Wall clock time and date at job start Mon Mar 30 2020 04:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47204 * 6.85940 * 3 2 1 5 5 C 1.53003 * 109.47175 * 179.97438 * 4 3 2 6 6 S 1.81393 * 109.47501 * 179.97438 * 5 4 3 7 7 O 1.42102 * 110.54287 * 68.37682 * 6 5 4 8 8 O 1.42100 * 110.54135 * 291.62451 * 6 5 4 9 9 N 1.65596 * 104.45231 * 180.02562 * 6 5 4 10 10 C 1.47586 * 134.49190 * 89.99576 * 9 6 5 11 11 C 1.53950 * 86.11354 * 155.36007 * 10 9 6 12 12 C 1.50706 * 113.73627 * 137.95493 * 11 10 9 13 13 H 1.07995 * 120.00167 * 1.64697 * 12 11 10 14 14 C 1.37879 * 119.99394 * 181.92396 * 12 11 10 15 15 N 1.31514 * 120.00338 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99424 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47474 * 90.00322 * 16 14 12 18 18 H 1.48507 * 109.46754 * 210.00056 * 16 14 12 19 19 H 1.48498 * 109.47278 * 329.99887 * 16 14 12 20 20 C 1.47813 * 134.45968 * 269.86716 * 9 6 5 21 21 H 4.44644 * 5.63430 * 180.02562 * 4 1 2 22 22 H 1.09003 * 109.47061 * 246.85445 * 3 2 1 23 23 H 1.09002 * 109.46838 * 126.86061 * 3 2 1 24 24 H 1.08998 * 109.47540 * 60.00267 * 4 3 2 25 25 H 1.09002 * 109.47322 * 299.99825 * 4 3 2 26 26 H 1.09003 * 109.47015 * 59.99551 * 5 4 3 27 27 H 1.09002 * 109.46913 * 300.00150 * 5 4 3 28 28 H 1.09008 * 113.76654 * 41.06239 * 10 9 6 29 29 H 1.08993 * 113.87299 * 269.67717 * 10 9 6 30 30 H 1.09000 * 113.74485 * 269.15566 * 11 10 9 31 31 H 0.96996 * 119.99730 * 179.97438 * 15 14 12 32 32 H 1.09002 * 113.76703 * 90.37808 * 20 9 6 33 33 H 1.08998 * 113.83277 * 318.91786 * 20 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1567 -1.4312 -0.1723 5 6 4.6867 -1.4305 -0.1729 6 16 5.2923 -3.1282 -0.3764 7 8 4.9959 -3.6104 -1.6798 8 8 4.9971 -3.9044 0.7767 9 7 6.9418 -2.9835 -0.3592 10 6 7.9721 -3.0183 0.6970 11 6 8.9476 -3.4458 -0.4146 12 6 10.2928 -2.7711 -0.3338 13 1 10.5037 -2.0817 0.4702 14 6 11.2522 -3.0298 -1.2897 15 7 10.9934 -3.8649 -2.2721 16 14 12.9198 -2.1941 -1.1891 17 1 13.8469 -3.0337 -0.3884 18 1 13.4685 -2.0180 -2.5578 19 1 12.7698 -0.8663 -0.5412 20 6 7.9732 -2.7699 -1.3962 21 1 -1.0497 -0.0005 -0.0003 22 1 3.0092 0.4048 0.9450 23 1 3.0091 0.6173 -0.8223 24 1 2.7937 -1.8353 -1.1172 25 1 2.7937 -2.0479 0.6500 26 1 5.0503 -1.0262 0.7719 27 1 5.0494 -0.8139 -0.9954 28 1 7.8020 -3.7864 1.4515 29 1 8.1964 -2.0421 1.1268 30 1 9.0209 -4.5258 -0.5428 31 1 11.6682 -4.0466 -2.9447 32 1 8.1967 -1.7197 -1.5838 33 1 7.8040 -3.3399 -2.3097 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849432867.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:20 Heat of formation + Delta-G solvation = -18.886238 kcal Electronic energy + Delta-G solvation = -16694.385934 eV Core-core repulsion = 13848.864630 eV Total energy + Delta-G solvation = -2845.521304 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.087 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.63586 -38.13346 -37.06561 -36.87679 -34.52355 -33.33862 -30.02946 -28.68281 -26.75754 -26.31444 -23.34386 -21.43658 -19.74628 -19.05309 -18.74821 -18.13822 -17.34417 -17.25328 -16.45732 -16.22967 -15.69743 -15.08411 -14.67114 -14.44267 -14.27278 -13.99075 -13.50271 -13.25463 -13.16968 -13.11002 -13.02440 -12.97960 -12.75742 -12.25815 -12.25399 -12.12068 -11.94446 -11.15508 -11.02702 -11.01932 -10.84283 -10.51984 -9.71280 -8.09415 -6.20868 -0.73129 1.50568 1.52214 1.61568 1.65407 1.85403 1.89861 2.49713 2.91315 3.05661 3.23335 3.34320 3.74665 3.80550 4.03671 4.14743 4.31854 4.49132 4.52984 4.67960 4.70988 4.80381 4.85303 4.95909 5.02936 5.15705 5.15828 5.19697 5.68009 5.90527 5.95137 6.31877 6.68365 6.89437 7.48658 9.00456 Molecular weight = 257.09amu Principal moments of inertia in cm(-1) A = 0.039970 B = 0.004316 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.361804 B = 6485.343718 C = 6750.371134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.225 4.225 3 C -0.004 4.004 4 C -0.115 4.115 5 C -0.604 4.604 6 S 2.614 3.386 7 O -1.000 7.000 8 O -0.994 6.994 9 N -1.041 6.041 10 C 0.132 3.868 11 C 0.015 3.985 12 C -0.524 4.524 13 H 0.074 0.926 14 C 0.013 3.987 15 N -0.925 5.925 16 Si 0.960 3.040 17 H -0.280 1.280 18 H -0.290 1.290 19 H -0.259 1.259 20 C 0.138 3.862 21 H 0.244 0.756 22 H 0.108 0.892 23 H 0.106 0.894 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.162 0.838 27 H 0.156 0.844 28 H 0.068 0.932 29 H 0.102 0.898 30 H 0.024 0.976 31 H 0.262 0.738 32 H 0.088 0.912 33 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.804 10.342 5.050 17.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.225 4.225 3 C -0.041 4.041 4 C -0.154 4.154 5 C -0.737 4.737 6 S 2.716 3.284 7 O -0.991 6.991 8 O -0.985 6.985 9 N -0.879 5.879 10 C 0.007 3.993 11 C -0.006 4.006 12 C -0.563 4.563 13 H 0.093 0.907 14 C -0.186 4.186 15 N -0.564 5.564 16 Si 0.785 3.215 17 H -0.206 1.206 18 H -0.217 1.217 19 H -0.183 1.183 20 C 0.012 3.988 21 H 0.260 0.740 22 H 0.127 0.873 23 H 0.124 0.876 24 H 0.096 0.904 25 H 0.099 0.901 26 H 0.180 0.820 27 H 0.174 0.826 28 H 0.087 0.913 29 H 0.120 0.880 30 H 0.042 0.958 31 H 0.071 0.929 32 H 0.106 0.894 33 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -14.436 9.392 4.794 17.877 hybrid contribution 0.777 0.509 -0.333 0.987 sum -13.658 9.901 4.461 17.449 Atomic orbital electron populations 1.25751 0.97005 0.99202 1.00333 1.23670 0.95569 1.01878 1.01376 1.18738 0.84157 0.95806 1.05407 1.21355 0.90389 0.99595 1.04064 1.30500 1.05499 1.23156 1.14585 1.04596 0.72016 0.79105 0.72664 1.93509 1.83778 1.80315 1.41488 1.93501 1.83769 1.68953 1.52270 1.60163 1.20056 1.88565 1.19163 1.22990 0.83564 1.01598 0.91130 1.20516 0.92432 0.95571 0.92131 1.21426 0.97960 1.26082 1.10797 0.90739 1.25851 1.02216 0.95502 0.95081 1.70103 1.35815 1.36227 1.14253 0.85535 0.79611 0.79357 0.76966 1.20630 1.21656 1.18254 1.22985 0.83894 1.00520 0.91380 0.73960 0.87342 0.87625 0.90447 0.90076 0.82006 0.82565 0.91321 0.88013 0.95780 0.92930 0.89359 0.93855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.41 19.25 74.32 1.43 -1.98 16 2 C -0.22 -4.27 13.34 31.13 0.42 -3.85 16 3 C 0.00 -0.06 5.70 28.79 0.16 0.11 16 4 C -0.11 -2.21 5.18 30.59 0.16 -2.05 16 5 C -0.60 -11.87 6.18 71.98 0.44 -11.42 16 6 S 2.61 85.75 5.93 -56.49 -0.34 85.41 16 7 O -1.00 -40.43 18.02 -127.65 -2.30 -42.73 16 8 O -0.99 -37.94 18.02 -127.65 -2.30 -40.24 16 9 N -1.04 -38.31 4.00 -529.18 -2.12 -40.43 16 10 C 0.13 4.88 8.47 86.49 0.73 5.61 16 11 C 0.01 0.71 3.60 -10.88 -0.04 0.67 16 12 C -0.52 -26.04 8.77 25.60 0.22 -25.82 16 13 H 0.07 3.45 7.81 -2.91 -0.02 3.43 16 14 C 0.01 0.67 5.46 84.66 0.46 1.13 16 15 N -0.93 -52.08 13.29 21.45 0.28 -51.80 16 16 Si 0.96 40.65 29.54 68.60 2.03 42.67 16 17 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 18 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 19 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 20 C 0.14 5.86 8.48 86.44 0.73 6.60 16 21 H 0.24 2.16 7.80 -4.43 -0.03 2.12 16 22 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.11 1.33 8.14 -2.39 -0.02 1.32 16 24 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.16 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.16 2.48 8.14 -2.39 -0.02 2.46 16 28 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 29 H 0.10 3.15 8.09 -2.39 -0.02 3.13 16 30 H 0.02 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 32 H 0.09 3.41 8.09 -2.39 -0.02 3.39 16 33 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -69.94 307.94 1.06 -68.88 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: 1.08 Total: 9.25 kcal Atomic # 6 Polarization: -35.74 SS G_CDS: 4.73 Total: -31.01 kcal Atomic # 7 Polarization: -90.40 SS G_CDS: -1.83 Total: -92.23 kcal Atomic # 8 Polarization: -78.37 SS G_CDS: -4.60 Total: -82.97 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.67 kcal Atomic # 16 Polarization: 85.75 SS G_CDS: -0.34 Total: 85.41 kcal Total: -69.94 1.06 -68.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849432867.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.994 kcal (2) G-P(sol) polarization free energy of solvation -69.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds