Wall clock time and date at job start Mon Mar 30 2020 04:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46903 * 111.00288 * 2 1 4 4 C 1.50698 * 109.46692 * 293.94994 * 3 2 1 5 5 H 1.08000 * 120.00276 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00069 * 179.72064 * 4 3 2 7 7 N 1.31519 * 119.99495 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 120.00127 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47254 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46807 * 120.00738 * 8 6 4 11 11 H 1.48501 * 109.46993 * 240.00059 * 8 6 4 12 12 C 1.38405 * 110.99896 * 123.95032 * 2 1 3 13 13 N 1.32174 * 119.81579 * 294.70491 * 12 2 1 14 14 C 1.32365 * 122.17875 * 179.97438 * 13 12 2 15 15 C 1.38385 * 120.63449 * 359.97438 * 14 13 12 16 16 C 1.38496 * 119.66299 * 0.02562 * 15 14 13 17 17 C 1.39891 * 118.56603 * 359.71405 * 16 15 14 18 18 C 1.43199 * 120.70692 * 180.27980 * 17 16 15 19 19 N 3.55088 * 117.27653 * 209.35642 * 2 1 3 20 20 C 1.51288 * 109.91233 * 180.02562 * 15 14 13 21 21 C 1.54337 * 105.13198 * 17.19132 * 20 15 14 22 22 C 1.51561 * 129.84020 * 179.97438 * 14 13 12 23 23 H 1.08998 * 109.47166 * 66.16038 * 1 2 3 24 24 H 1.08995 * 109.47499 * 186.16012 * 1 2 3 25 25 H 1.09003 * 109.46964 * 306.16523 * 1 2 3 26 26 H 1.08994 * 109.47106 * 173.95385 * 3 2 1 27 27 H 1.08996 * 109.46904 * 53.95039 * 3 2 1 28 28 H 0.96996 * 119.99549 * 179.97438 * 7 6 4 29 29 H 1.07997 * 120.71705 * 179.97438 * 16 15 14 30 30 H 1.09005 * 110.31184 * 136.10708 * 20 15 14 31 31 H 1.09002 * 110.31004 * 258.17621 * 20 15 14 32 32 H 1.09001 * 110.82048 * 91.82705 * 21 20 15 33 33 H 1.09000 * 110.82071 * 215.17328 * 21 20 15 34 34 H 1.08995 * 110.28881 * 281.66027 * 22 14 13 35 35 H 1.08996 * 110.29313 * 43.79142 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 -1.2985 5 1 1.0740 1.5114 -2.0485 6 6 2.0224 3.3511 -1.5265 7 7 2.7032 4.0052 -0.6109 8 14 1.5775 4.1887 -3.1357 9 1 0.8147 3.2444 -3.9910 10 1 0.7449 5.3864 -2.8567 11 1 2.8188 4.6017 -3.8385 12 6 1.9649 -0.7216 1.0719 13 7 1.7530 -0.2960 2.3051 14 6 2.2052 -0.9492 3.3638 15 6 2.9272 -2.1203 3.2144 16 6 3.1793 -2.6129 1.9448 17 6 2.6855 -1.9064 0.8430 18 6 2.9141 -2.3775 -0.4899 19 7 3.0963 -2.7508 -1.5472 20 6 3.3208 -2.6597 4.5720 21 6 2.3962 -1.9385 5.5755 22 6 2.0667 -0.6240 4.8376 23 1 -0.3633 0.4154 -0.9400 24 1 -0.3634 -1.0217 0.1103 25 1 -0.3633 0.6065 0.8297 26 1 3.0797 1.3443 0.1082 27 1 1.5611 1.9273 0.8309 28 1 2.9747 4.9224 -0.7714 29 1 3.7413 -3.5250 1.8085 30 1 3.1572 -3.7366 4.6132 31 1 4.3647 -2.4279 4.7830 32 1 1.4913 -2.5191 5.7549 33 1 2.9193 -1.7406 6.5111 34 1 2.7741 0.1554 5.1207 35 1 1.0472 -0.3099 5.0612 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044419780.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:30 Heat of formation + Delta-G solvation = 71.529688 kcal Electronic energy + Delta-G solvation = -18386.541908 eV Core-core repulsion = 15577.623227 eV Total energy + Delta-G solvation = -2808.918681 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.79388 -37.71966 -36.14371 -34.81106 -32.67386 -32.42056 -29.21063 -27.88623 -27.24350 -25.23860 -23.67301 -22.59875 -20.96224 -20.55538 -18.17154 -16.84599 -16.51721 -16.00512 -15.56893 -14.89184 -14.15206 -14.03831 -13.50022 -13.23529 -13.16387 -13.03750 -12.83939 -12.58681 -12.38597 -12.21590 -12.00088 -11.80035 -11.38636 -11.35107 -11.03546 -10.99525 -10.74095 -10.58512 -10.05415 -9.60301 -9.45969 -9.14088 -8.49985 -8.37477 -7.74313 -6.05711 -4.07778 0.79283 1.29527 3.09996 3.26418 3.31025 3.38249 3.43628 3.81154 4.05443 4.21760 4.33168 4.49326 4.55178 4.76974 4.84215 4.99674 5.19571 5.30081 5.40525 5.57469 5.58095 5.66151 5.74385 5.86154 5.93981 5.98849 6.03750 6.12134 6.31960 6.49426 6.62838 7.16132 7.29975 7.72763 7.85084 7.89595 8.04595 8.17020 8.43727 8.98322 9.56049 11.05251 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.023967 B = 0.005783 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.007870 B = 4841.028261 C = 5546.630710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.500 5.500 3 C 0.202 3.798 4 C -0.511 4.511 5 H 0.066 0.934 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.900 3.100 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.375 3.625 13 N -0.501 5.501 14 C 0.160 3.840 15 C -0.177 4.177 16 C -0.015 4.015 17 C -0.069 4.069 18 C 0.281 3.719 19 N -0.419 5.419 20 C -0.072 4.072 21 C -0.118 4.118 22 C -0.075 4.075 23 H 0.082 0.918 24 H 0.044 0.956 25 H 0.036 0.964 26 H 0.028 0.972 27 H 0.015 0.985 28 H 0.262 0.738 29 H 0.140 0.860 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.469 -12.623 13.788 18.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.224 5.224 3 C 0.079 3.921 4 C -0.550 4.550 5 H 0.084 0.916 6 C -0.144 4.144 7 N -0.535 5.535 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.144 3.856 13 N -0.213 5.213 14 C 0.019 3.981 15 C -0.179 4.179 16 C -0.043 4.043 17 C -0.076 4.076 18 C -0.034 4.034 19 N -0.095 5.095 20 C -0.109 4.109 21 C -0.156 4.156 22 C -0.113 4.113 23 H 0.101 0.899 24 H 0.063 0.937 25 H 0.055 0.945 26 H 0.046 0.954 27 H 0.033 0.967 28 H 0.071 0.929 29 H 0.158 0.842 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.111 0.889 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.442 -12.451 11.821 17.174 hybrid contribution 0.041 0.537 -0.003 0.539 sum -0.400 -11.913 11.818 16.786 Atomic orbital electron populations 1.22177 0.85574 0.99488 1.02664 1.60423 1.09119 1.20104 1.32780 1.19830 0.95320 0.79090 0.97834 1.21136 1.35454 0.96939 1.01465 0.91630 1.24965 0.95154 0.97193 0.97078 1.69978 1.38268 1.11318 1.33892 0.86407 0.78207 0.79301 0.83340 1.19581 1.20986 1.20959 1.20163 0.89232 0.88947 0.87291 1.67326 1.21922 1.33370 0.98638 1.22019 0.91019 0.90215 0.94850 1.21222 1.02739 0.98858 0.95078 1.20890 0.95358 0.98344 0.89706 1.16611 1.06149 0.97814 0.87066 1.24881 0.93503 0.92871 0.92192 1.81135 1.08632 1.09599 1.10127 1.20895 1.00125 1.00253 0.89657 1.22296 0.99860 0.95473 0.97956 1.21085 1.03768 0.98658 0.87813 0.89940 0.93701 0.94539 0.95411 0.96720 0.92866 0.84184 0.90469 0.89909 0.90680 0.89974 0.88860 0.89487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.96 9.14 60.06 0.55 1.50 16 2 N -0.50 -11.28 4.10 -182.23 -0.75 -12.03 16 3 C 0.20 5.40 4.44 -4.98 -0.02 5.38 16 4 C -0.51 -14.55 8.59 -34.44 -0.30 -14.84 16 5 H 0.07 1.85 7.10 -52.49 -0.37 1.48 16 6 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 7 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 8 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 9 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 C 0.38 7.40 5.24 -155.25 -0.81 6.59 16 13 N -0.50 -9.36 9.81 -8.07 -0.08 -9.44 16 14 C 0.16 2.31 7.32 -81.88 -0.60 1.71 16 15 C -0.18 -2.14 6.14 -104.18 -0.64 -2.78 16 16 C -0.01 -0.19 9.90 -38.87 -0.38 -0.58 16 17 C -0.07 -1.17 5.77 -106.48 -0.61 -1.79 16 18 C 0.28 5.22 14.86 -22.47 -0.33 4.88 16 19 N -0.42 -8.40 18.54 41.84 0.78 -7.63 16 20 C -0.07 -0.57 6.77 -26.89 -0.18 -0.75 16 21 C -0.12 -0.84 7.08 -25.35 -0.18 -1.02 16 22 C -0.08 -0.78 6.77 -26.78 -0.18 -0.96 16 23 H 0.08 1.69 7.04 -51.93 -0.37 1.32 16 24 H 0.04 0.78 8.05 -51.93 -0.42 0.36 16 25 H 0.04 0.73 8.06 -51.93 -0.42 0.31 16 26 H 0.03 0.81 8.05 -51.93 -0.42 0.39 16 27 H 0.01 0.42 7.99 -51.93 -0.42 0.01 16 28 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 29 H 0.14 1.35 8.06 -52.49 -0.42 0.92 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 305.57 15.07 4.60 4.60 Total: -1.00 -32.63 305.57 -8.03 -40.66 By element: Atomic # 1 Polarization: -1.39 SS G_CDS: -4.50 Total: -5.90 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -3.79 Total: -1.09 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: 0.69 Total: -55.19 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.63 -8.03 -40.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044419780.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.188 kcal (2) G-P(sol) polarization free energy of solvation -32.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds