Wall clock time and date at job start Mon Mar 30 2020 04:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00253 * 2 1 4 4 H 1.48506 * 109.47294 * 270.00140 * 3 2 1 5 5 H 1.48498 * 109.47179 * 30.00018 * 3 2 1 6 6 H 1.48499 * 109.47254 * 150.00152 * 3 2 1 7 7 C 1.37879 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99482 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00112 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.47038 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47094 * 179.97438 * 10 9 7 12 12 S 1.65597 * 119.99926 * 165.27799 * 11 10 9 13 13 O 1.42096 * 106.40195 * 178.26439 * 12 11 10 14 14 O 1.42108 * 106.40105 * 311.18495 * 12 11 10 15 15 C 1.76199 * 107.22117 * 64.72196 * 12 11 10 16 16 C 1.38612 * 120.07948 * 269.72921 * 15 12 11 17 17 C 1.38885 * 117.97004 * 179.73695 * 16 15 12 18 18 C 1.38609 * 117.96607 * 0.52342 * 17 16 15 19 19 N 1.31931 * 119.84930 * 359.72847 * 18 17 16 20 20 N 1.28353 * 122.18222 * 0.02562 * 19 18 17 21 21 H 0.97005 * 120.00004 * 0.02562 * 1 2 3 22 22 H 1.08994 * 109.47449 * 59.99680 * 9 7 2 23 23 H 1.09002 * 109.46981 * 299.98904 * 9 7 2 24 24 H 1.09007 * 109.47007 * 59.99663 * 10 9 7 25 25 H 1.08995 * 109.47080 * 299.99907 * 10 9 7 26 26 H 0.97001 * 119.99790 * 344.99588 * 11 10 9 27 27 H 1.08005 * 121.01222 * 359.97438 * 16 15 12 28 28 H 1.07996 * 121.01720 * 180.22846 * 17 16 15 29 29 H 1.07998 * 120.07463 * 179.75382 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0001 11 7 5.4865 -2.6366 -0.0001 12 16 6.3144 -4.0237 0.3642 13 8 7.6950 -3.7114 0.2394 14 8 5.7376 -4.5333 1.5588 15 6 5.9528 -5.1948 -0.9016 16 6 4.8743 -6.0547 -0.7650 17 6 4.6260 -6.9565 -1.7917 18 6 5.4787 -6.9482 -2.8844 19 7 6.4848 -6.0958 -2.9258 20 7 6.7114 -5.2592 -1.9791 21 1 -0.4850 0.8401 -0.0004 22 1 3.8745 -0.6808 0.8904 23 1 3.8752 -0.6798 -0.8896 24 1 3.6584 -3.1503 -0.8903 25 1 3.6578 -3.1506 0.8896 26 1 5.9714 -1.8252 -0.2176 27 1 4.2439 -6.0218 0.1114 28 1 3.7968 -7.6463 -1.7381 29 1 5.3195 -7.6377 -3.7003 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712791066.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:04 Heat of formation + Delta-G solvation = -46.983795 kcal Electronic energy + Delta-G solvation = -16675.028837 eV Core-core repulsion = 13724.748787 eV Total energy + Delta-G solvation = -2950.280049 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.062 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.12269 -38.52357 -37.16819 -37.13332 -34.73077 -34.42189 -33.90217 -31.55247 -26.45183 -26.22056 -25.87735 -22.74515 -21.05252 -19.62681 -18.89177 -18.74305 -18.46754 -17.75810 -17.00882 -16.29605 -16.16513 -15.80863 -15.62575 -15.36998 -14.63470 -14.37658 -13.68727 -13.54318 -13.46260 -13.40496 -13.30674 -13.14907 -12.31090 -11.95633 -11.81481 -11.78633 -11.70889 -11.44108 -11.42432 -11.10115 -10.77154 -10.48941 -8.27846 -6.32573 -0.96123 -0.67232 -0.40204 1.39625 1.42347 1.52449 1.73713 2.15405 2.37922 2.53150 2.71922 3.08489 3.35805 3.48552 3.59942 3.75005 3.91524 4.08571 4.44033 4.53261 4.61265 4.67408 4.84156 5.01295 5.35355 5.44302 5.61824 5.98753 6.26123 6.75213 7.25304 7.32198 8.87832 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.026426 B = 0.005728 C = 0.005217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.297806 B = 4887.227978 C = 5365.746088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.009 3.991 3 Si 0.944 3.056 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.243 1.243 7 C -0.531 4.531 8 H 0.046 0.954 9 C -0.020 4.020 10 C 0.132 3.868 11 N -1.103 6.103 12 S 2.730 3.270 13 O -0.966 6.966 14 O -0.959 6.959 15 C -0.516 4.516 16 C -0.056 4.056 17 C -0.109 4.109 18 C 0.083 3.917 19 N -0.288 5.288 20 N -0.177 5.177 21 H 0.266 0.734 22 H 0.033 0.967 23 H 0.032 0.968 24 H 0.065 0.935 25 H 0.080 0.920 26 H 0.428 0.572 27 H 0.187 0.813 28 H 0.211 0.789 29 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.556 -13.553 -3.658 16.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.189 4.189 3 Si 0.768 3.232 4 H -0.194 1.194 5 H -0.214 1.214 6 H -0.166 1.166 7 C -0.570 4.570 8 H 0.064 0.936 9 C -0.059 4.059 10 C 0.006 3.994 11 N -0.867 5.867 12 S 2.813 3.187 13 O -0.956 6.956 14 O -0.948 6.948 15 C -0.743 4.743 16 C -0.085 4.085 17 C -0.138 4.138 18 C -0.078 4.078 19 N -0.132 5.132 20 N -0.023 5.023 21 H 0.075 0.925 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.084 0.916 25 H 0.099 0.901 26 H 0.265 0.735 27 H 0.205 0.795 28 H 0.228 0.772 29 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 11.156 -13.210 -3.749 17.692 hybrid contribution -1.469 0.378 -0.029 1.517 sum 9.687 -12.832 -3.777 16.516 Atomic orbital electron populations 1.70038 1.08199 1.28162 1.52313 1.25909 0.95540 1.03291 0.94154 0.85753 0.79774 0.78608 0.79104 1.19363 1.21435 1.16621 1.21291 0.91253 0.93690 1.50734 0.93612 1.19714 0.94583 0.93605 0.98018 1.21277 0.76116 1.00157 1.01807 1.55322 1.16505 1.26713 1.88132 1.01111 0.72209 0.72487 0.72880 1.93563 1.31936 1.83438 1.86681 1.93608 1.79255 1.80517 1.41462 1.35100 1.04849 1.18607 1.15789 1.22702 0.93282 0.91279 1.01189 1.23149 1.00706 0.97989 0.91976 1.25411 0.88801 0.94544 0.99086 1.73018 1.18447 1.02885 1.18857 1.73137 1.20273 1.12526 0.96335 0.92488 0.94916 0.95018 0.91628 0.90138 0.73490 0.79533 0.77160 0.75751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.73 13.96 21.45 0.30 -56.43 15 2 C 0.01 0.48 5.47 84.66 0.46 0.94 15 3 Si 0.94 41.95 27.47 68.60 1.88 43.84 15 4 H -0.27 -11.53 7.11 99.48 0.71 -10.82 15 5 H -0.29 -12.82 7.11 99.48 0.71 -12.12 15 6 H -0.24 -9.89 6.54 99.48 0.65 -9.23 15 7 C -0.53 -28.18 9.66 25.60 0.25 -27.93 15 8 H 0.05 2.62 7.99 -2.91 -0.02 2.60 15 9 C -0.02 -0.84 4.18 29.85 0.12 -0.72 15 10 C 0.13 4.46 6.16 86.38 0.53 4.99 15 11 N -1.10 -31.93 6.00 -187.48 -1.12 -33.06 15 12 S 2.73 79.24 5.81 -56.49 -0.33 78.91 15 13 O -0.97 -32.91 17.87 -128.00 -2.29 -35.20 15 14 O -0.96 -30.33 16.81 -128.00 -2.15 -32.48 15 15 C -0.52 -13.88 6.91 84.77 0.59 -13.29 15 16 C -0.06 -1.11 9.66 22.51 0.22 -0.89 15 17 C -0.11 -1.43 10.21 22.51 0.23 -1.20 15 18 C 0.08 1.28 11.31 84.77 0.96 2.24 15 19 N -0.29 -7.45 11.50 -57.26 -0.66 -8.11 15 20 N -0.18 -5.37 11.28 -55.21 -0.62 -5.99 15 21 H 0.27 14.97 8.31 -92.70 -0.77 14.20 15 22 H 0.03 1.35 7.20 -2.39 -0.02 1.33 15 23 H 0.03 1.27 7.57 -2.39 -0.02 1.25 15 24 H 0.07 2.08 8.14 -2.38 -0.02 2.06 15 25 H 0.08 2.69 7.76 -2.39 -0.02 2.67 15 26 H 0.43 11.07 8.65 -96.74 -0.84 10.23 15 27 H 0.19 2.99 7.69 -2.91 -0.02 2.97 15 28 H 0.21 0.68 8.06 -2.91 -0.02 0.66 15 29 H 0.23 1.18 8.06 -2.91 -0.02 1.16 15 Total: -1.00 -76.11 274.46 -1.34 -77.45 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: 0.29 Total: 6.96 kcal Atomic # 6 Polarization: -39.23 SS G_CDS: 3.36 Total: -35.87 kcal Atomic # 7 Polarization: -101.49 SS G_CDS: -2.11 Total: -103.59 kcal Atomic # 8 Polarization: -63.25 SS G_CDS: -4.44 Total: -67.68 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 1.88 Total: 43.84 kcal Atomic # 16 Polarization: 79.24 SS G_CDS: -0.33 Total: 78.91 kcal Total: -76.11 -1.34 -77.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712791066.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.466 kcal (2) G-P(sol) polarization free energy of solvation -76.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds