Wall clock time and date at job start Mon Mar 30 2020 04:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 120.00142 * 2 1 4 4 H 1.48496 * 109.46978 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47398 * 300.00692 * 3 2 1 6 6 H 1.48508 * 109.46911 * 60.00620 * 3 2 1 7 7 C 1.37874 * 119.99822 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00400 * 180.02562 * 7 2 1 9 9 C 1.50710 * 119.99915 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46798 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46907 * 180.02562 * 10 9 7 12 12 N 1.46896 * 109.47295 * 180.02562 * 11 10 9 13 13 C 1.47026 * 111.03194 * 297.75273 * 12 11 10 14 14 C 1.53091 * 109.29035 * 177.65028 * 13 12 11 15 15 O 1.43023 * 109.26153 * 56.82676 * 14 13 12 16 16 C 1.43014 * 113.73734 * 301.32926 * 15 14 13 17 17 C 1.47019 * 111.00067 * 174.09534 * 12 11 10 18 18 H 1.08996 * 109.50511 * 62.41059 * 17 12 11 19 19 C 1.52993 * 109.50513 * 302.32323 * 17 12 11 20 20 C 1.50698 * 109.47177 * 174.25237 * 19 17 12 21 21 O 1.20828 * 119.99737 * 353.78954 * 20 19 17 22 22 O 1.34228 * 120.00442 * 173.51523 * 20 19 17 23 23 H 0.96999 * 119.99882 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.46729 * 60.00314 * 9 7 2 25 25 H 1.08996 * 109.46786 * 300.00666 * 9 7 2 26 26 H 1.09003 * 109.46927 * 60.00323 * 10 9 7 27 27 H 1.08989 * 109.47652 * 300.00488 * 10 9 7 28 28 H 1.09003 * 109.47172 * 60.00340 * 11 10 9 29 29 H 1.09003 * 109.47225 * 300.00477 * 11 10 9 30 30 H 1.08996 * 109.50620 * 57.69213 * 13 12 11 31 31 H 1.09001 * 109.46559 * 297.58488 * 13 12 11 32 32 H 1.09001 * 109.51060 * 296.88884 * 14 13 12 33 33 H 1.09001 * 109.50565 * 176.75617 * 14 13 12 34 34 H 1.09000 * 109.50630 * 298.73535 * 16 15 14 35 35 H 1.08992 * 109.54157 * 178.62738 * 16 15 14 36 36 H 1.09003 * 109.47436 * 54.25256 * 19 17 12 37 37 H 1.09000 * 109.47282 * 294.25226 * 19 17 12 38 38 H 0.96699 * 117.00212 * 180.27661 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2123 6 1 1.8906 2.3963 1.2127 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0025 12 7 2.4346 -6.1037 -0.0031 13 6 3.2632 -6.0889 -1.2176 14 6 4.2803 -7.2311 -1.1498 15 8 3.5871 -8.4708 -0.9824 16 6 2.7717 -8.5205 0.1915 17 6 1.7393 -7.3914 0.1375 18 1 1.0783 -7.5431 -0.7158 19 6 0.9163 -7.3894 1.4272 20 6 0.0946 -8.6505 1.5007 21 8 0.0735 -9.4132 0.5639 22 8 -0.6094 -8.9293 2.6090 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5570 0.8896 26 1 2.8725 -3.6048 0.8878 27 1 2.8712 -3.6040 -0.8921 28 1 0.8531 -5.0442 -0.8923 29 1 0.8538 -5.0455 0.8877 30 1 3.7891 -5.1368 -1.2878 31 1 2.6269 -6.2195 -2.0929 32 1 4.9507 -7.0720 -0.3052 33 1 4.8581 -7.2592 -2.0737 34 1 3.3982 -8.3988 1.0752 35 1 2.2586 -9.4810 0.2387 36 1 0.2542 -6.5235 1.4345 37 1 1.5863 -7.3417 2.2857 38 1 -1.1180 -9.7517 2.6109 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087507601.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:14 Heat of formation + Delta-G solvation = -143.272228 kcal Electronic energy + Delta-G solvation = -19603.163379 eV Core-core repulsion = 16445.328517 eV Total energy + Delta-G solvation = -3157.834862 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.74079 -39.44419 -36.45097 -36.27099 -33.86645 -32.79073 -31.26170 -28.83295 -27.62712 -25.42525 -23.84799 -22.52107 -21.50459 -20.13806 -19.81366 -18.31269 -17.01836 -16.61869 -16.53294 -15.98109 -15.66031 -15.04596 -14.64118 -14.56205 -14.33933 -13.97923 -13.66483 -13.05863 -12.78804 -12.35950 -12.23138 -11.95221 -11.73022 -11.50436 -11.34791 -11.20012 -10.88173 -10.76309 -10.59884 -10.46635 -10.41471 -9.67190 -9.64683 -9.35276 -9.06266 -8.36986 -8.25632 -6.01974 -4.04183 1.99508 2.76279 3.29916 3.37571 3.41630 3.77646 4.00640 4.45021 4.56333 4.61652 4.98364 5.04938 5.16683 5.24498 5.31268 5.34416 5.40438 5.47568 5.64497 5.70326 5.78847 5.82005 5.92000 6.02114 6.22115 6.30027 6.60704 6.66267 6.99043 7.08598 7.19083 7.21187 7.65104 7.68244 7.78778 7.97906 8.40831 9.03127 9.60218 11.09507 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.024409 B = 0.004427 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.839240 B = 6322.915630 C = 7259.374830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.105 4.105 11 C 0.048 3.952 12 N -0.532 5.532 13 C 0.017 3.983 14 C 0.061 3.939 15 O -0.384 6.384 16 C 0.068 3.932 17 C 0.058 3.942 18 H 0.061 0.939 19 C -0.114 4.114 20 C 0.482 3.518 21 O -0.515 6.515 22 O -0.515 6.515 23 H 0.260 0.740 24 H 0.014 0.986 25 H 0.016 0.984 26 H 0.057 0.943 27 H 0.048 0.952 28 H 0.032 0.968 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.042 0.958 32 H 0.059 0.941 33 H 0.096 0.904 34 H 0.056 0.944 35 H 0.102 0.898 36 H 0.120 0.880 37 H 0.116 0.884 38 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.098 -17.455 2.785 17.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.143 4.143 11 C -0.079 4.079 12 N -0.257 5.257 13 C -0.111 4.111 14 C -0.016 4.016 15 O -0.302 6.302 16 C -0.009 4.009 17 C -0.051 4.051 18 H 0.079 0.921 19 C -0.152 4.152 20 C 0.324 3.676 21 O -0.403 6.403 22 O -0.327 6.327 23 H 0.069 0.931 24 H 0.032 0.968 25 H 0.034 0.966 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.050 0.950 29 H 0.093 0.907 30 H 0.116 0.884 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.115 0.885 34 H 0.074 0.926 35 H 0.120 0.880 36 H 0.138 0.862 37 H 0.134 0.866 38 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 3.507 -17.278 2.794 17.850 hybrid contribution -0.644 0.667 -0.499 1.053 sum 2.863 -16.611 2.295 17.011 Atomic orbital electron populations 1.69975 1.06073 1.26492 1.51036 1.25026 0.94836 0.99282 0.95340 0.86545 0.80139 0.83805 0.77571 1.19716 1.21055 1.21006 1.21272 0.93071 0.90982 1.50336 0.92613 1.19081 0.94018 0.91396 0.97138 1.21675 0.99230 0.92491 1.00908 1.22463 0.94021 0.90855 1.00535 1.62297 1.23901 1.01619 1.37925 1.22835 0.96465 1.00630 0.91138 1.22732 0.93716 0.83074 1.02072 1.87988 1.62201 1.35639 1.44394 1.22798 0.91521 0.98382 0.88216 1.22026 0.95348 0.91562 0.96147 0.92119 1.21446 0.98850 0.93789 1.01074 1.23487 0.77150 0.87717 0.79245 1.90729 1.61898 1.49851 1.37865 1.84556 1.59707 1.46797 1.41652 0.93068 0.96807 0.96564 0.92413 0.93312 0.94976 0.90651 0.88380 0.93961 0.92230 0.88543 0.92579 0.87995 0.86228 0.86574 0.73180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.11 -2.08 4.99 -26.73 -0.13 -2.22 16 11 C 0.05 0.79 4.70 -3.83 -0.02 0.77 16 12 N -0.53 -7.63 4.57 -226.34 -1.03 -8.66 16 13 C 0.02 0.24 5.38 -3.71 -0.02 0.22 16 14 C 0.06 0.73 7.01 37.20 0.26 0.99 16 15 O -0.38 -5.34 10.83 -35.23 -0.38 -5.72 16 16 C 0.07 0.85 6.01 37.21 0.22 1.07 16 17 C 0.06 0.76 1.69 -67.60 -0.11 0.64 16 18 H 0.06 0.90 7.83 -51.93 -0.41 0.49 16 19 C -0.11 -1.24 5.16 -27.89 -0.14 -1.39 16 20 C 0.48 5.21 7.97 36.00 0.29 5.50 16 21 O -0.51 -6.94 15.03 -18.75 -0.28 -7.22 16 22 O -0.52 -4.34 13.42 -39.25 -0.53 -4.86 16 23 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 24 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.05 0.95 6.40 -51.94 -0.33 0.62 16 28 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 1.17 5.83 -51.93 -0.30 0.87 16 30 H 0.10 1.35 6.25 -51.93 -0.32 1.03 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.10 1.28 6.34 -51.93 -0.33 0.95 16 36 H 0.12 1.32 5.94 -51.93 -0.31 1.01 16 37 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.41 1.68 9.10 45.56 0.41 2.09 16 LS Contribution 307.48 15.07 4.63 4.63 Total: -1.00 -32.62 307.48 -7.02 -39.64 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -4.94 Total: -0.95 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -0.21 Total: -7.31 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: -0.30 Total: -34.68 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -1.19 Total: -17.80 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.62 -7.02 -39.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087507601.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.628 kcal (2) G-P(sol) polarization free energy of solvation -32.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds