Wall clock time and date at job start Mon Mar 30 2020 04:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86798 * 119.99954 * 2 1 4 4 H 1.48499 * 109.47281 * 269.99448 * 3 2 1 5 5 H 1.48495 * 109.47177 * 29.99830 * 3 2 1 6 6 H 1.48504 * 109.47316 * 149.99807 * 3 2 1 7 7 C 1.37881 * 120.00049 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99985 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00050 * 180.02562 * 7 2 1 10 10 N 1.46492 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.34780 * 120.00042 * 179.97438 * 10 9 7 12 12 O 1.21622 * 120.00150 * 0.02562 * 11 10 9 13 13 C 1.47277 * 120.00034 * 179.97438 * 11 10 9 14 14 C 1.40303 * 120.18978 * 270.00096 * 13 11 10 15 15 O 1.35655 * 120.12269 * 359.97438 * 14 13 11 16 16 C 1.38463 * 119.75178 * 179.70522 * 14 13 11 17 17 C 1.38470 * 120.13400 * 0.27844 * 16 14 13 18 18 F 1.35102 * 119.80965 * 179.97438 * 17 16 14 19 19 C 1.38669 * 120.38041 * 359.97438 * 17 16 14 20 20 C 1.38055 * 120.24239 * 0.02869 * 19 17 16 21 21 F 1.35100 * 120.06697 * 179.97438 * 20 19 17 22 22 H 0.97004 * 120.00482 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47152 * 59.99793 * 9 7 2 24 24 H 1.09007 * 109.46919 * 300.00283 * 9 7 2 25 25 H 0.97001 * 120.00177 * 359.97438 * 10 9 7 26 26 H 0.96700 * 114.00230 * 269.72625 * 15 14 13 27 27 H 1.08001 * 119.92789 * 180.25746 * 16 14 13 28 28 H 1.07996 * 119.87622 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9997 -2.5752 0.0010 11 6 5.3248 -2.8215 0.0009 12 8 6.1152 -1.8971 0.0014 13 6 5.8158 -4.2101 0.0014 14 6 6.0510 -4.8748 1.2143 15 8 5.8277 -4.2408 2.3926 16 6 6.5067 -6.1823 1.2042 17 6 6.7349 -6.8296 0.0016 18 9 7.1800 -8.1052 -0.0007 19 6 6.5092 -6.1761 -1.2005 20 6 6.0550 -4.8724 -1.2086 21 9 5.8368 -4.2390 -2.3818 22 1 -0.4851 0.8400 -0.0004 23 1 3.8745 -0.6800 0.8911 24 1 3.8751 -0.6804 -0.8889 25 1 3.3694 -3.3125 0.0010 26 1 6.5971 -3.7663 2.7360 27 1 6.6848 -6.6981 2.1362 28 1 6.6903 -6.6886 -2.1337 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787622775.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:09 Heat of formation + Delta-G solvation = -142.769540 kcal Electronic energy + Delta-G solvation = -18416.023854 eV Core-core repulsion = 14875.457085 eV Total energy + Delta-G solvation = -3540.566769 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.065 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.35970 -49.18534 -40.22945 -38.37259 -36.70351 -34.39641 -32.43303 -30.98870 -30.33156 -27.88032 -24.15892 -23.30520 -22.05637 -20.31454 -19.24269 -18.07714 -17.80812 -17.20753 -16.44350 -16.27523 -16.05938 -15.64224 -15.26100 -14.98865 -14.92034 -14.46365 -14.25609 -13.93428 -13.22356 -12.61327 -12.38194 -12.35236 -12.06289 -11.86297 -11.28116 -11.08601 -10.79779 -10.01258 -9.60576 -9.51454 -9.17689 -9.02234 -8.81046 -8.27314 -6.22905 -4.25707 0.44754 0.60568 2.80726 2.88561 3.25529 3.28165 3.32368 3.39687 3.74025 3.91011 4.04418 4.31549 4.49039 4.61032 4.90671 5.12060 5.17383 5.42446 5.54579 5.58750 5.72036 6.27647 6.72479 7.00981 7.07072 7.27524 7.32152 8.03013 8.41947 8.64254 8.78985 9.35949 10.89010 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.034373 B = 0.005094 C = 0.004958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.403882 B = 5495.627645 C = 5646.004248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.079 3.921 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.545 4.545 8 H 0.081 0.919 9 C 0.220 3.780 10 N -0.684 5.684 11 C 0.555 3.445 12 O -0.545 6.545 13 C -0.191 4.191 14 C 0.204 3.796 15 O -0.479 6.479 16 C -0.195 4.195 17 C 0.157 3.843 18 F -0.126 7.126 19 C -0.204 4.204 20 C 0.181 3.819 21 F -0.114 7.114 22 H 0.268 0.732 23 H 0.029 0.971 24 H 0.024 0.976 25 H 0.400 0.600 26 H 0.405 0.595 27 H 0.154 0.846 28 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.865 -13.536 1.249 19.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.125 4.125 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.583 4.583 8 H 0.099 0.901 9 C 0.098 3.902 10 N -0.331 5.331 11 C 0.338 3.662 12 O -0.425 6.425 13 C -0.196 4.196 14 C 0.157 3.843 15 O -0.291 6.291 16 C -0.214 4.214 17 C 0.138 3.862 18 F -0.104 7.104 19 C -0.223 4.223 20 C 0.161 3.839 21 F -0.092 7.092 22 H 0.078 0.922 23 H 0.047 0.953 24 H 0.042 0.958 25 H 0.234 0.766 26 H 0.265 0.735 27 H 0.172 0.828 28 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 13.658 -12.952 1.161 18.859 hybrid contribution 0.466 0.557 -0.186 0.749 sum 14.124 -12.395 0.974 18.817 Atomic orbital electron populations 1.69874 1.06210 1.27474 1.49231 1.24781 0.94795 0.99138 0.93813 0.86821 0.80566 0.83235 0.79098 1.19788 1.20821 1.18491 1.21060 0.88302 0.95353 1.53539 0.90146 1.19594 0.95512 0.78037 0.97070 1.46179 1.05044 1.11549 1.70305 1.17634 0.83781 0.86691 0.78105 1.90790 1.55675 1.44701 1.51300 1.20657 1.08677 0.97465 0.92763 1.17664 0.92673 0.89580 0.84379 1.84756 1.40981 1.69529 1.33815 1.21311 1.05881 0.95804 0.98449 1.17032 0.96757 0.79417 0.93038 1.91555 1.86313 1.35246 1.97317 1.20921 1.07689 0.94399 0.99334 1.16958 0.96826 0.89639 0.80525 1.91611 1.91606 1.81603 1.44428 0.92198 0.95289 0.95823 0.76633 0.73537 0.82816 0.82602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.48 13.96 55.43 0.77 -25.70 15 2 C 0.08 2.23 5.47 -17.82 -0.10 2.13 15 3 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 15 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 15 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 6 H -0.26 -6.27 6.54 56.52 0.37 -5.90 15 7 C -0.54 -15.04 9.83 -34.44 -0.34 -15.37 15 8 H 0.08 2.32 7.84 -52.49 -0.41 1.91 15 9 C 0.22 5.44 4.50 -5.20 -0.02 5.42 15 10 N -0.68 -14.40 5.54 -62.61 -0.35 -14.75 15 11 C 0.56 10.96 6.42 -12.58 -0.08 10.87 15 12 O -0.55 -12.48 17.11 5.26 0.09 -12.39 15 13 C -0.19 -2.90 5.64 -104.79 -0.59 -3.49 15 14 C 0.20 2.53 6.71 -38.72 -0.26 2.27 15 15 O -0.48 -5.77 12.95 -18.66 -0.24 -6.01 15 16 C -0.20 -1.93 9.95 -39.41 -0.39 -2.32 15 17 C 0.16 1.58 7.30 -39.34 -0.29 1.29 15 18 F -0.13 -1.22 17.26 2.25 0.04 -1.19 15 19 C -0.20 -2.15 9.98 -39.49 -0.39 -2.54 15 20 C 0.18 2.47 7.28 -38.99 -0.28 2.19 15 21 F -0.11 -1.76 16.83 2.25 0.04 -1.72 15 22 H 0.27 7.44 8.31 -40.82 -0.34 7.10 15 23 H 0.03 0.75 7.20 -51.93 -0.37 0.37 15 24 H 0.02 0.61 7.57 -51.92 -0.39 0.22 15 25 H 0.40 7.68 8.30 -40.82 -0.34 7.34 15 26 H 0.41 3.14 9.06 45.56 0.41 3.56 15 27 H 0.15 1.16 8.06 -52.49 -0.42 0.74 15 28 H 0.16 1.28 8.06 -52.49 -0.42 0.86 15 LS Contribution 269.35 15.07 4.06 4.06 Total: -1.00 -32.74 269.35 -4.12 -36.87 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -1.12 Total: 3.72 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -2.75 Total: 0.44 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: 0.43 Total: -40.45 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.15 Total: -18.41 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.08 Total: -2.90 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -32.74 -4.12 -36.87 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787622775.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.901 kcal (2) G-P(sol) polarization free energy of solvation -32.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds