Wall clock time and date at job start Mon Mar 30 2020 04:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36928 * 119.99989 * 2 1 4 4 H 1.08002 * 120.00334 * 203.31920 * 3 2 1 5 5 C 1.38816 * 120.00046 * 23.32330 * 3 2 1 6 6 N 1.31612 * 120.00066 * 11.63997 * 5 3 2 7 7 Si 1.86806 * 119.99945 * 191.63935 * 5 3 2 8 8 H 1.48499 * 109.47135 * 0.02562 * 7 5 3 9 9 H 1.48497 * 109.46992 * 119.99870 * 7 5 3 10 10 H 1.48499 * 109.47121 * 240.00088 * 7 5 3 11 11 C 1.46505 * 119.99760 * 180.02562 * 2 1 3 12 12 H 1.08999 * 109.53389 * 179.83695 * 11 2 1 13 13 C 1.53175 * 109.53426 * 59.60391 * 11 2 1 14 14 C 1.53085 * 109.11262 * 183.15553 * 13 11 2 15 15 O 1.42851 * 109.44921 * 57.61337 * 14 13 11 16 16 C 1.43264 * 114.02696 * 298.55625 * 15 14 13 17 17 C 1.53198 * 109.02726 * 180.48804 * 16 15 14 18 18 C 1.55084 * 109.00992 * 90.05523 * 17 16 15 19 19 S 1.83970 * 100.86853 * 41.70432 * 18 17 16 20 20 C 1.53940 * 108.66513 * 303.06470 * 16 15 14 21 21 C 1.53132 * 109.53349 * 299.99229 * 11 2 1 22 22 H 1.09004 * 109.46634 * 274.06664 * 1 2 3 23 23 H 1.08998 * 109.47005 * 34.06632 * 1 2 3 24 24 H 1.09000 * 109.47552 * 154.07215 * 1 2 3 25 25 H 0.97006 * 120.00079 * 180.02562 * 6 5 3 26 26 H 1.09000 * 109.53936 * 63.26285 * 13 11 2 27 27 H 1.09000 * 109.52900 * 303.03795 * 13 11 2 28 28 H 1.09008 * 109.47753 * 297.62473 * 14 13 11 29 29 H 1.09002 * 109.48086 * 177.61007 * 14 13 11 30 30 H 1.08999 * 109.59560 * 210.00379 * 17 16 15 31 31 H 1.09004 * 109.59923 * 330.10938 * 17 16 15 32 32 H 1.09006 * 111.13940 * 283.80372 * 18 17 16 33 33 H 1.08998 * 111.14155 * 159.60525 * 18 17 16 34 34 H 1.09004 * 110.32055 * 1.25661 * 20 16 15 35 35 H 1.09002 * 110.31969 * 123.45019 * 20 16 15 36 36 H 1.09008 * 109.52956 * 57.19668 * 21 11 2 37 37 H 1.08993 * 109.59161 * 297.01517 * 21 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1635 1.2241 -0.3702 5 6 1.5407 2.3389 0.4760 6 7 0.4035 2.2590 1.1338 7 14 2.3352 4.0040 0.1828 8 1 3.5984 3.8229 -0.5765 9 1 1.4088 4.8641 -0.5964 10 1 2.6296 4.6486 1.4878 11 6 2.1975 -1.2688 -0.0006 12 1 3.2694 -1.0708 -0.0034 13 6 1.8210 -2.0770 -1.2461 14 6 2.5305 -3.4327 -1.1973 15 8 2.1674 -4.1166 0.0031 16 6 2.5440 -3.4297 1.2026 17 6 2.1134 -4.2648 2.4126 18 6 3.2672 -5.2262 2.7992 19 16 4.7217 -4.1155 2.6118 20 6 4.0638 -3.1867 1.1746 21 6 1.8287 -2.0735 1.2490 22 1 -0.3633 0.0729 1.0251 23 1 -0.3633 0.8513 -0.5756 24 1 -0.3634 -0.9242 -0.4493 25 1 -0.0222 3.0648 1.4661 26 1 2.1312 -1.5353 -2.1397 27 1 0.7422 -2.2310 -1.2681 28 1 3.6095 -3.2791 -1.2158 29 1 2.2335 -4.0296 -2.0597 30 1 1.8905 -3.6053 3.2513 31 1 1.2247 -4.8433 2.1600 32 1 3.3246 -6.0687 2.1099 33 1 3.1647 -5.5694 3.8287 34 1 4.4915 -3.5699 0.2481 35 1 4.2791 -2.1234 1.2803 36 1 0.7504 -2.2310 1.2759 37 1 2.1396 -1.5280 2.1399 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094375426.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:24 Heat of formation + Delta-G solvation = -23.639536 kcal Electronic energy + Delta-G solvation = -18377.138380 eV Core-core repulsion = 15667.244052 eV Total energy + Delta-G solvation = -2709.894328 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.89877 -35.84683 -34.40899 -32.48506 -30.02149 -29.84456 -27.71030 -26.04167 -24.57989 -23.50202 -22.23131 -20.06411 -18.63483 -16.97810 -16.70428 -16.14538 -15.34581 -14.98668 -14.65626 -14.57698 -13.81544 -13.67163 -13.02376 -12.82140 -12.64175 -12.43964 -12.11369 -11.88214 -11.55314 -11.41685 -11.09337 -10.97458 -10.92295 -10.74408 -10.40676 -10.23842 -10.17106 -10.03075 -9.86855 -9.54377 -9.13554 -8.56852 -7.64248 -6.77444 -5.74695 -3.21683 1.90742 2.37002 3.35717 3.43104 3.44828 3.87411 4.43805 4.53143 4.72658 4.93855 5.11684 5.22254 5.30900 5.32821 5.41778 5.44841 5.55849 5.66844 5.70069 5.74843 5.89683 5.94205 6.03384 6.16227 6.24999 6.37461 6.53183 6.73076 6.88015 6.93252 7.36854 7.41746 7.71366 7.78490 8.37577 9.21417 9.84393 10.34132 11.29927 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.027749 B = 0.006223 C = 0.005792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.788613 B = 4498.288948 C = 4833.442003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.594 5.594 3 C -0.257 4.257 4 H 0.068 0.932 5 C 0.003 3.997 6 N -0.906 5.906 7 Si 0.903 3.097 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.178 3.822 12 H 0.062 0.938 13 C -0.169 4.169 14 C 0.060 3.940 15 O -0.376 6.376 16 C 0.117 3.883 17 C -0.112 4.112 18 C -0.065 4.065 19 S -0.304 6.304 20 C -0.093 4.093 21 C -0.147 4.147 22 H 0.028 0.972 23 H 0.042 0.958 24 H -0.001 1.001 25 H 0.252 0.748 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.069 0.931 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.430 -13.537 -0.334 13.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.315 5.315 3 C -0.386 4.386 4 H 0.085 0.915 5 C -0.195 4.195 6 N -0.551 5.551 7 Si 0.734 3.266 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.069 3.931 12 H 0.081 0.919 13 C -0.209 4.209 14 C -0.018 4.018 15 O -0.296 6.296 16 C 0.076 3.924 17 C -0.150 4.150 18 C -0.213 4.213 19 S -0.078 6.078 20 C -0.241 4.241 21 C -0.188 4.188 22 H 0.046 0.954 23 H 0.060 0.940 24 H 0.017 0.983 25 H 0.062 0.938 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.106 0.894 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.123 0.877 34 H 0.115 0.885 35 H 0.130 0.870 36 H 0.088 0.912 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.272 -13.447 0.350 14.113 hybrid contribution -0.576 1.209 -0.775 1.548 sum 3.696 -12.237 -0.425 12.790 Atomic orbital electron populations 1.20758 0.82701 0.95520 0.99188 1.43929 1.01797 1.00038 1.85737 1.19256 0.98505 0.85581 1.35273 0.91467 1.25036 0.97788 0.98553 0.98150 1.70072 1.18707 1.27133 1.39206 0.86199 0.78643 0.84332 0.77470 1.20331 1.21610 1.21677 1.20375 0.95923 0.86272 0.90546 0.91946 1.22754 1.01534 0.95472 1.01155 1.22635 0.98392 0.93945 0.86785 1.87989 1.81269 1.47015 1.13290 1.22320 0.90861 0.93489 0.85730 1.22359 0.98606 0.97492 0.96575 1.24309 0.92968 0.98973 1.05002 1.87718 1.31444 1.44572 1.44067 1.24866 0.97546 1.03623 0.98030 1.22898 1.00837 0.93087 1.01969 0.95362 0.93955 0.98270 0.93787 0.91148 0.91350 0.93290 0.89387 0.88913 0.89068 0.89077 0.87724 0.88492 0.87047 0.91217 0.90619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.97 7.96 59.85 0.48 4.44 16 2 N -0.59 -14.52 2.82 -173.30 -0.49 -15.01 16 3 C -0.26 -6.95 9.59 -15.06 -0.14 -7.09 16 4 H 0.07 1.78 7.82 -52.49 -0.41 1.37 16 5 C 0.00 0.09 5.12 -17.43 -0.09 0.00 16 6 N -0.91 -26.23 10.66 55.49 0.59 -25.64 16 7 Si 0.90 21.74 29.57 -169.99 -5.03 16.71 16 8 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 9 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 C 0.18 3.49 2.39 -67.77 -0.16 3.33 16 12 H 0.06 1.24 6.33 -51.93 -0.33 0.91 16 13 C -0.17 -2.86 5.46 -26.60 -0.15 -3.00 16 14 C 0.06 0.83 6.48 37.20 0.24 1.07 16 15 O -0.38 -5.68 10.15 -35.23 -0.36 -6.04 16 16 C 0.12 1.73 1.01 -89.82 -0.09 1.64 16 17 C -0.11 -1.41 5.50 -25.53 -0.14 -1.55 16 18 C -0.06 -0.73 7.52 38.26 0.29 -0.45 16 19 S -0.30 -4.30 23.22 -107.50 -2.50 -6.79 16 20 C -0.09 -1.34 5.53 37.65 0.21 -1.14 16 21 C -0.15 -2.63 3.87 -26.46 -0.10 -2.74 16 22 H 0.03 0.74 7.40 -51.93 -0.38 0.36 16 23 H 0.04 1.12 7.25 -51.93 -0.38 0.74 16 24 H 0.00 -0.02 6.37 -51.93 -0.33 -0.36 16 25 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 26 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.07 1.21 6.55 -51.93 -0.34 0.87 16 28 H 0.05 0.64 6.05 -51.92 -0.31 0.33 16 29 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.09 1.17 7.85 -51.93 -0.41 0.77 16 31 H 0.09 1.08 8.06 -51.93 -0.42 0.66 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.10 1.33 6.04 -51.93 -0.31 1.01 16 35 H 0.11 1.75 6.48 -51.93 -0.34 1.41 16 36 H 0.07 1.31 7.59 -51.92 -0.39 0.92 16 37 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 LS Contribution 290.97 15.07 4.38 4.38 Total: -1.00 -29.24 290.97 -8.66 -37.89 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -5.60 Total: -0.03 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: 0.34 Total: -5.47 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.10 Total: -40.65 kcal Atomic # 8 Polarization: -5.68 SS G_CDS: -0.36 Total: -6.04 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Atomic # 16 Polarization: -4.30 SS G_CDS: -2.50 Total: -6.79 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.24 -8.66 -37.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094375426.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.253 kcal (2) G-P(sol) polarization free energy of solvation -29.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds