Wall clock time and date at job start Mon Mar 30 2020 04:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99717 * 2 1 4 4 H 1.48499 * 109.46967 * 269.99384 * 3 2 1 5 5 H 1.48494 * 109.47431 * 29.99872 * 3 2 1 6 6 H 1.48504 * 109.46857 * 149.99870 * 3 2 1 7 7 C 1.37875 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99941 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99857 * 359.72866 * 7 2 1 10 10 N 1.46901 * 109.47025 * 174.99821 * 9 7 2 11 11 C 1.46846 * 110.99940 * 300.69388 * 10 9 7 12 12 C 1.53043 * 109.52705 * 185.84048 * 11 10 9 13 13 C 1.53119 * 109.27293 * 300.82276 * 12 11 10 14 14 O 1.42900 * 109.56966 * 177.58994 * 13 12 11 15 15 C 1.42901 * 114.00516 * 90.28388 * 14 13 12 16 16 C 1.52997 * 109.47716 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.47239 * 180.02562 * 16 15 14 18 18 O 1.20823 * 119.99470 * 359.97438 * 17 16 15 19 19 O 1.34222 * 119.99685 * 180.02562 * 17 16 15 20 20 C 1.53117 * 109.16405 * 57.65542 * 13 12 11 21 21 C 1.46846 * 111.00467 * 64.90491 * 10 9 7 22 22 H 0.97005 * 120.00330 * 0.02562 * 1 2 3 23 23 H 1.09006 * 109.47380 * 294.99570 * 9 7 2 24 24 H 1.09000 * 109.47417 * 54.99673 * 9 7 2 25 25 H 1.08998 * 109.46431 * 305.85781 * 11 10 9 26 26 H 1.09001 * 109.46282 * 65.82305 * 11 10 9 27 27 H 1.08994 * 109.50185 * 180.87989 * 12 11 10 28 28 H 1.08996 * 109.49882 * 60.75716 * 12 11 10 29 29 H 1.08997 * 109.52509 * 297.74499 * 13 12 11 30 30 H 1.08999 * 109.46592 * 300.00522 * 15 14 13 31 31 H 1.09004 * 109.46716 * 59.99203 * 15 14 13 32 32 H 1.09002 * 109.47017 * 300.00079 * 16 15 14 33 33 H 1.09004 * 109.46922 * 59.99953 * 16 15 14 34 34 H 0.96702 * 117.00020 * 179.97438 * 19 17 16 35 35 H 1.09002 * 109.50148 * 182.40235 * 20 13 12 36 36 H 1.08998 * 109.50646 * 62.28511 * 20 13 12 37 37 H 1.09006 * 109.45826 * 294.17926 * 21 10 9 38 38 H 1.09003 * 109.46067 * 54.15415 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0073 10 7 2.2006 -3.6133 -0.1142 11 6 2.9779 -3.5093 -1.3557 12 6 3.8489 -4.7570 -1.5200 13 6 4.7877 -4.8800 -0.3166 14 8 5.5648 -6.0732 -0.4359 15 6 6.8024 -5.8943 -1.1276 16 6 7.5469 -7.2292 -1.1948 17 6 8.8523 -7.0402 -1.9238 18 8 9.1557 -5.9498 -2.3465 19 8 9.6773 -8.0835 -2.1041 20 6 3.9548 -4.9380 0.9669 21 6 3.0808 -3.6851 1.0590 22 1 -0.4851 0.8401 -0.0004 23 1 0.6971 -2.5940 0.9413 24 1 0.5554 -2.5214 -0.8316 25 1 2.2984 -3.4265 -2.2039 26 1 3.6142 -2.6253 -1.3128 27 1 4.4373 -4.6722 -2.4335 28 1 3.2125 -5.6400 -1.5768 29 1 5.4507 -4.0155 -0.2819 30 1 6.6053 -5.5364 -2.1381 31 1 7.4132 -5.1643 -0.5964 32 1 7.7440 -7.5866 -0.1841 33 1 6.9362 -7.9595 -1.7258 34 1 10.5030 -7.9135 -2.5778 35 1 4.6190 -4.9826 1.8300 36 1 3.3201 -5.8239 0.9492 37 1 3.7166 -2.8002 1.0906 38 1 2.4759 -3.7302 1.9646 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082666401.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:02 Heat of formation + Delta-G solvation = -172.383346 kcal Electronic energy + Delta-G solvation = -19257.390760 eV Core-core repulsion = 16098.293545 eV Total energy + Delta-G solvation = -3159.097215 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.146 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.30956 -40.31423 -38.35575 -37.14746 -35.15598 -33.60222 -32.08423 -31.74107 -28.44688 -26.00084 -25.09039 -23.93629 -22.85738 -21.97877 -20.74338 -19.19683 -18.51858 -18.09523 -17.41218 -17.04377 -16.66282 -16.20304 -16.09024 -15.81589 -15.46150 -14.85024 -14.55245 -14.21732 -13.97565 -13.83079 -13.40807 -13.15007 -12.90723 -12.79597 -12.65123 -12.56643 -12.31515 -12.18737 -12.05619 -11.90690 -11.73054 -11.69698 -11.51955 -11.30154 -10.61980 -10.41550 -9.03706 -8.16347 -6.36732 1.16944 1.36018 1.36431 1.46883 1.83693 2.35972 2.90999 3.08018 3.36961 3.72905 3.87784 3.91280 4.01811 4.20284 4.34175 4.39612 4.49598 4.55295 4.66733 4.69783 4.76441 4.84279 4.90336 4.91666 5.04305 5.12127 5.25064 5.31468 5.32058 5.37560 5.59905 5.73175 6.04097 6.19764 6.24832 6.54615 6.84554 6.96601 7.35050 8.85780 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.032163 B = 0.003840 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.343849 B = 7290.191789 C = 7792.446727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.012 3.988 3 Si 0.957 3.043 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.558 4.558 8 H 0.056 0.944 9 C 0.199 3.801 10 N -0.543 5.543 11 C 0.069 3.931 12 C -0.125 4.125 13 C 0.098 3.902 14 O -0.382 6.382 15 C 0.068 3.932 16 C -0.107 4.107 17 C 0.493 3.507 18 O -0.557 6.557 19 O -0.509 6.509 20 C -0.100 4.100 21 C 0.065 3.935 22 H 0.266 0.734 23 H 0.005 0.995 24 H 0.007 0.993 25 H 0.058 0.942 26 H 0.021 0.979 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.430 0.570 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.020 0.980 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.951 -15.595 -2.120 23.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.188 4.188 3 Si 0.782 3.218 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.597 4.597 8 H 0.074 0.926 9 C 0.073 3.927 10 N -0.267 5.267 11 C -0.060 4.060 12 C -0.164 4.164 13 C 0.040 3.960 14 O -0.301 6.301 15 C -0.009 4.009 16 C -0.144 4.144 17 C 0.337 3.663 18 O -0.448 6.448 19 O -0.322 6.322 20 C -0.137 4.137 21 C -0.063 4.063 22 H 0.075 0.925 23 H 0.024 0.976 24 H 0.025 0.975 25 H 0.077 0.923 26 H 0.039 0.961 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.152 0.848 33 H 0.151 0.849 34 H 0.292 0.708 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.039 0.961 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 16.194 -15.900 -1.968 22.780 hybrid contribution 0.995 2.437 -0.489 2.677 sum 17.190 -13.463 -2.457 21.972 Atomic orbital electron populations 1.70063 1.07569 1.27921 1.51007 1.25818 0.95611 1.02842 0.94488 0.85576 0.78691 0.79153 0.78407 1.19947 1.20530 1.19239 1.21989 0.93380 0.93008 1.51353 0.92555 1.19412 0.91270 0.86674 0.95393 1.62408 1.17892 1.44081 1.02311 1.21796 0.95414 0.96065 0.92733 1.22023 0.97757 0.98243 0.98329 1.22069 0.91683 0.86663 0.95556 1.87796 1.31691 1.33298 1.77355 1.22222 0.85173 0.96611 0.96908 1.21085 0.89976 0.99367 1.04012 1.23328 0.85969 0.81107 0.75875 1.90762 1.76097 1.28526 1.49442 1.84478 1.35149 1.40008 1.72614 1.21583 0.97496 0.98107 0.96562 1.21875 0.94498 0.96160 0.93774 0.92549 0.97638 0.97471 0.92330 0.96105 0.90681 0.90495 0.92719 0.93033 0.93008 0.84825 0.84919 0.70795 0.89629 0.90389 0.96133 0.91460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.38 13.29 21.45 0.28 -55.10 16 2 C 0.01 0.67 5.46 84.65 0.46 1.14 16 3 Si 0.96 44.04 29.54 68.60 2.03 46.06 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.56 -31.10 7.72 25.60 0.20 -30.91 16 8 H 0.06 3.09 5.86 -2.91 -0.02 3.07 16 9 C 0.20 10.60 5.12 85.56 0.44 11.04 16 10 N -0.54 -23.59 4.86 -900.92 -4.38 -27.97 16 11 C 0.07 2.69 5.03 86.33 0.43 3.13 16 12 C -0.13 -3.83 5.72 30.65 0.18 -3.65 16 13 C 0.10 2.79 2.68 30.67 0.08 2.87 16 14 O -0.38 -9.41 10.00 -148.98 -1.49 -10.89 16 15 C 0.07 1.41 5.04 71.98 0.36 1.77 16 16 C -0.11 -1.50 6.18 29.85 0.18 -1.32 16 17 C 0.49 7.99 8.33 71.24 0.59 8.58 16 18 O -0.56 -13.50 16.74 21.97 0.37 -13.14 16 19 O -0.51 -5.33 13.42 -51.34 -0.69 -6.02 16 20 C -0.10 -2.94 5.75 30.64 0.18 -2.77 16 21 C 0.07 2.49 5.12 86.32 0.44 2.93 16 22 H 0.27 14.93 8.31 -92.70 -0.77 14.16 16 23 H 0.01 0.31 8.08 -2.38 -0.02 0.29 16 24 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 25 H 0.06 2.38 8.12 -2.39 -0.02 2.36 16 26 H 0.02 0.89 6.73 -2.39 -0.02 0.87 16 27 H 0.07 2.03 7.96 -2.39 -0.02 2.01 16 28 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.05 1.60 7.79 -2.39 -0.02 1.58 16 30 H 0.05 1.15 7.92 -2.39 -0.02 1.13 16 31 H 0.05 1.14 8.04 -2.38 -0.02 1.12 16 32 H 0.13 1.41 8.14 -2.39 -0.02 1.40 16 33 H 0.13 1.45 8.14 -2.38 -0.02 1.43 16 34 H 0.43 1.10 9.10 -74.06 -0.67 0.42 16 35 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.02 0.85 6.86 -2.38 -0.02 0.83 16 38 H 0.07 2.58 8.08 -2.39 -0.02 2.56 16 Total: -1.00 -68.59 313.01 0.05 -68.54 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: 0.38 Total: 5.68 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: 3.55 Total: -7.18 kcal Atomic # 7 Polarization: -78.97 SS G_CDS: -4.09 Total: -83.06 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -1.81 Total: -30.05 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -68.59 0.05 -68.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082666401.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.838 kcal (2) G-P(sol) polarization free energy of solvation -68.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds