Wall clock time and date at job start Mon Mar 30 2020 04:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00307 * 2 1 4 4 H 1.48501 * 109.47151 * 269.99542 * 3 2 1 5 5 H 1.48498 * 109.47184 * 29.99497 * 3 2 1 6 6 H 1.48498 * 109.47171 * 149.99470 * 3 2 1 7 7 C 1.37884 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00016 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99709 * 0.02562 * 7 2 1 10 10 S 1.81399 * 109.47147 * 179.97438 * 9 7 2 11 11 C 1.81394 * 102.99894 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46950 * 179.97438 * 11 10 9 13 13 H 1.09000 * 110.46924 * 305.70060 * 12 11 10 14 14 C 1.54091 * 110.52232 * 183.07108 * 12 11 10 15 15 N 1.47094 * 103.77876 * 241.36853 * 14 12 11 16 16 C 1.46499 * 125.56108 * 180.02562 * 15 14 12 17 17 C 1.53004 * 117.49647 * 188.74573 * 16 15 14 18 18 C 1.53005 * 117.50017 * 120.08948 * 16 15 14 19 19 C 1.34005 * 108.87832 * 0.02562 * 15 14 12 20 20 O 1.21518 * 123.07080 * 180.02562 * 19 15 14 21 21 O 1.34063 * 113.90295 * 359.91663 * 19 15 14 22 22 H 0.97006 * 119.99966 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46980 * 59.99845 * 9 7 2 24 24 H 1.09004 * 109.47113 * 299.99826 * 9 7 2 25 25 H 1.09002 * 109.47501 * 299.99574 * 11 10 9 26 26 H 1.08998 * 109.47135 * 60.00434 * 11 10 9 27 27 H 1.08994 * 110.56626 * 359.94217 * 14 12 11 28 28 H 1.09000 * 110.56772 * 122.64826 * 14 12 11 29 29 H 1.08995 * 115.55057 * 334.41495 * 16 15 14 30 30 H 1.09000 * 117.50095 * 0.02562 * 17 16 15 31 31 H 1.09006 * 117.49426 * 145.02009 * 17 16 15 32 32 H 1.08993 * 117.49675 * 214.98181 * 18 16 15 33 33 H 1.09000 * 117.49400 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 16 2.4297 -3.8780 0.0005 11 6 1.3513 -5.3366 0.0013 12 6 2.2081 -6.6042 0.0008 13 1 2.9147 -6.5864 -0.8290 14 6 1.3167 -7.8588 -0.0759 15 7 1.6168 -8.5785 1.1713 16 6 1.0215 -9.8517 1.5846 17 6 1.3086 -10.3371 3.0069 18 6 1.9671 -11.0327 1.8129 19 6 2.5235 -7.8797 1.8678 20 8 2.9565 -8.2423 2.9438 21 8 2.9117 -6.7448 1.2688 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5571 -0.8897 24 1 0.6239 -2.5567 0.8903 25 1 0.7225 -5.3232 0.8916 26 1 0.7219 -5.3236 -0.8885 27 1 0.2639 -7.5788 -0.1125 28 1 1.5811 -8.4640 -0.9430 29 1 0.0378 -10.0679 1.1680 30 1 1.9401 -9.7089 3.6352 31 1 0.5138 -10.8730 3.5259 32 1 1.6053 -12.0258 1.5468 33 1 3.0321 -10.8624 1.6552 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845322308.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:02 Heat of formation + Delta-G solvation = -41.774773 kcal Electronic energy + Delta-G solvation = -16539.683563 eV Core-core repulsion = 13693.169737 eV Total energy + Delta-G solvation = -2846.513826 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.087 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.67967 -38.04737 -36.82111 -33.94395 -33.17653 -31.89000 -28.58312 -26.51405 -24.02100 -23.36178 -22.66734 -22.34068 -20.29951 -17.71561 -17.20046 -16.62924 -16.21218 -15.99459 -15.24948 -14.79863 -14.63754 -14.31900 -13.86984 -13.52817 -13.24815 -13.01243 -12.85940 -12.44311 -11.97309 -11.87659 -11.81892 -11.33963 -10.89689 -10.82446 -10.68150 -10.63466 -10.21701 -10.00440 -9.58736 -8.93297 -8.88907 -8.63987 -6.74867 -6.22367 -4.26534 2.17434 2.48098 2.63726 3.25456 3.31228 3.33759 3.37263 3.57758 3.74287 4.06186 4.34017 4.34834 4.44374 4.56302 4.73878 4.84310 5.02154 5.15205 5.15694 5.19607 5.42797 5.49553 5.64251 5.79494 5.82159 6.03889 6.38912 7.02699 7.05636 7.31546 7.72625 7.97265 7.98751 8.75447 9.36933 10.89016 Molecular weight = 257.09amu Principal moments of inertia in cm(-1) A = 0.054814 B = 0.003723 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.698482 B = 7519.640995 C = 7624.153518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.065 3.935 3 Si 0.907 3.093 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.513 4.513 8 H 0.068 0.932 9 C 0.089 3.911 10 S -0.282 6.282 11 C -0.108 4.108 12 C 0.093 3.907 13 H 0.124 0.876 14 C 0.077 3.923 15 N -0.608 5.608 16 C 0.098 3.902 17 C -0.187 4.187 18 C -0.191 4.191 19 C 0.642 3.358 20 O -0.522 6.522 21 O -0.304 6.304 22 H 0.266 0.734 23 H 0.036 0.964 24 H 0.036 0.964 25 H 0.083 0.917 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.135 0.865 30 H 0.132 0.868 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.289 -19.906 -1.721 20.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.138 4.138 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.552 4.552 8 H 0.086 0.914 9 C -0.058 4.058 10 S -0.055 6.055 11 C -0.256 4.256 12 C 0.036 3.964 13 H 0.142 0.858 14 C -0.048 4.048 15 N -0.354 5.354 16 C -0.005 4.005 17 C -0.225 4.225 18 C -0.229 4.229 19 C 0.397 3.603 20 O -0.408 6.408 21 O -0.213 6.213 22 H 0.075 0.925 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.102 0.898 26 H 0.117 0.883 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.153 0.847 30 H 0.150 0.850 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.043 -19.737 -1.090 19.767 hybrid contribution -1.189 0.858 -0.209 1.481 sum -1.146 -18.879 -1.299 18.959 Atomic orbital electron populations 1.69948 1.06165 1.27396 1.49666 1.24963 0.94984 0.99321 0.94571 0.86335 0.79811 0.82097 0.78349 1.20326 1.20960 1.19466 1.20670 0.93534 0.88662 1.52340 0.91381 1.21091 0.93694 0.90911 1.00106 1.86885 1.19777 1.00935 1.97940 1.23586 1.00584 0.95855 1.05622 1.23581 0.93808 0.93607 0.85431 0.85787 1.22932 1.01582 0.92361 0.87944 1.47402 1.43969 1.22759 1.21268 1.21341 0.96904 0.81223 1.00995 1.23790 1.04095 1.03136 0.91434 1.23420 0.99642 0.96565 1.03298 1.18765 0.78496 0.79173 0.83913 1.90897 1.60539 1.70059 1.19276 1.87590 1.61224 1.38288 1.34243 0.92473 0.94549 0.94551 0.89821 0.88342 0.88621 0.88552 0.84705 0.84981 0.88178 0.87994 0.88566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.77 13.29 55.43 0.74 -25.04 16 2 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 3 Si 0.91 21.34 29.54 -169.99 -5.02 16.31 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.51 -14.40 9.13 -34.44 -0.31 -14.71 16 8 H 0.07 1.92 7.71 -52.49 -0.40 1.52 16 9 C 0.09 2.26 5.70 36.01 0.21 2.47 16 10 S -0.28 -5.98 21.56 -107.50 -2.32 -8.30 16 11 C -0.11 -1.63 5.49 37.16 0.20 -1.42 16 12 C 0.09 1.16 3.82 -26.16 -0.10 1.06 16 13 H 0.12 1.37 8.14 -51.93 -0.42 0.94 16 14 C 0.08 0.68 7.34 -3.15 -0.02 0.66 16 15 N -0.61 -7.04 3.30 -171.13 -0.56 -7.61 16 16 C 0.10 0.90 6.95 -67.93 -0.47 0.43 16 17 C -0.19 -1.88 9.78 -26.69 -0.26 -2.14 16 18 C -0.19 -1.67 10.36 -26.69 -0.28 -1.94 16 19 C 0.64 10.18 8.74 53.71 0.47 10.65 16 20 O -0.52 -9.68 14.65 -19.11 -0.28 -9.96 16 21 O -0.30 -5.07 10.71 -38.58 -0.41 -5.48 16 22 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 23 H 0.04 0.94 8.14 -51.92 -0.42 0.52 16 24 H 0.04 0.97 8.14 -51.92 -0.42 0.55 16 25 H 0.08 1.31 8.14 -51.92 -0.42 0.89 16 26 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.10 0.70 7.73 -51.93 -0.40 0.30 16 28 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.14 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.13 1.79 5.34 -51.93 -0.28 1.51 16 31 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 297.64 15.07 4.49 4.49 Total: -1.00 -32.73 297.64 -8.49 -41.22 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: -4.45 Total: -2.41 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -0.67 Total: -3.22 kcal Atomic # 7 Polarization: -32.82 SS G_CDS: 0.17 Total: -32.64 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.69 Total: -15.44 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -5.98 SS G_CDS: -2.32 Total: -8.30 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.73 -8.49 -41.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845322308.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.556 kcal (2) G-P(sol) polarization free energy of solvation -32.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds