Wall clock time and date at job start Mon Mar 30 2020 04:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36928 * 119.99989 * 2 1 4 4 H 1.08002 * 120.00334 * 203.31920 * 3 2 1 5 5 C 1.38816 * 120.00046 * 23.32330 * 3 2 1 6 6 N 1.31612 * 120.00066 * 11.63997 * 5 3 2 7 7 Si 1.86806 * 119.99945 * 191.63935 * 5 3 2 8 8 H 1.48499 * 109.47135 * 0.02562 * 7 5 3 9 9 H 1.48497 * 109.46992 * 119.99870 * 7 5 3 10 10 H 1.48499 * 109.47121 * 240.00088 * 7 5 3 11 11 C 1.46505 * 119.99760 * 180.02562 * 2 1 3 12 12 H 1.08999 * 109.53389 * 179.83695 * 11 2 1 13 13 C 1.53175 * 109.53426 * 59.60391 * 11 2 1 14 14 C 1.53085 * 109.11262 * 183.15553 * 13 11 2 15 15 O 1.42851 * 109.44921 * 57.61337 * 14 13 11 16 16 C 1.43264 * 114.02696 * 298.55625 * 15 14 13 17 17 C 1.53198 * 109.02726 * 180.48804 * 16 15 14 18 18 C 1.55084 * 109.00992 * 90.05523 * 17 16 15 19 19 S 1.83970 * 100.86853 * 41.70432 * 18 17 16 20 20 C 1.53940 * 108.66513 * 303.06470 * 16 15 14 21 21 C 1.53132 * 109.53349 * 299.99229 * 11 2 1 22 22 H 1.09004 * 109.46634 * 274.06664 * 1 2 3 23 23 H 1.08998 * 109.47005 * 34.06632 * 1 2 3 24 24 H 1.09000 * 109.47552 * 154.07215 * 1 2 3 25 25 H 0.97006 * 120.00079 * 180.02562 * 6 5 3 26 26 H 1.09000 * 109.53936 * 63.26285 * 13 11 2 27 27 H 1.09000 * 109.52900 * 303.03795 * 13 11 2 28 28 H 1.09008 * 109.47753 * 297.62473 * 14 13 11 29 29 H 1.09002 * 109.48086 * 177.61007 * 14 13 11 30 30 H 1.08999 * 109.59560 * 210.00379 * 17 16 15 31 31 H 1.09004 * 109.59923 * 330.10938 * 17 16 15 32 32 H 1.09006 * 111.13940 * 283.80372 * 18 17 16 33 33 H 1.08998 * 111.14155 * 159.60525 * 18 17 16 34 34 H 1.09004 * 110.32055 * 1.25661 * 20 16 15 35 35 H 1.09002 * 110.31969 * 123.45019 * 20 16 15 36 36 H 1.09008 * 109.52956 * 57.19668 * 21 11 2 37 37 H 1.08993 * 109.59161 * 297.01517 * 21 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1635 1.2241 -0.3702 5 6 1.5407 2.3389 0.4760 6 7 0.4035 2.2590 1.1338 7 14 2.3352 4.0040 0.1828 8 1 3.5984 3.8229 -0.5765 9 1 1.4088 4.8641 -0.5964 10 1 2.6296 4.6486 1.4878 11 6 2.1975 -1.2688 -0.0006 12 1 3.2694 -1.0708 -0.0034 13 6 1.8210 -2.0770 -1.2461 14 6 2.5305 -3.4327 -1.1973 15 8 2.1674 -4.1166 0.0031 16 6 2.5440 -3.4297 1.2026 17 6 2.1134 -4.2648 2.4126 18 6 3.2672 -5.2262 2.7992 19 16 4.7217 -4.1155 2.6118 20 6 4.0638 -3.1867 1.1746 21 6 1.8287 -2.0735 1.2490 22 1 -0.3633 0.0729 1.0251 23 1 -0.3633 0.8513 -0.5756 24 1 -0.3634 -0.9242 -0.4493 25 1 -0.0222 3.0648 1.4661 26 1 2.1312 -1.5353 -2.1397 27 1 0.7422 -2.2310 -1.2681 28 1 3.6095 -3.2791 -1.2158 29 1 2.2335 -4.0296 -2.0597 30 1 1.8905 -3.6053 3.2513 31 1 1.2247 -4.8433 2.1600 32 1 3.3246 -6.0687 2.1099 33 1 3.1647 -5.5694 3.8287 34 1 4.4915 -3.5699 0.2481 35 1 4.2791 -2.1234 1.2803 36 1 0.7504 -2.2310 1.2759 37 1 2.1396 -1.5280 2.1399 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094375426.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:24 Heat of formation + Delta-G solvation = -40.638312 kcal Electronic energy + Delta-G solvation = -18377.875502 eV Core-core repulsion = 15667.244052 eV Total energy + Delta-G solvation = -2710.631451 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.19294 -37.59999 -35.53145 -34.28237 -31.75051 -31.03923 -29.02463 -28.06639 -26.05532 -24.79903 -23.78232 -21.45137 -20.03583 -18.87225 -17.92187 -17.46503 -16.88520 -16.53903 -16.05131 -15.75646 -15.31468 -15.09947 -14.82130 -14.18934 -13.97683 -13.84729 -13.71584 -13.05012 -12.87697 -12.83297 -12.81187 -12.50333 -12.41483 -12.35261 -12.13047 -12.02228 -11.92126 -11.69793 -11.07902 -11.01384 -10.67045 -10.40317 -8.79215 -8.74814 -7.84558 -5.33456 0.84323 1.32843 1.43826 1.45226 1.55184 2.47594 2.71810 3.27237 3.39147 3.49212 3.75934 3.82974 3.97448 4.05970 4.17668 4.29422 4.30425 4.41499 4.43288 4.60770 4.66757 4.76327 4.80307 4.84122 4.89240 4.94954 5.02850 5.19692 5.22910 5.35858 5.48287 5.61404 5.69166 6.21087 6.31251 7.13436 7.85465 8.30113 9.18568 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.027749 B = 0.006223 C = 0.005792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.788613 B = 4498.288948 C = 4833.442003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.610 5.610 3 C -0.263 4.263 4 H 0.070 0.930 5 C -0.052 4.052 6 N -0.938 5.938 7 Si 0.966 3.034 8 H -0.266 1.266 9 H -0.291 1.291 10 H -0.293 1.293 11 C 0.170 3.830 12 H 0.058 0.942 13 C -0.160 4.160 14 C 0.063 3.937 15 O -0.376 6.376 16 C 0.125 3.875 17 C -0.112 4.112 18 C -0.047 4.047 19 S -0.335 6.335 20 C -0.088 4.088 21 C -0.136 4.136 22 H 0.001 0.999 23 H 0.014 0.986 24 H 0.028 0.972 25 H 0.248 0.752 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.118 0.882 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.128 0.872 34 H 0.108 0.892 35 H 0.093 0.907 36 H 0.058 0.942 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.260 -15.438 -0.937 16.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.332 5.332 3 C -0.394 4.394 4 H 0.087 0.913 5 C -0.247 4.247 6 N -0.585 5.585 7 Si 0.795 3.205 8 H -0.191 1.191 9 H -0.218 1.218 10 H -0.220 1.220 11 C 0.064 3.936 12 H 0.076 0.924 13 C -0.200 4.200 14 C -0.014 4.014 15 O -0.296 6.296 16 C 0.083 3.917 17 C -0.151 4.151 18 C -0.194 4.194 19 S -0.109 6.109 20 C -0.236 4.236 21 C -0.176 4.176 22 H 0.019 0.981 23 H 0.032 0.968 24 H 0.046 0.954 25 H 0.057 0.943 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.136 0.864 30 H 0.107 0.893 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.147 0.853 34 H 0.126 0.874 35 H 0.111 0.889 36 H 0.077 0.923 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.128 -15.387 -0.266 16.221 hybrid contribution -0.825 1.744 -0.595 2.019 sum 4.303 -13.643 -0.861 14.331 Atomic orbital electron populations 1.20437 0.83069 0.95612 0.97230 1.44154 1.01897 1.01183 1.85948 1.19588 0.98631 0.86856 1.34275 0.91259 1.25782 0.98551 1.01834 0.98540 1.70232 1.20122 1.27530 1.40610 0.85215 0.78103 0.80172 0.77047 1.19052 1.21760 1.21992 1.20602 0.95216 0.85058 0.92772 0.92395 1.22618 1.01329 0.96791 0.99213 1.22738 0.98807 0.92473 0.87398 1.88007 1.81362 1.46766 1.13436 1.22255 0.90618 0.91937 0.86849 1.22353 0.99696 0.97657 0.95379 1.24407 0.90039 0.98104 1.06894 1.87859 1.33419 1.45614 1.44050 1.24741 0.97331 1.02723 0.98782 1.22674 1.00383 0.94721 0.99848 0.98090 0.96761 0.95398 0.94315 0.91238 0.92168 0.92008 0.86424 0.89302 0.87653 0.87621 0.85346 0.87365 0.88901 0.92330 0.93085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.05 7.96 127.77 1.02 10.07 16 2 N -0.61 -30.25 2.82 -702.18 -1.98 -32.23 16 3 C -0.26 -14.44 9.59 84.04 0.81 -13.63 16 4 H 0.07 3.69 7.82 -2.91 -0.02 3.67 16 5 C -0.05 -2.92 5.12 84.86 0.43 -2.49 16 6 N -0.94 -55.87 10.66 21.65 0.23 -55.64 16 7 Si 0.97 45.28 29.57 68.60 2.03 47.31 16 8 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 9 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 10 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 11 C 0.17 6.66 2.39 45.09 0.11 6.77 16 12 H 0.06 2.30 6.33 -2.39 -0.02 2.29 16 13 C -0.16 -5.13 5.46 30.68 0.17 -4.97 16 14 C 0.06 1.56 6.48 72.01 0.47 2.02 16 15 O -0.38 -10.22 10.15 -148.98 -1.51 -11.73 16 16 C 0.12 3.48 1.01 -10.28 -0.01 3.47 16 17 C -0.11 -2.58 5.50 31.37 0.17 -2.40 16 18 C -0.05 -0.92 7.52 72.70 0.55 -0.37 16 19 S -0.34 -8.89 23.22 -56.49 -1.31 -10.20 16 20 C -0.09 -2.42 5.53 72.30 0.40 -2.02 16 21 C -0.14 -4.84 3.87 30.77 0.12 -4.72 16 22 H 0.00 0.04 7.40 -2.39 -0.02 0.03 16 23 H 0.01 0.75 7.25 -2.39 -0.02 0.73 16 24 H 0.03 1.20 6.37 -2.39 -0.02 1.18 16 25 H 0.25 14.32 8.31 -92.70 -0.77 13.55 16 26 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.06 2.03 6.55 -2.39 -0.02 2.01 16 28 H 0.06 1.41 6.05 -2.38 -0.01 1.40 16 29 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.09 2.12 7.85 -2.39 -0.02 2.10 16 31 H 0.11 2.17 8.06 -2.38 -0.02 2.15 16 32 H 0.11 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.11 2.72 6.04 -2.38 -0.01 2.70 16 35 H 0.09 2.90 6.48 -2.39 -0.02 2.89 16 36 H 0.06 2.20 7.59 -2.38 -0.02 2.18 16 37 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -63.38 290.97 2.73 -60.64 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 1.05 Total: 10.13 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: 4.23 Total: -8.28 kcal Atomic # 7 Polarization: -86.12 SS G_CDS: -1.75 Total: -87.87 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: -1.51 Total: -11.73 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Atomic # 16 Polarization: -8.89 SS G_CDS: -1.31 Total: -10.20 kcal Total: -63.38 2.73 -60.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094375426.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.004 kcal (2) G-P(sol) polarization free energy of solvation -63.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds