Wall clock time and date at job start Mon Mar 30 2020 04:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31800 * 120.82970 * 2 1 4 4 C 1.32487 * 121.62627 * 180.02562 * 3 2 1 5 5 C 1.50699 * 118.57385 * 179.97438 * 4 3 2 6 6 N 1.46498 * 109.47108 * 269.99432 * 5 4 3 7 7 C 1.46494 * 120.00607 * 270.00217 * 6 5 4 8 8 C 1.36937 * 119.99680 * 89.99927 * 6 5 4 9 9 H 1.07999 * 120.00336 * 22.35053 * 8 6 5 10 10 C 1.38813 * 120.00052 * 202.35549 * 8 6 5 11 11 N 1.31617 * 119.99908 * 11.34183 * 10 8 6 12 12 Si 1.86801 * 119.99912 * 191.34608 * 10 8 6 13 13 H 1.48491 * 109.47413 * 359.97438 * 12 10 8 14 14 H 1.48505 * 109.46958 * 119.99620 * 12 10 8 15 15 H 1.48503 * 109.46991 * 239.99235 * 12 10 8 16 16 N 1.31159 * 122.85763 * 359.97438 * 4 3 2 17 17 C 1.33859 * 120.24571 * 359.97438 * 16 4 3 18 18 C 1.40267 * 122.05324 * 180.02562 * 17 16 4 19 19 C 1.36210 * 119.58533 * 179.97438 * 18 17 16 20 20 C 1.39354 * 121.09821 * 0.02562 * 19 18 17 21 21 C 1.36215 * 120.96115 * 0.02562 * 20 19 18 22 22 C 1.40272 * 119.47973 * 359.97438 * 21 20 19 23 23 H 1.09006 * 109.46696 * 269.98144 * 1 2 3 24 24 H 1.08998 * 109.46851 * 29.97530 * 1 2 3 25 25 H 1.09001 * 109.47223 * 149.98145 * 1 2 3 26 26 H 1.08994 * 109.46946 * 30.00074 * 5 4 3 27 27 H 1.09004 * 109.47196 * 149.99517 * 5 4 3 28 28 H 1.09000 * 109.47289 * 94.20503 * 7 6 5 29 29 H 1.08994 * 109.47392 * 214.21294 * 7 6 5 30 30 H 1.09010 * 109.46938 * 334.20980 * 7 6 5 31 31 H 0.97001 * 119.99978 * 180.02562 * 11 10 8 32 32 H 1.07999 * 120.20758 * 359.97438 * 18 17 16 33 33 H 1.08000 * 119.45175 * 179.97438 * 19 18 17 34 34 H 1.08004 * 119.51542 * 180.02562 * 20 19 18 35 35 H 1.08007 * 120.25835 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1825 1.1318 0.0000 4 6 3.5072 1.1502 -0.0005 5 6 4.2095 2.4835 -0.0011 6 7 4.4367 2.9152 -1.3824 7 6 5.6727 2.5398 -2.0734 8 6 3.4936 3.6696 -2.0278 9 1 2.7791 4.2446 -1.4575 10 6 3.4557 3.6952 -3.4152 11 7 4.1687 2.8335 -4.1090 12 14 2.3930 4.9529 -4.2975 13 1 1.6951 5.8000 -3.2974 14 1 3.2492 5.8071 -5.1592 15 1 1.3895 4.2508 -5.1374 16 7 4.2341 0.0584 -0.0005 17 6 3.6452 -1.1437 0.0005 18 6 4.3853 -2.3352 0.0010 19 6 3.7339 -3.5314 0.0025 20 6 2.3418 -3.5930 0.0031 21 6 1.5901 -2.4570 0.0015 22 6 2.2276 -1.2075 -0.0001 23 1 -0.3633 -0.0003 1.0277 24 1 -0.3633 0.8902 -0.5134 25 1 -0.3634 -0.8898 -0.5141 26 1 3.5916 3.2198 0.5128 27 1 5.1665 2.3904 0.5125 28 1 5.5056 1.6285 -2.6476 29 1 5.9714 3.3436 -2.7462 30 1 6.4610 2.3679 -1.3403 31 1 4.1425 2.8516 -5.0785 32 1 5.4648 -2.3043 0.0002 33 1 4.3059 -4.4475 0.0025 34 1 1.8517 -4.5554 0.0047 35 1 0.5118 -2.5179 0.0024 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101918686.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:13 Heat of formation + Delta-G solvation = 89.079020 kcal Electronic energy + Delta-G solvation = -18687.906143 eV Core-core repulsion = 15879.748458 eV Total energy + Delta-G solvation = -2808.157685 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.85061 -37.48443 -35.52960 -34.36175 -31.83722 -30.91749 -30.13747 -28.27482 -26.82698 -25.81253 -23.59274 -22.91997 -21.22272 -20.65305 -18.00257 -17.51889 -16.71864 -15.76502 -15.04637 -14.74122 -14.47488 -14.07394 -13.85715 -13.54359 -13.14843 -12.88650 -12.82624 -12.22483 -12.08156 -11.72386 -11.66698 -11.43455 -11.19256 -10.88838 -10.68204 -10.36752 -10.28500 -10.15537 -9.99827 -9.90139 -8.84590 -8.62034 -8.55658 -7.96856 -6.89260 -5.80374 -3.21318 0.61885 1.16008 2.26950 3.30221 3.37342 3.42461 3.45753 4.38512 4.49529 4.55990 4.65804 4.70010 4.92388 5.01879 5.25978 5.38936 5.47366 5.55714 5.61770 5.66728 5.69918 5.91116 6.05894 6.16525 6.25978 6.34588 6.43573 6.53445 6.60064 6.81293 6.86509 7.10158 7.37175 7.69771 7.74646 7.79837 8.30490 8.88798 9.15342 9.74809 10.23755 11.23264 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.024027 B = 0.006402 C = 0.005865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.053082 B = 4372.517786 C = 4772.665480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.208 3.792 3 N -0.502 5.502 4 C 0.323 3.677 5 C 0.205 3.795 6 N -0.575 5.575 7 C 0.163 3.837 8 C -0.243 4.243 9 H 0.078 0.922 10 C 0.000 4.000 11 N -0.901 5.901 12 Si 0.911 3.089 13 H -0.275 1.275 14 H -0.288 1.288 15 H -0.290 1.290 16 N -0.517 5.517 17 C 0.170 3.830 18 C -0.106 4.106 19 C -0.089 4.089 20 C -0.145 4.145 21 C -0.071 4.071 22 C -0.182 4.182 23 H 0.083 0.917 24 H 0.086 0.914 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.028 0.972 29 H 0.050 0.950 30 H 0.005 0.995 31 H 0.254 0.746 32 H 0.133 0.867 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.322 -10.707 8.917 14.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.047 3.953 3 N -0.216 5.216 4 C 0.054 3.946 5 C 0.075 3.925 6 N -0.294 5.294 7 C 0.019 3.981 8 C -0.373 4.373 9 H 0.095 0.905 10 C -0.199 4.199 11 N -0.545 5.545 12 Si 0.740 3.260 13 H -0.199 1.199 14 H -0.215 1.215 15 H -0.217 1.217 16 N -0.233 5.233 17 C 0.040 3.960 18 C -0.125 4.125 19 C -0.111 4.111 20 C -0.163 4.163 21 C -0.091 4.091 22 C -0.187 4.187 23 H 0.101 0.899 24 H 0.105 0.895 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.024 0.976 31 H 0.064 0.936 32 H 0.151 0.849 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.605 -9.735 8.687 13.537 hybrid contribution -1.065 -0.557 -0.925 1.516 sum -4.670 -10.292 7.763 13.711 Atomic orbital electron populations 1.20765 0.88320 1.04027 1.03187 1.22080 0.96963 0.87698 0.88579 1.68096 1.10523 1.29410 1.13559 1.25225 0.85964 0.96682 0.86744 1.20042 0.96768 0.86546 0.89161 1.44405 1.17892 1.56524 1.10614 1.20874 0.84117 0.99871 0.93224 1.19451 1.11084 1.17735 0.89053 0.90450 1.25179 0.99245 0.98527 0.96966 1.70114 1.43046 1.35485 1.05807 0.86076 0.79703 0.80638 0.79559 1.19944 1.21456 1.21725 1.68715 1.39916 0.97535 1.17138 1.19064 0.89817 0.93142 0.93999 1.20713 1.00265 0.90245 1.01300 1.20894 0.94582 0.97584 0.98002 1.20792 0.93994 0.98294 1.03235 1.20902 0.99719 0.91141 0.97349 1.19332 0.95513 0.95557 1.08322 0.89886 0.89528 0.90470 0.90914 0.91439 0.95369 0.93148 0.97645 0.93608 0.84876 0.85663 0.85938 0.85355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 9.80 36.01 0.35 -1.04 16 2 C 0.21 3.84 6.90 -81.71 -0.56 3.28 16 3 N -0.50 -11.02 10.22 -6.60 -0.07 -11.09 16 4 C 0.32 7.39 7.21 -157.14 -1.13 6.26 16 5 C 0.20 4.61 6.11 -5.20 -0.03 4.58 16 6 N -0.58 -15.09 2.91 -182.51 -0.53 -15.62 16 7 C 0.16 4.23 9.01 59.84 0.54 4.77 16 8 C -0.24 -6.81 9.67 -15.06 -0.15 -6.96 16 9 H 0.08 2.12 7.84 -52.49 -0.41 1.71 16 10 C 0.00 0.00 5.13 -17.43 -0.09 -0.09 16 11 N -0.90 -26.87 10.59 55.49 0.59 -26.28 16 12 Si 0.91 22.17 29.57 -169.99 -5.03 17.14 16 13 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 15 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 16 N -0.52 -11.47 10.33 -8.74 -0.09 -11.56 16 17 C 0.17 3.32 6.62 -84.82 -0.56 2.76 16 18 C -0.11 -1.69 10.01 -39.55 -0.40 -2.09 16 19 C -0.09 -1.13 9.94 -39.90 -0.40 -1.52 16 20 C -0.14 -1.73 9.95 -39.89 -0.40 -2.13 16 21 C -0.07 -0.95 9.34 -39.55 -0.37 -1.32 16 22 C -0.18 -3.23 5.74 -106.83 -0.61 -3.84 16 23 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.08 0.82 6.58 -51.93 -0.34 0.48 16 26 H 0.07 1.56 8.03 -51.93 -0.42 1.14 16 27 H 0.07 1.38 7.86 -51.93 -0.41 0.97 16 28 H 0.03 0.81 7.42 -51.93 -0.39 0.42 16 29 H 0.05 1.36 7.19 -51.93 -0.37 0.99 16 30 H 0.00 0.12 7.85 -51.92 -0.41 -0.29 16 31 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.13 1.95 8.06 -52.49 -0.42 1.53 16 33 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 35 H 0.13 1.32 6.54 -52.48 -0.34 0.98 16 LS Contribution 298.43 15.07 4.50 4.50 Total: -1.00 -33.35 298.43 -8.77 -42.12 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -4.34 Total: -1.86 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: -3.80 Total: 2.65 kcal Atomic # 7 Polarization: -64.45 SS G_CDS: -0.10 Total: -64.55 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.14 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.35 -8.77 -42.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101918686.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.197 kcal (2) G-P(sol) polarization free energy of solvation -33.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds