Wall clock time and date at job start Mon Mar 30 2020 04:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47204 * 6.85940 * 3 2 1 5 5 C 1.53003 * 109.47175 * 179.97438 * 4 3 2 6 6 S 1.81393 * 109.47501 * 179.97438 * 5 4 3 7 7 O 1.42102 * 110.54287 * 68.37682 * 6 5 4 8 8 O 1.42100 * 110.54135 * 291.62451 * 6 5 4 9 9 N 1.65596 * 104.45231 * 180.02562 * 6 5 4 10 10 C 1.47586 * 134.49190 * 89.99576 * 9 6 5 11 11 C 1.53950 * 86.11354 * 155.36007 * 10 9 6 12 12 C 1.50706 * 113.73627 * 137.95493 * 11 10 9 13 13 H 1.07995 * 120.00167 * 1.64697 * 12 11 10 14 14 C 1.37879 * 119.99394 * 181.92396 * 12 11 10 15 15 N 1.31514 * 120.00338 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99424 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47474 * 90.00322 * 16 14 12 18 18 H 1.48507 * 109.46754 * 210.00056 * 16 14 12 19 19 H 1.48498 * 109.47278 * 329.99887 * 16 14 12 20 20 C 1.47813 * 134.45968 * 269.86716 * 9 6 5 21 21 H 4.44644 * 5.63430 * 180.02562 * 4 1 2 22 22 H 1.09003 * 109.47061 * 246.85445 * 3 2 1 23 23 H 1.09002 * 109.46838 * 126.86061 * 3 2 1 24 24 H 1.08998 * 109.47540 * 60.00267 * 4 3 2 25 25 H 1.09002 * 109.47322 * 299.99825 * 4 3 2 26 26 H 1.09003 * 109.47015 * 59.99551 * 5 4 3 27 27 H 1.09002 * 109.46913 * 300.00150 * 5 4 3 28 28 H 1.09008 * 113.76654 * 41.06239 * 10 9 6 29 29 H 1.08993 * 113.87299 * 269.67717 * 10 9 6 30 30 H 1.09000 * 113.74485 * 269.15566 * 11 10 9 31 31 H 0.96996 * 119.99730 * 179.97438 * 15 14 12 32 32 H 1.09002 * 113.76703 * 90.37808 * 20 9 6 33 33 H 1.08998 * 113.83277 * 318.91786 * 20 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1567 -1.4312 -0.1723 5 6 4.6867 -1.4305 -0.1729 6 16 5.2923 -3.1282 -0.3764 7 8 4.9959 -3.6104 -1.6798 8 8 4.9971 -3.9044 0.7767 9 7 6.9418 -2.9835 -0.3592 10 6 7.9721 -3.0183 0.6970 11 6 8.9476 -3.4458 -0.4146 12 6 10.2928 -2.7711 -0.3338 13 1 10.5037 -2.0817 0.4702 14 6 11.2522 -3.0298 -1.2897 15 7 10.9934 -3.8649 -2.2721 16 14 12.9198 -2.1941 -1.1891 17 1 13.8469 -3.0337 -0.3884 18 1 13.4685 -2.0180 -2.5578 19 1 12.7698 -0.8663 -0.5412 20 6 7.9732 -2.7699 -1.3962 21 1 -1.0497 -0.0005 -0.0003 22 1 3.0092 0.4048 0.9450 23 1 3.0091 0.6173 -0.8223 24 1 2.7937 -1.8353 -1.1172 25 1 2.7937 -2.0479 0.6500 26 1 5.0503 -1.0262 0.7719 27 1 5.0494 -0.8139 -0.9954 28 1 7.8020 -3.7864 1.4515 29 1 8.1964 -2.0421 1.1268 30 1 9.0209 -4.5258 -0.5428 31 1 11.6682 -4.0466 -2.9447 32 1 8.1967 -1.7197 -1.5838 33 1 7.8040 -3.3399 -2.3097 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849432867.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:20 Heat of formation + Delta-G solvation = 2.690665 kcal Electronic energy + Delta-G solvation = -16693.450290 eV Core-core repulsion = 13848.864630 eV Total energy + Delta-G solvation = -2844.585660 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.087 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.01317 -36.66064 -36.15481 -35.51823 -32.60530 -32.53578 -28.33679 -27.79724 -25.15736 -24.51828 -22.42571 -19.74500 -18.63011 -17.99391 -17.05979 -16.58581 -16.18958 -15.90238 -15.17496 -14.60198 -14.28182 -14.06273 -13.38799 -13.30206 -12.97083 -12.73867 -12.12657 -11.74990 -11.69875 -11.65652 -11.53607 -11.40351 -11.26727 -10.98494 -10.86936 -10.55291 -10.33857 -10.33492 -10.24421 -9.28020 -9.03154 -8.59992 -8.17552 -6.14520 -4.20394 0.59877 2.57066 2.61498 3.07912 3.25011 3.32816 3.34352 4.00437 4.26987 4.33520 4.34898 4.64836 4.70609 4.88834 5.14183 5.19973 5.30921 5.51131 5.70264 5.70380 5.76602 5.83964 6.19512 6.25335 6.36900 6.43469 6.73790 6.90403 7.38383 7.52049 7.64161 7.83625 8.21559 8.82521 9.45511 10.94802 Molecular weight = 257.09amu Principal moments of inertia in cm(-1) A = 0.039970 B = 0.004316 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.361804 B = 6485.343718 C = 6750.371134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.187 4.187 3 C -0.006 4.006 4 C -0.106 4.106 5 C -0.645 4.645 6 S 2.615 3.385 7 O -0.959 6.959 8 O -0.964 6.964 9 N -1.032 6.032 10 C 0.119 3.881 11 C 0.040 3.960 12 C -0.520 4.520 13 H 0.063 0.937 14 C 0.067 3.933 15 N -0.884 5.884 16 Si 0.895 3.105 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.273 1.273 20 C 0.129 3.871 21 H 0.217 0.783 22 H 0.091 0.909 23 H 0.091 0.909 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.130 0.870 27 H 0.131 0.869 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.264 0.736 32 H 0.071 0.929 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.911 7.573 3.839 15.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.187 4.187 3 C -0.043 4.043 4 C -0.145 4.145 5 C -0.772 4.772 6 S 2.710 3.290 7 O -0.950 6.950 8 O -0.955 6.955 9 N -0.873 5.873 10 C -0.006 4.006 11 C 0.018 3.982 12 C -0.559 4.559 13 H 0.081 0.919 14 C -0.137 4.137 15 N -0.521 5.521 16 Si 0.723 3.277 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.198 1.198 20 C 0.004 3.996 21 H 0.234 0.766 22 H 0.109 0.891 23 H 0.110 0.890 24 H 0.099 0.901 25 H 0.099 0.901 26 H 0.148 0.852 27 H 0.149 0.851 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.584 6.681 3.568 15.552 hybrid contribution 0.685 1.362 0.004 1.525 sum -12.898 8.043 3.572 15.615 Atomic orbital electron populations 1.24916 0.95968 1.00512 1.01322 1.23163 0.94587 1.00667 1.00321 1.18706 0.84601 0.97175 1.03848 1.21228 0.91258 0.97978 1.04016 1.30900 1.05100 1.29480 1.11681 1.04865 0.73039 0.77046 0.74076 1.93559 1.83713 1.77981 1.39731 1.93541 1.83892 1.66229 1.51791 1.60443 1.19289 1.87299 1.20290 1.23088 0.85150 1.00122 0.92216 1.20517 0.91290 0.97722 0.88638 1.21037 0.97156 1.26612 1.11096 0.91877 1.25045 0.98620 0.94784 0.95251 1.69958 1.34734 1.34226 1.13180 0.86557 0.83959 0.79890 0.77340 1.20551 1.21223 1.19805 1.23311 0.83452 1.00333 0.92460 0.76577 0.89076 0.89040 0.90063 0.90100 0.85204 0.85096 0.91626 0.91055 0.91696 0.92612 0.91117 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.00 19.25 29.55 0.57 -1.43 16 2 C -0.19 -2.02 13.34 -37.12 -0.50 -2.51 16 3 C -0.01 -0.06 5.70 -29.52 -0.17 -0.22 16 4 C -0.11 -1.18 5.18 -26.73 -0.14 -1.32 16 5 C -0.64 -7.55 6.18 37.16 0.23 -7.32 16 6 S 2.61 44.12 5.93 -107.50 -0.64 43.48 16 7 O -0.96 -19.20 18.02 -57.54 -1.04 -20.24 16 8 O -0.96 -18.65 18.02 -57.54 -1.04 -19.69 16 9 N -1.03 -19.36 4.00 -118.61 -0.47 -19.84 16 10 C 0.12 2.27 8.47 -2.96 -0.03 2.25 16 11 C 0.04 0.93 3.60 -90.84 -0.33 0.60 16 12 C -0.52 -12.98 8.77 -34.44 -0.30 -13.28 16 13 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 14 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.88 -24.16 13.29 55.43 0.74 -23.42 16 16 Si 0.89 19.86 29.54 -169.99 -5.02 14.84 16 17 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 20 C 0.13 2.73 8.48 -2.84 -0.02 2.70 16 21 H 0.22 1.28 7.80 -54.10 -0.42 0.86 16 22 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 23 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 25 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.13 1.29 8.14 -51.92 -0.42 0.87 16 27 H 0.13 1.35 8.14 -51.92 -0.42 0.93 16 28 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 29 H 0.07 1.21 8.09 -51.93 -0.42 0.79 16 30 H 0.06 1.66 8.14 -51.93 -0.42 1.23 16 31 H 0.26 6.88 8.31 -40.82 -0.34 6.55 16 32 H 0.07 1.40 8.09 -51.93 -0.42 0.98 16 33 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 LS Contribution 307.94 15.07 4.64 4.64 Total: -1.00 -31.45 307.94 -8.22 -39.68 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -4.61 Total: -0.54 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: -0.78 Total: -18.91 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: 0.26 Total: -43.26 kcal Atomic # 8 Polarization: -37.85 SS G_CDS: -2.07 Total: -39.93 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Atomic # 16 Polarization: 44.12 SS G_CDS: -0.64 Total: 43.48 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.45 -8.22 -39.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849432867.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.366 kcal (2) G-P(sol) polarization free energy of solvation -31.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds