal Electronic energy + Delta-G solvation = -16577.553849 eV Core-core repulsion = 13763.722121 eV Total energy + Delta-G solvation = -2813.831727 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.094 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.27675 -39.86669 -36.11686 -34.53047 -34.30572 -33.83832 -31.07991 -28.12486 -26.52864 -26.04466 -21.96881 -21.49813 -21.08039 -20.42900 -18.89134 -17.76736 -17.38609 -16.82962 -16.52257 -16.29097 -15.64963 -15.32086 -14.90504 -14.65167 -14.59733 -14.22841 -14.01404 -13.89606 -13.40053 -12.99866 -12.94097 -12.45080 -12.00366 -11.99181 -11.71124 -11.57664 -11.38961 -11.27354 -10.70779 -10.47376 -10.31590 -9.35369 -8.75957 -8.44870 -6.06888 0.36591 0.91750 1.23636 1.30638 1.33679 1.43786 1.80567 2.20684 2.78803 2.81987 3.10499 3.75800 3.98800 4.04941 4.15639 4.19190 4.30504 4.42230 4.48393 4.61097 4.64400 4.89791 5.00951 5.09037 5.16153 5.33470 5.48135 5.88313 5.92040 6.49160 6.78011 6.78770 6.85306 7.28636 7.80565 8.71996 Molecular weight = 257.09amu Principal moments of inertia in cm(-1) A = 0.036763 B = 0.004592 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.460905 B = 6095.676667 C = 6703.153241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.007 4.007 3 Si 0.960 3.040 4 H -0.255 1.255 5 H -0.271 1.271 6 H -0.234 1.234 7 C -0.333 4.333 8 H 0.061 0.939 9 N -0.577 5.577 10 C 0.461 3.539 11 O -0.608 6.608 12 C -0.101 4.101 13 S -0.042 6.042 14 C 0.380 3.620 15 N -0.569 5.569 16 C 0.053 3.947 17 C -0.126 4.126 18 C -0.139 4.139 19 C 0.132 3.868 20 N -0.779 5.779 21 H 0.282 0.718 22 H 0.391 0.609 23 H 0.125 0.875 24 H 0.125 0.875 25 H 0.060 0.940 26 H 0.082 0.918 27 H 0.048 0.952 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.051 0.949 32 H 0.103 0.897 33 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.003 -3.670 -1.340 26.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.207 4.207 3 Si 0.780 3.220 4 H -0.180 1.180 5 H -0.196 1.196 6 H -0.158 1.158 7 C -0.462 4.462 8 H 0.079 0.921 9 N -0.218 5.218 10 C 0.247 3.753 11 O -0.494 6.494 12 C -0.253 4.253 13 S 0.187 5.813 14 C -0.009 4.009 15 N -0.294 5.294 16 C -0.079 4.079 17 C -0.164 4.164 18 C -0.178 4.178 19 C 0.007 3.993 20 N -0.432 5.432 21 H 0.091 0.909 22 H 0.227 0.773 23 H 0.143 0.857 24 H 0.143 0.857 25 H 0.078 0.922 26 H 0.100 0.900 27 H 0.067 0.933 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.121 0.879 33 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 24.571 -4.273 -1.530 24.987 hybrid contribution 0.852 1.290 0.335 1.582 sum 25.423 -2.983 -1.194 25.625 Atomic orbital electron populations 1.69784 1.08032 1.29463 1.49383 1.26061 0.96430 1.02540 0.95672 0.85430 0.79502 0.76962 0.80118 1.17978 1.19592 1.15772 1.19050 0.80954 0.95305 1.50863 0.92075 1.41896 1.06044 1.07195 1.66642 1.19956 0.89039 0.83926 0.82371 1.90577 1.70771 1.32255 1.55799 1.23290 0.93746 0.99201 1.09081 1.86741 0.94805 1.08643 1.91100 1.24178 0.94689 0.87420 0.94573 1.73204 1.17339 1.19818 1.19006 1.22233 0.86131 1.01500 0.98082 1.21604 1.00836 0.97489 0.96496 1.21761 0.98278 0.94161 1.03616 1.21221 0.91235 1.00688 0.86198 1.44757 1.44444 1.34845 1.19104 0.90884 0.77263 0.85691 0.85675 0.92170 0.89994 0.93310 0.89603 0.89372 0.91011 0.93000 0.87867 0.75214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.60 13.96 21.66 0.30 -55.30 16 2 C -0.01 -0.40 5.50 84.93 0.47 0.07 16 3 Si 0.96 39.03 27.74 68.60 1.90 40.93 16 4 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 5 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 6 H -0.23 -8.20 6.52 99.48 0.65 -7.56 16 7 C -0.33 -19.62 10.16 84.04 0.85 -18.76 16 8 H 0.06 4.26 7.39 -2.91 -0.02 4.24 16 9 N -0.58 -27.99 5.09 -306.99 -1.56 -29.55 16 10 C 0.46 21.68 7.80 87.66 0.68 22.36 16 11 O -0.61 -34.32 15.44 -3.05 -0.05 -34.37 16 12 C -0.10 -3.51 5.32 71.24 0.38 -3.13 16 13 S -0.04 -1.38 21.41 -56.49 -1.21 -2.59 16 14 C 0.38 9.75 7.14 179.71 1.28 11.03 16 15 N -0.57 -14.74 9.46 -346.12 -3.27 -18.01 16 16 C 0.05 1.06 6.38 86.00 0.55 1.61 16 17 C -0.13 -1.99 5.74 30.31 0.17 -1.82 16 18 C -0.14 -1.67 5.63 29.99 0.17 -1.50 16 19 C 0.13 1.90 6.57 85.75 0.56 2.46 16 20 N -0.78 -14.62 4.98 -348.63 -1.74 -16.35 16 21 H 0.28 15.37 8.31 -92.70 -0.77 14.60 16 22 H 0.39 15.92 5.76 -92.71 -0.53 15.39 16 23 H 0.12 3.89 8.13 -2.39 -0.02 3.87 16 24 H 0.13 3.90 8.13 -2.39 -0.02 3.88 16 25 H 0.06 1.14 7.70 -2.39 -0.02 1.12 16 26 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.05 0.95 8.08 -2.39 -0.02 0.93 16 28 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.78 8.01 -2.39 -0.02 0.76 16 31 H 0.05 0.91 8.05 -2.39 -0.02 0.90 16 32 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.41 6.42 8.96 -92.71 -0.83 5.59 16 Total: -1.00 -73.39 290.13 -0.79 -74.18 By element: Atomic # 1 Polarization: 29.02 SS G_CDS: -0.29 Total: 28.74 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: 5.12 Total: 12.32 kcal Atomic # 7 Polarization: -112.94 SS G_CDS: -6.27 Total: -119.21 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -0.05 Total: -34.37 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 1.90 Total: 40.93 kcal Atomic # 16 Polarization: -1.38 SS G_CDS: -1.21 Total: -2.59 kcal Total: -73.39 -0.79 -74.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697686444.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.384 kcal (2) G-P(sol) polarization free energy of solvation -73.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds