Wall clock time and date at job start Mon Mar 30 2020 04:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46903 * 111.00288 * 2 1 4 4 C 1.50698 * 109.46692 * 293.94994 * 3 2 1 5 5 H 1.08000 * 120.00276 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00069 * 179.72064 * 4 3 2 7 7 N 1.31519 * 119.99495 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 120.00127 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47254 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46807 * 120.00738 * 8 6 4 11 11 H 1.48501 * 109.46993 * 240.00059 * 8 6 4 12 12 C 1.38405 * 110.99896 * 123.95032 * 2 1 3 13 13 N 1.32174 * 119.81579 * 294.70491 * 12 2 1 14 14 C 1.32365 * 122.17875 * 179.97438 * 13 12 2 15 15 C 1.38385 * 120.63449 * 359.97438 * 14 13 12 16 16 C 1.38496 * 119.66299 * 0.02562 * 15 14 13 17 17 C 1.39891 * 118.56603 * 359.71405 * 16 15 14 18 18 C 1.43199 * 120.70692 * 180.27980 * 17 16 15 19 19 N 3.55088 * 117.27653 * 209.35642 * 2 1 3 20 20 C 1.51288 * 109.91233 * 180.02562 * 15 14 13 21 21 C 1.54337 * 105.13198 * 17.19132 * 20 15 14 22 22 C 1.51561 * 129.84020 * 179.97438 * 14 13 12 23 23 H 1.08998 * 109.47166 * 66.16038 * 1 2 3 24 24 H 1.08995 * 109.47499 * 186.16012 * 1 2 3 25 25 H 1.09003 * 109.46964 * 306.16523 * 1 2 3 26 26 H 1.08994 * 109.47106 * 173.95385 * 3 2 1 27 27 H 1.08996 * 109.46904 * 53.95039 * 3 2 1 28 28 H 0.96996 * 119.99549 * 179.97438 * 7 6 4 29 29 H 1.07997 * 120.71705 * 179.97438 * 16 15 14 30 30 H 1.09005 * 110.31184 * 136.10708 * 20 15 14 31 31 H 1.09002 * 110.31004 * 258.17621 * 20 15 14 32 32 H 1.09001 * 110.82048 * 91.82705 * 21 20 15 33 33 H 1.09000 * 110.82071 * 215.17328 * 21 20 15 34 34 H 1.08995 * 110.28881 * 281.66027 * 22 14 13 35 35 H 1.08996 * 110.29313 * 43.79142 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 -1.2985 5 1 1.0740 1.5114 -2.0485 6 6 2.0224 3.3511 -1.5265 7 7 2.7032 4.0052 -0.6109 8 14 1.5775 4.1887 -3.1357 9 1 0.8147 3.2444 -3.9910 10 1 0.7449 5.3864 -2.8567 11 1 2.8188 4.6017 -3.8385 12 6 1.9649 -0.7216 1.0719 13 7 1.7530 -0.2960 2.3051 14 6 2.2052 -0.9492 3.3638 15 6 2.9272 -2.1203 3.2144 16 6 3.1793 -2.6129 1.9448 17 6 2.6855 -1.9064 0.8430 18 6 2.9141 -2.3775 -0.4899 19 7 3.0963 -2.7508 -1.5472 20 6 3.3208 -2.6597 4.5720 21 6 2.3962 -1.9385 5.5755 22 6 2.0667 -0.6240 4.8376 23 1 -0.3633 0.4154 -0.9400 24 1 -0.3634 -1.0217 0.1103 25 1 -0.3633 0.6065 0.8297 26 1 3.0797 1.3443 0.1082 27 1 1.5611 1.9273 0.8309 28 1 2.9747 4.9224 -0.7714 29 1 3.7413 -3.5250 1.8085 30 1 3.1572 -3.7366 4.6132 31 1 4.3647 -2.4279 4.7830 32 1 1.4913 -2.5191 5.7549 33 1 2.9193 -1.7406 6.5111 34 1 2.7741 0.1554 5.1207 35 1 1.0472 -0.3099 5.0612 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044419780.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:30 Heat of formation + Delta-G solvation = 51.069877 kcal Electronic energy + Delta-G solvation = -18387.429112 eV Core-core repulsion = 15577.623227 eV Total energy + Delta-G solvation = -2809.805885 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.99390 -39.02608 -37.66032 -36.12273 -34.60801 -33.78851 -30.44894 -29.35526 -28.69416 -26.84707 -24.92571 -24.20213 -22.21681 -21.67816 -19.45069 -18.59395 -18.10075 -17.32313 -16.80015 -16.54125 -15.77864 -15.25779 -14.94312 -14.77629 -14.73004 -14.12577 -13.95470 -13.88590 -13.79459 -13.60816 -13.37551 -13.19404 -12.93445 -12.69284 -12.66652 -12.47588 -12.13551 -11.99865 -11.66228 -11.47490 -10.77221 -10.69637 -10.52511 -9.57756 -9.50495 -8.26817 -6.37939 -0.45976 0.14381 1.37670 1.38644 1.52501 1.64737 1.92504 2.34882 2.63422 2.75301 2.86023 3.06643 3.22120 3.61737 3.92506 3.98411 4.03834 4.27326 4.34885 4.43230 4.60085 4.72916 4.85637 4.89186 4.92058 4.97079 4.99564 5.10525 5.13728 5.17557 5.28951 5.43606 5.48296 5.60807 5.94271 5.96183 6.43070 6.56960 6.74660 6.91126 7.31383 8.85145 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.023967 B = 0.005783 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.007870 B = 4841.028261 C = 5546.630710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.510 5.510 3 C 0.228 3.772 4 C -0.529 4.529 5 H 0.063 0.937 6 C 0.006 3.994 7 N -0.931 5.931 8 Si 0.972 3.028 9 H -0.265 1.265 10 H -0.273 1.273 11 H -0.278 1.278 12 C 0.337 3.663 13 N -0.537 5.537 14 C 0.139 3.861 15 C -0.157 4.157 16 C -0.003 4.003 17 C -0.082 4.082 18 C 0.295 3.705 19 N -0.454 5.454 20 C -0.068 4.068 21 C -0.106 4.106 22 C -0.079 4.079 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.027 0.973 26 H -0.008 1.008 27 H -0.017 1.017 28 H 0.266 0.734 29 H 0.182 0.818 30 H 0.106 0.894 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.093 -14.418 15.465 21.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.233 5.233 3 C 0.104 3.896 4 C -0.568 4.568 5 H 0.082 0.918 6 C -0.193 4.193 7 N -0.571 5.571 8 Si 0.796 3.204 9 H -0.189 1.189 10 H -0.198 1.198 11 H -0.204 1.204 12 C 0.106 3.894 13 N -0.249 5.249 14 C -0.001 4.001 15 C -0.159 4.159 16 C -0.030 4.030 17 C -0.089 4.089 18 C -0.020 4.020 19 N -0.130 5.130 20 C -0.105 4.105 21 C -0.144 4.144 22 C -0.117 4.117 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.045 0.955 26 H 0.010 0.990 27 H 0.001 0.999 28 H 0.075 0.925 29 H 0.199 0.801 30 H 0.124 0.876 31 H 0.120 0.880 32 H 0.104 0.896 33 H 0.128 0.872 34 H 0.114 0.886 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.073 -14.275 13.518 19.660 hybrid contribution -0.055 1.042 -0.325 1.093 sum -0.128 -13.233 13.193 18.686 Atomic orbital electron populations 1.22119 0.84699 1.00826 1.01595 1.60214 1.10143 1.17502 1.35450 1.19264 0.92834 0.81500 0.96035 1.21428 1.35649 0.97616 1.02064 0.91834 1.25909 0.94760 0.97815 1.00817 1.70102 1.39142 1.11835 1.36033 0.85293 0.78157 0.78280 0.78652 1.18873 1.19813 1.20362 1.20033 0.91836 0.90256 0.87272 1.67169 1.23522 1.34942 0.99279 1.22873 0.90742 0.90925 0.95606 1.21818 0.99960 0.97270 0.96810 1.21305 0.94189 0.98880 0.88631 1.16699 1.06901 0.97789 0.87535 1.25172 0.92516 0.91969 0.92365 1.81127 1.10045 1.10986 1.10881 1.21095 1.01179 1.01849 0.86426 1.22345 1.00552 0.93116 0.98339 1.21309 1.03964 1.00984 0.85415 0.91008 0.91036 0.95478 0.99009 0.99899 0.92470 0.80113 0.87567 0.88017 0.89555 0.87181 0.88565 0.89612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.27 9.14 127.69 1.17 3.44 16 2 N -0.51 -24.15 4.10 -730.45 -3.00 -27.15 16 3 C 0.23 12.97 4.44 85.56 0.38 13.35 16 4 C -0.53 -31.34 8.59 25.60 0.22 -31.12 16 5 H 0.06 3.70 7.10 -2.91 -0.02 3.68 16 6 C 0.01 0.33 5.46 84.65 0.46 0.79 16 7 N -0.93 -57.53 13.29 21.45 0.28 -57.25 16 8 Si 0.97 45.70 29.54 68.60 2.03 47.72 16 9 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 12 C 0.34 13.75 5.24 133.68 0.70 14.45 16 13 N -0.54 -20.67 9.81 -179.46 -1.76 -22.43 16 14 C 0.14 3.87 7.32 42.79 0.31 4.19 16 15 C -0.16 -3.31 6.14 -19.58 -0.12 -3.43 16 16 C 0.00 -0.06 9.90 22.73 0.22 0.16 16 17 C -0.08 -2.77 5.77 -21.07 -0.12 -2.89 16 18 C 0.29 11.01 14.86 88.33 1.31 12.32 16 19 N -0.45 -18.41 18.54 19.00 0.35 -18.06 16 20 C -0.07 -0.73 6.77 30.49 0.21 -0.53 16 21 C -0.11 -1.03 7.08 31.49 0.22 -0.81 16 22 C -0.08 -1.46 6.77 30.57 0.21 -1.26 16 23 H 0.07 3.08 7.04 -2.39 -0.02 3.06 16 24 H 0.07 2.54 8.05 -2.39 -0.02 2.53 16 25 H 0.03 1.15 8.06 -2.39 -0.02 1.13 16 26 H -0.01 -0.51 8.05 -2.39 -0.02 -0.53 16 27 H -0.02 -1.04 7.99 -2.39 -0.02 -1.05 16 28 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 29 H 0.18 2.69 8.06 -2.91 -0.02 2.67 16 30 H 0.11 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -75.61 305.57 4.18 -71.43 By element: Atomic # 1 Polarization: -4.04 SS G_CDS: 1.10 Total: -2.94 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: 5.17 Total: 8.67 kcal Atomic # 7 Polarization: -120.77 SS G_CDS: -4.12 Total: -124.89 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.72 kcal Total: -75.61 4.18 -71.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044419780.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.501 kcal (2) G-P(sol) polarization free energy of solvation -75.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds