Wall clock time and date at job start Mon Mar 30 2020 04:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99959 * 2 1 4 4 H 1.48492 * 109.47453 * 270.00540 * 3 2 1 5 5 H 1.48504 * 109.46790 * 30.00783 * 3 2 1 6 6 H 1.48498 * 109.47094 * 150.00237 * 3 2 1 7 7 C 1.37872 * 119.99853 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99822 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00388 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47189 * 180.02562 * 9 7 2 11 11 C 1.34785 * 119.99753 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99773 * 359.97438 * 11 10 9 13 13 C 1.50698 * 119.99881 * 180.02562 * 11 10 9 14 14 S 1.80998 * 109.47119 * 179.97438 * 13 11 10 15 15 C 1.76199 * 100.00013 * 179.97438 * 14 13 11 16 16 N 1.30436 * 120.00047 * 359.97438 * 15 14 13 17 17 N 1.37567 * 120.00283 * 180.02562 * 15 14 13 18 18 C 1.46496 * 120.00397 * 180.02562 * 17 15 14 19 19 C 1.53001 * 117.49981 * 223.74393 * 18 17 15 20 20 C 1.52997 * 117.49931 * 155.08286 * 18 17 15 21 21 H 0.97002 * 119.99938 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.47203 * 60.00243 * 9 7 2 23 23 H 1.09009 * 109.46964 * 300.00561 * 9 7 2 24 24 H 0.96995 * 119.99993 * 359.97438 * 10 9 7 25 25 H 1.08999 * 109.47400 * 59.99260 * 13 11 10 26 26 H 1.09009 * 109.46947 * 299.99466 * 13 11 10 27 27 H 0.97001 * 119.99792 * 179.97438 * 16 15 14 28 28 H 0.96996 * 119.99495 * 359.97438 * 17 15 14 29 29 H 1.09001 * 115.54818 * 9.41229 * 18 17 15 30 30 H 1.09004 * 117.49476 * 359.97438 * 19 18 17 31 31 H 1.08998 * 117.49699 * 145.01399 * 19 18 17 32 32 H 1.08999 * 117.49561 * 214.97429 * 20 18 17 33 33 H 1.08999 * 117.50057 * 359.97388 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7538 -4.8834 -0.0011 12 8 0.5614 -5.1049 -0.0011 13 6 2.7331 -6.0288 -0.0005 14 16 1.8281 -7.5963 -0.0006 15 6 3.1779 -8.7289 -0.0007 16 7 4.4036 -8.2827 -0.0011 17 7 2.9391 -10.0836 -0.0013 18 6 4.0613 -11.0253 -0.0008 19 6 3.9730 -12.2302 -0.9396 20 6 3.8109 -12.4224 0.5703 21 1 -0.4850 0.8401 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6247 -2.5570 0.8897 24 1 3.1567 -3.4353 -0.0009 25 1 3.3592 -5.9711 0.8899 26 1 3.3604 -5.9709 -0.8901 27 1 5.1467 -8.9063 -0.0007 28 1 2.0276 -10.4154 -0.0014 29 1 5.0449 -10.5843 0.1610 30 1 3.0796 -12.3224 -1.5574 31 1 4.8985 -12.5820 -1.3953 32 1 4.6299 -12.9008 1.1074 33 1 2.8113 -12.6408 0.9461 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719138722.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:52 Heat of formation + Delta-G solvation = -12.559019 kcal Electronic energy + Delta-G solvation = -15773.152368 eV Core-core repulsion = 12960.198184 eV Total energy + Delta-G solvation = -2812.954185 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.094 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.51640 -39.55676 -36.31348 -36.17944 -34.39592 -32.18695 -31.17217 -28.71846 -24.99999 -24.57226 -23.30062 -21.85325 -21.42393 -19.57833 -18.67638 -17.94727 -17.53554 -17.18919 -16.69786 -16.47802 -15.91669 -15.49525 -14.88813 -14.82747 -14.38138 -14.24646 -13.99420 -13.44005 -13.39615 -12.89098 -12.70294 -12.46211 -12.22596 -11.83676 -11.71404 -11.48732 -11.47554 -11.03290 -10.80312 -10.71643 -9.90270 -9.26773 -8.93116 -8.28356 -6.44594 0.07514 1.01948 1.27045 1.44837 1.46790 1.58081 1.60052 2.31350 2.43995 2.54135 2.92237 3.06835 3.76201 3.80260 3.90932 4.00447 4.10945 4.41132 4.57028 4.74416 4.74884 4.98949 5.10264 5.17951 5.24681 5.45142 5.62944 5.64443 5.84286 6.48306 6.64810 6.77555 7.15345 7.21883 7.37538 8.83757 Molecular weight = 257.09amu Principal moments of inertia in cm(-1) A = 0.068855 B = 0.003087 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.555269 B = 9066.677138 C = 9384.143436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.984 3.016 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.256 1.256 7 C -0.556 4.556 8 H 0.084 0.916 9 C 0.266 3.734 10 N -0.698 5.698 11 C 0.512 3.488 12 O -0.585 6.585 13 C -0.109 4.109 14 S 0.006 5.994 15 C 0.392 3.608 16 N -0.787 5.787 17 N -0.711 5.711 18 C 0.055 3.945 19 C -0.185 4.185 20 C -0.174 4.174 21 H 0.269 0.731 22 H -0.007 1.007 23 H -0.007 1.007 24 H 0.411 0.589 25 H 0.137 0.863 26 H 0.137 0.863 27 H 0.337 0.663 28 H 0.407 0.593 29 H 0.126 0.874 30 H 0.098 0.902 31 H 0.113 0.887 32 H 0.117 0.883 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.905 -22.606 -0.036 25.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.807 3.193 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.180 1.180 7 C -0.594 4.594 8 H 0.102 0.898 9 C 0.143 3.857 10 N -0.348 5.348 11 C 0.298 3.702 12 O -0.466 6.466 13 C -0.260 4.260 14 S 0.233 5.767 15 C 0.002 3.998 16 N -0.431 5.431 17 N -0.352 5.352 18 C -0.053 4.053 19 C -0.225 4.225 20 C -0.212 4.212 21 H 0.078 0.922 22 H 0.011 0.989 23 H 0.011 0.989 24 H 0.247 0.753 25 H 0.155 0.845 26 H 0.155 0.845 27 H 0.157 0.843 28 H 0.243 0.757 29 H 0.144 0.856 30 H 0.116 0.884 31 H 0.132 0.868 32 H 0.135 0.865 33 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 9.304 -21.870 -0.027 23.767 hybrid contribution 1.380 0.056 -0.030 1.381 sum 10.684 -21.814 -0.057 24.290 Atomic orbital electron populations 1.70133 1.08202 1.28581 1.49937 1.26040 0.95776 1.03824 0.93879 0.85166 0.78490 0.77050 0.78576 1.19633 1.20974 1.17994 1.21612 0.94367 0.90521 1.52922 0.89776 1.18626 0.88589 0.83890 0.94579 1.46082 1.11596 1.04966 1.72125 1.20377 0.88873 0.84621 0.76379 1.90686 1.18521 1.85057 1.52378 1.23427 1.00382 0.91607 1.10591 1.86478 1.02211 0.95701 1.92280 1.24624 0.97426 0.86154 0.91550 1.70346 0.98614 1.41047 1.33055 1.44858 1.09121 1.01943 1.79286 1.21634 0.91548 0.85165 1.06971 1.23531 1.04708 1.00780 0.93441 1.23467 1.04577 0.96755 0.96429 0.92223 0.98935 0.98923 0.75254 0.84483 0.84494 0.84261 0.75671 0.85612 0.88360 0.86843 0.86510 0.87924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.84 13.29 21.45 0.28 -55.56 16 2 C 0.00 0.25 5.46 84.65 0.46 0.71 16 3 Si 0.98 42.23 29.54 68.60 2.03 44.26 16 4 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 7 C -0.56 -30.07 9.28 25.60 0.24 -29.83 16 8 H 0.08 4.11 7.60 -2.91 -0.02 4.09 16 9 C 0.27 14.46 5.43 85.63 0.46 14.92 16 10 N -0.70 -29.29 5.55 -466.77 -2.59 -31.88 16 11 C 0.51 20.45 7.85 87.66 0.69 21.14 16 12 O -0.58 -28.43 15.86 -3.04 -0.05 -28.48 16 13 C -0.11 -3.15 5.33 71.24 0.38 -2.77 16 14 S 0.01 0.17 21.36 -56.49 -1.21 -1.03 16 15 C 0.39 9.10 8.15 179.46 1.46 10.57 16 16 N -0.79 -19.04 12.83 -56.66 -0.73 -19.76 16 17 N -0.71 -12.40 5.68 -326.32 -1.85 -14.25 16 18 C 0.06 0.74 6.39 44.99 0.29 1.03 16 19 C -0.19 -1.84 10.46 30.62 0.32 -1.52 16 20 C -0.17 -1.59 10.46 30.62 0.32 -1.27 16 21 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 22 H -0.01 -0.45 8.14 -2.39 -0.02 -0.46 16 23 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 24 H 0.41 14.27 8.32 -92.71 -0.77 13.49 16 25 H 0.14 3.55 8.13 -2.40 -0.02 3.53 16 26 H 0.14 3.56 8.13 -2.39 -0.02 3.54 16 27 H 0.34 7.10 6.37 -92.71 -0.59 6.51 16 28 H 0.41 6.12 8.88 -92.71 -0.82 5.30 16 29 H 0.13 1.67 6.10 -2.39 -0.01 1.65 16 30 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -69.72 304.91 -0.52 -70.24 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: -1.03 Total: 23.50 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: 4.62 Total: 12.97 kcal Atomic # 7 Polarization: -116.57 SS G_CDS: -4.89 Total: -121.45 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -0.05 Total: -28.48 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Atomic # 16 Polarization: 0.17 SS G_CDS: -1.21 Total: -1.03 kcal Total: -69.72 -0.52 -70.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719138722.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.679 kcal (2) G-P(sol) polarization free energy of solvation -69.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds