Wall clock time and date at job start Mon Mar 30 2020 04:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86802 * 120.00000 * 2 1 4 4 H 1.48498 * 109.46820 * 269.99552 * 3 2 1 5 5 H 1.48499 * 109.47090 * 29.99382 * 3 2 1 6 6 H 1.48497 * 109.47031 * 149.99689 * 3 2 1 7 7 C 1.38796 * 119.99852 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99487 * 180.02562 * 7 2 1 9 9 S 1.76191 * 120.00164 * 0.02562 * 7 2 1 10 10 C 1.81005 * 100.00331 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47417 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99635 * 359.97438 * 11 10 9 13 13 N 1.34770 * 119.99815 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99649 * 179.97438 * 13 11 10 15 15 H 1.08994 * 109.49689 * 34.96839 * 14 13 11 16 16 C 1.52965 * 109.48044 * 155.00080 * 14 13 11 17 17 C 1.52957 * 109.75768 * 183.54212 * 16 14 13 18 18 C 1.53223 * 109.40888 * 296.43474 * 17 16 14 19 19 C 1.51272 * 108.53406 * 54.62894 * 18 17 16 20 20 O 1.20764 * 120.85223 * 128.63437 * 19 18 17 21 21 C 1.51273 * 118.29866 * 308.65151 * 19 18 17 22 22 H 0.97006 * 119.99784 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47135 * 59.99583 * 10 9 7 24 24 H 1.09002 * 109.46825 * 300.00268 * 10 9 7 25 25 H 0.96994 * 120.00700 * 359.97438 * 13 11 10 26 26 H 1.09002 * 109.41499 * 63.47086 * 16 14 13 27 27 H 1.09004 * 109.40969 * 303.61232 * 16 14 13 28 28 H 1.09005 * 109.48472 * 56.42044 * 17 16 14 29 29 H 1.09002 * 109.48310 * 176.44217 * 17 16 14 30 30 H 1.09000 * 109.63126 * 174.34485 * 18 17 16 31 31 H 1.09004 * 109.62858 * 294.72524 * 18 17 16 32 32 H 1.09007 * 109.62232 * 171.06504 * 21 19 18 33 33 H 1.08995 * 109.62606 * 291.63123 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9873 -5.3027 -0.0001 12 8 0.7910 -5.5022 0.0000 13 7 2.8441 -6.3430 -0.0007 14 6 2.3303 -7.7150 -0.0008 15 1 1.4140 -7.7603 -0.5892 16 6 3.3751 -8.6510 -0.6109 17 6 2.8114 -10.0704 -0.6951 18 6 2.5343 -10.5929 0.7184 19 6 1.6341 -9.6058 1.4281 20 8 0.6204 -9.9725 1.9725 21 6 2.0359 -8.1474 1.4380 22 1 -0.4850 0.8401 -0.0004 23 1 3.1245 -3.7314 0.8905 24 1 3.1244 -3.7313 -0.8895 25 1 3.8008 -6.1835 -0.0012 26 1 4.2687 -8.6525 0.0132 27 1 3.6325 -8.3034 -1.6115 28 1 1.8836 -10.0598 -1.2671 29 1 3.5347 -10.7202 -1.1877 30 1 2.0402 -11.5627 0.6601 31 1 3.4736 -10.6928 1.2625 32 1 1.2214 -7.5460 1.8419 33 1 2.9286 -8.0178 2.0497 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715724518.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:01 Heat of formation + Delta-G solvation = -93.088775 kcal Electronic energy + Delta-G solvation = -16466.603887 eV Core-core repulsion = 13617.864919 eV Total energy + Delta-G solvation = -2848.738968 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.087 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.34745 -39.02835 -36.75602 -33.82389 -32.44027 -30.82359 -29.27467 -28.26363 -25.49902 -23.30945 -21.94153 -20.38911 -19.40300 -17.86009 -16.71105 -16.36938 -15.78719 -15.42926 -15.16299 -14.81568 -14.62723 -14.43245 -13.97430 -13.74424 -13.17357 -13.03449 -12.59049 -12.39097 -12.38045 -11.81081 -11.43502 -11.16585 -11.07340 -11.03833 -10.98811 -10.77186 -9.87275 -9.80999 -9.36875 -9.08870 -9.00574 -8.25155 -6.51621 -6.22719 -3.93649 1.74093 2.96381 3.03036 3.21585 3.26404 3.30213 3.61683 3.91695 4.19185 4.33800 4.49532 4.52438 4.71794 4.95056 5.04278 5.09285 5.12535 5.17721 5.24618 5.43438 5.49088 5.56586 5.68506 5.74190 5.85453 5.94102 6.00980 6.10856 6.53763 7.29300 7.58191 7.63795 8.33878 8.55306 9.22550 10.84687 Molecular weight = 257.09amu Principal moments of inertia in cm(-1) A = 0.053026 B = 0.003787 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.915914 B = 7392.671032 C = 7667.458489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.532 3.468 12 O -0.514 6.514 13 N -0.735 5.735 14 C 0.154 3.846 15 H 0.093 0.907 16 C -0.133 4.133 17 C -0.110 4.110 18 C -0.171 4.171 19 C 0.364 3.636 20 O -0.454 6.454 21 C -0.184 4.184 22 H 0.269 0.731 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.400 0.600 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.348 -18.488 -0.828 21.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.387 6.387 13 N -0.389 5.389 14 C 0.049 3.951 15 H 0.111 0.889 16 C -0.171 4.171 17 C -0.148 4.148 18 C -0.209 4.209 19 C 0.239 3.761 20 O -0.326 6.326 21 C -0.223 4.223 22 H 0.078 0.922 23 H 0.108 0.892 24 H 0.108 0.892 25 H 0.234 0.766 26 H 0.093 0.907 27 H 0.098 0.902 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 8.616 -18.892 -0.540 20.771 hybrid contribution 2.556 1.435 0.041 2.932 sum 11.173 -17.457 -0.500 20.732 Atomic orbital electron populations 1.70020 1.05966 1.27485 1.46773 1.24993 0.95023 0.99040 0.94507 0.86164 0.79405 0.81559 0.78350 1.20262 1.20745 1.19690 1.22864 0.94902 0.91655 1.59061 0.90917 1.85434 1.04842 0.96344 1.96724 1.23535 1.06635 0.95277 1.04972 1.20383 0.86591 0.86359 0.74873 1.90722 1.15350 1.85522 1.47118 1.46062 1.09996 1.04886 1.77936 1.20751 0.98488 0.81602 0.94289 0.88935 1.21890 0.98391 0.94467 1.02308 1.21436 1.02276 0.95835 0.95259 1.22350 1.01443 0.99517 0.97571 1.24815 0.84395 0.91681 0.75251 1.90430 1.24230 1.82042 1.35933 1.22774 1.04891 0.95099 0.99570 0.92157 0.89161 0.89155 0.76620 0.90692 0.90168 0.90968 0.90110 0.89253 0.88275 0.88420 0.88161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.11 13.22 55.49 0.73 -25.38 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.54 -15.17 9.50 30.94 0.29 -14.88 16 8 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -2.99 6.16 36.00 0.22 -2.77 16 11 C 0.53 9.49 7.81 -10.99 -0.09 9.41 16 12 O -0.51 -11.43 15.53 5.55 0.09 -11.34 16 13 N -0.73 -8.83 5.07 -53.78 -0.27 -9.10 16 14 C 0.15 1.64 2.46 -67.90 -0.17 1.47 16 15 H 0.09 1.22 7.58 -51.93 -0.39 0.82 16 16 C -0.13 -0.86 5.28 -26.77 -0.14 -1.00 16 17 C -0.11 -0.64 5.94 -26.64 -0.16 -0.80 16 18 C -0.17 -1.16 6.17 -27.49 -0.17 -1.33 16 19 C 0.36 3.98 6.72 -28.47 -0.19 3.79 16 20 O -0.45 -6.89 17.89 6.00 0.11 -6.78 16 21 C -0.18 -2.02 5.74 -27.56 -0.16 -2.18 16 22 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 23 H 0.09 1.62 8.14 -51.92 -0.42 1.19 16 24 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 25 H 0.40 3.48 8.60 -40.82 -0.35 3.13 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 298.13 15.07 4.49 4.49 Total: -1.00 -35.69 298.13 -7.26 -42.94 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -4.52 Total: -0.94 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -0.65 Total: -6.30 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: 0.46 Total: -34.48 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: 0.19 Total: -18.12 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -35.69 -7.26 -42.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715724518.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.144 kcal (2) G-P(sol) polarization free energy of solvation -35.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds