Wall clock time and date at job start Mon Mar 30 2020 04:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86795 * 120.00415 * 2 1 4 4 H 1.48507 * 109.47231 * 270.00249 * 3 2 1 5 5 H 1.48499 * 109.47224 * 29.99852 * 3 2 1 6 6 H 1.48500 * 109.47183 * 150.00518 * 3 2 1 7 7 C 1.38953 * 119.99675 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99923 * 179.97438 * 7 2 1 9 9 N 1.37096 * 120.00215 * 359.97438 * 7 2 1 10 10 C 1.34770 * 120.00338 * 180.02562 * 9 7 2 11 11 O 1.21291 * 120.00182 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00346 * 179.97438 * 10 9 7 13 13 O 1.42904 * 109.47716 * 179.97438 * 12 10 9 14 14 C 1.35937 * 117.00143 * 180.02562 * 13 12 10 15 15 C 1.38719 * 120.02486 * 0.02562 * 14 13 12 16 16 C 1.38161 * 120.01873 * 179.97438 * 15 14 13 17 17 C 1.38407 * 120.05269 * 359.97438 * 16 15 14 18 18 F 1.35102 * 119.98113 * 180.27730 * 17 16 15 19 19 C 1.38655 * 120.03978 * 0.02562 * 17 16 15 20 20 F 1.35101 * 120.00729 * 180.02562 * 19 17 16 21 21 C 1.38358 * 119.98545 * 359.97438 * 19 17 16 22 22 H 0.97000 * 119.99737 * 359.97438 * 1 2 3 23 23 H 0.97007 * 119.99536 * 0.02562 * 9 7 2 24 24 H 1.09002 * 109.47129 * 60.00030 * 12 10 9 25 25 H 1.08998 * 109.47697 * 300.00206 * 12 10 9 26 26 H 1.08006 * 119.99352 * 359.97438 * 15 14 13 27 27 H 1.08003 * 119.97930 * 180.02562 * 16 15 14 28 28 H 1.08002 * 120.02540 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4457 2.6526 0.7000 6 1 3.5458 1.4399 0.6999 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9970 -3.5579 -0.0005 11 8 3.2099 -3.5580 -0.0010 12 6 1.2435 -4.8629 0.0000 13 8 2.1720 -5.9492 -0.0007 14 6 1.6523 -7.2053 -0.0008 15 6 0.2772 -7.3876 -0.0008 16 6 -0.2509 -8.6643 -0.0015 17 6 0.5912 -9.7627 -0.0027 18 9 0.0733 -11.0105 -0.0090 19 6 1.9661 -9.5832 -0.0027 20 9 2.7875 -10.6558 -0.0044 21 6 2.4967 -8.3054 -0.0020 22 1 -0.4850 0.8401 0.0004 23 1 0.3532 -2.3906 -0.0005 24 1 0.6165 -4.9209 -0.8897 25 1 0.6172 -4.9205 0.8902 26 1 -0.3810 -6.5312 -0.0003 27 1 -1.3217 -8.8054 -0.0019 28 1 3.5675 -8.1649 -0.0016 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731158079.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:04 Heat of formation + Delta-G solvation = -157.136765 kcal Electronic energy + Delta-G solvation = -17791.208438 eV Core-core repulsion = 14250.018660 eV Total energy + Delta-G solvation = -3541.189778 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.065 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.52805 -49.59002 -41.37288 -39.94764 -38.05063 -36.02756 -33.40204 -32.21950 -30.80151 -29.40415 -26.58040 -24.45104 -23.49144 -21.38185 -20.10548 -19.74608 -18.53845 -18.44513 -17.84503 -17.53856 -17.07723 -16.91056 -16.63461 -16.02264 -15.90915 -15.51930 -15.30569 -15.14629 -15.01360 -14.24124 -13.81325 -13.54225 -13.28446 -13.26049 -12.90726 -12.46084 -12.22209 -12.11716 -11.89915 -11.56651 -10.46611 -10.16521 -10.08910 -9.30358 -8.51401 -6.00763 -0.17322 -0.03247 1.36981 1.43282 1.53838 1.71234 1.91493 2.28697 2.32600 2.79025 3.15058 3.18228 3.32948 3.57691 3.75964 3.94036 4.05292 4.21339 4.25203 4.32604 4.70853 4.79711 4.91686 5.06397 5.38674 5.50884 5.89921 6.18775 6.52893 7.06318 7.44060 7.99484 8.65234 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.059621 B = 0.003587 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.519238 B = 7805.157507 C = 8259.531318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.006 4.006 3 Si 0.993 3.007 4 H -0.270 1.270 5 H -0.269 1.269 6 H -0.274 1.274 7 C -0.338 4.338 8 H 0.079 0.921 9 N -0.557 5.557 10 C 0.432 3.568 11 O -0.627 6.627 12 C 0.060 3.940 13 O -0.308 6.308 14 C 0.143 3.857 15 C -0.182 4.182 16 C -0.066 4.066 17 C 0.014 3.986 18 F -0.137 7.137 19 C 0.098 3.902 20 F -0.133 7.133 21 C -0.173 4.173 22 H 0.281 0.719 23 H 0.403 0.597 24 H 0.119 0.881 25 H 0.119 0.881 26 H 0.176 0.824 27 H 0.185 0.815 28 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.847 -14.435 -0.004 15.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.207 4.207 3 Si 0.816 3.184 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.199 1.199 7 C -0.467 4.467 8 H 0.097 0.903 9 N -0.195 5.195 10 C 0.219 3.781 11 O -0.514 6.514 12 C -0.018 4.018 13 O -0.220 6.220 14 C 0.097 3.903 15 C -0.201 4.201 16 C -0.084 4.084 17 C -0.006 4.006 18 F -0.116 7.116 19 C 0.078 3.922 20 F -0.111 7.111 21 C -0.193 4.193 22 H 0.090 0.910 23 H 0.238 0.762 24 H 0.137 0.863 25 H 0.137 0.863 26 H 0.193 0.807 27 H 0.202 0.798 28 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -4.981 -14.297 -0.002 15.140 hybrid contribution 0.137 0.373 -0.006 0.398 sum -4.844 -13.924 -0.008 14.743 Atomic orbital electron populations 1.69640 1.06671 1.29633 1.49236 1.26018 0.96590 1.02292 0.95812 0.84928 0.77907 0.76813 0.78721 1.19583 1.19356 1.19920 1.19649 0.92797 0.83654 1.50621 0.90289 1.41701 1.09606 1.04035 1.64142 1.20362 0.88098 0.85824 0.83767 1.90548 1.16160 1.87855 1.56828 1.22516 0.90797 0.82481 1.06022 1.86180 1.36057 1.11995 1.87788 1.18931 0.92590 0.84083 0.94729 1.21586 0.93060 0.99590 1.05841 1.21178 1.01906 0.89040 0.96289 1.17717 0.89867 0.81279 1.11762 1.91498 1.86836 1.38665 1.94628 1.17300 0.86617 0.83491 1.04807 1.91513 1.72040 1.53627 1.93947 1.20207 1.02045 0.88342 1.08665 0.90990 0.76231 0.86311 0.86304 0.80674 0.79815 0.83107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.14 13.05 21.66 0.28 -45.86 15 2 C -0.01 -0.31 5.50 84.93 0.47 0.16 15 3 Si 0.99 41.01 29.55 68.60 2.03 43.03 15 4 H -0.27 -10.87 7.11 99.48 0.71 -10.17 15 5 H -0.27 -10.47 7.11 99.48 0.71 -9.76 15 6 H -0.27 -11.52 7.11 99.48 0.71 -10.81 15 7 C -0.34 -18.35 9.68 84.04 0.81 -17.54 15 8 H 0.08 4.64 7.16 -2.91 -0.02 4.62 15 9 N -0.56 -26.64 5.29 -307.00 -1.62 -28.27 15 10 C 0.43 19.64 7.86 87.66 0.69 20.33 15 11 O -0.63 -35.05 16.08 15.97 0.26 -34.79 15 12 C 0.06 1.80 5.22 71.23 0.37 2.17 15 13 O -0.31 -10.20 9.67 -73.81 -0.71 -10.91 15 14 C 0.14 3.66 6.68 22.49 0.15 3.81 15 15 C -0.18 -3.30 9.03 22.37 0.20 -3.10 15 16 C -0.07 -1.06 10.02 22.29 0.22 -0.84 15 17 C 0.01 0.30 7.30 22.41 0.16 0.46 15 18 F -0.14 -3.12 17.18 44.97 0.77 -2.35 15 19 C 0.10 2.38 7.30 22.40 0.16 2.54 15 20 F -0.13 -3.44 17.18 44.97 0.77 -2.66 15 21 C -0.17 -4.39 9.96 22.40 0.22 -4.17 15 22 H 0.28 13.28 8.31 -92.71 -0.77 12.51 15 23 H 0.40 17.51 7.90 -92.70 -0.73 16.77 15 24 H 0.12 2.74 7.66 -2.39 -0.02 2.72 15 25 H 0.12 2.74 7.66 -2.39 -0.02 2.72 15 26 H 0.18 2.21 6.29 -2.91 -0.02 2.19 15 27 H 0.18 1.67 8.06 -2.91 -0.02 1.65 15 28 H 0.15 3.81 8.06 -2.91 -0.02 3.79 15 Total: -1.00 -67.50 268.97 5.74 -61.76 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.50 Total: 16.22 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: 3.47 Total: 3.83 kcal Atomic # 7 Polarization: -72.79 SS G_CDS: -1.34 Total: -74.13 kcal Atomic # 8 Polarization: -45.25 SS G_CDS: -0.46 Total: -45.71 kcal Atomic # 9 Polarization: -6.55 SS G_CDS: 1.55 Total: -5.01 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.03 kcal Total: -67.50 5.74 -61.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731158079.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.377 kcal (2) G-P(sol) polarization free energy of solvation -67.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds