Wall clock time and date at job start Mon Mar 30 2020 04:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31800 * 120.82970 * 2 1 4 4 C 1.32487 * 121.62627 * 180.02562 * 3 2 1 5 5 C 1.50699 * 118.57385 * 179.97438 * 4 3 2 6 6 N 1.46498 * 109.47108 * 269.99432 * 5 4 3 7 7 C 1.46494 * 120.00607 * 270.00217 * 6 5 4 8 8 C 1.36937 * 119.99680 * 89.99927 * 6 5 4 9 9 H 1.07999 * 120.00336 * 22.35053 * 8 6 5 10 10 C 1.38813 * 120.00052 * 202.35549 * 8 6 5 11 11 N 1.31617 * 119.99908 * 11.34183 * 10 8 6 12 12 Si 1.86801 * 119.99912 * 191.34608 * 10 8 6 13 13 H 1.48491 * 109.47413 * 359.97438 * 12 10 8 14 14 H 1.48505 * 109.46958 * 119.99620 * 12 10 8 15 15 H 1.48503 * 109.46991 * 239.99235 * 12 10 8 16 16 N 1.31159 * 122.85763 * 359.97438 * 4 3 2 17 17 C 1.33859 * 120.24571 * 359.97438 * 16 4 3 18 18 C 1.40267 * 122.05324 * 180.02562 * 17 16 4 19 19 C 1.36210 * 119.58533 * 179.97438 * 18 17 16 20 20 C 1.39354 * 121.09821 * 0.02562 * 19 18 17 21 21 C 1.36215 * 120.96115 * 0.02562 * 20 19 18 22 22 C 1.40272 * 119.47973 * 359.97438 * 21 20 19 23 23 H 1.09006 * 109.46696 * 269.98144 * 1 2 3 24 24 H 1.08998 * 109.46851 * 29.97530 * 1 2 3 25 25 H 1.09001 * 109.47223 * 149.98145 * 1 2 3 26 26 H 1.08994 * 109.46946 * 30.00074 * 5 4 3 27 27 H 1.09004 * 109.47196 * 149.99517 * 5 4 3 28 28 H 1.09000 * 109.47289 * 94.20503 * 7 6 5 29 29 H 1.08994 * 109.47392 * 214.21294 * 7 6 5 30 30 H 1.09010 * 109.46938 * 334.20980 * 7 6 5 31 31 H 0.97001 * 119.99978 * 180.02562 * 11 10 8 32 32 H 1.07999 * 120.20758 * 359.97438 * 18 17 16 33 33 H 1.08000 * 119.45175 * 179.97438 * 19 18 17 34 34 H 1.08004 * 119.51542 * 180.02562 * 20 19 18 35 35 H 1.08007 * 120.25835 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1825 1.1318 0.0000 4 6 3.5072 1.1502 -0.0005 5 6 4.2095 2.4835 -0.0011 6 7 4.4367 2.9152 -1.3824 7 6 5.6727 2.5398 -2.0734 8 6 3.4936 3.6696 -2.0278 9 1 2.7791 4.2446 -1.4575 10 6 3.4557 3.6952 -3.4152 11 7 4.1687 2.8335 -4.1090 12 14 2.3930 4.9529 -4.2975 13 1 1.6951 5.8000 -3.2974 14 1 3.2492 5.8071 -5.1592 15 1 1.3895 4.2508 -5.1374 16 7 4.2341 0.0584 -0.0005 17 6 3.6452 -1.1437 0.0005 18 6 4.3853 -2.3352 0.0010 19 6 3.7339 -3.5314 0.0025 20 6 2.3418 -3.5930 0.0031 21 6 1.5901 -2.4570 0.0015 22 6 2.2276 -1.2075 -0.0001 23 1 -0.3633 -0.0003 1.0277 24 1 -0.3633 0.8902 -0.5134 25 1 -0.3634 -0.8898 -0.5141 26 1 3.5916 3.2198 0.5128 27 1 5.1665 2.3904 0.5125 28 1 5.5056 1.6285 -2.6476 29 1 5.9714 3.3436 -2.7462 30 1 6.4610 2.3679 -1.3403 31 1 4.1425 2.8516 -5.0785 32 1 5.4648 -2.3043 0.0002 33 1 4.3059 -4.4475 0.0025 34 1 1.8517 -4.5554 0.0047 35 1 0.5118 -2.5179 0.0024 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000101918686.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:12 Heat of formation + Delta-G solvation = 67.568662 kcal Electronic energy + Delta-G solvation = -18688.838902 eV Core-core repulsion = 15879.748458 eV Total energy + Delta-G solvation = -2809.090444 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.23673 -38.81794 -37.35925 -35.79197 -33.62968 -32.44265 -31.44464 -29.54057 -28.54518 -27.86946 -24.81869 -24.56888 -22.76192 -22.20091 -19.39685 -18.87704 -18.64878 -17.19804 -16.82937 -16.25920 -15.75261 -15.51244 -15.29842 -15.18225 -14.94843 -14.39551 -13.98040 -13.57704 -13.36491 -13.21703 -13.09163 -13.06548 -12.77661 -12.58219 -12.53856 -12.27000 -12.08690 -11.89435 -11.63204 -11.52059 -10.72573 -10.12354 -10.06358 -9.24940 -8.95321 -7.89750 -5.38696 -0.64067 -0.15877 0.97558 1.42944 1.43407 1.55809 2.07013 2.47512 3.00343 3.17254 3.24619 3.33519 3.47792 3.72321 3.74523 4.00515 4.21461 4.31671 4.41930 4.47160 4.56828 4.70527 4.75509 4.80610 4.86915 4.97179 5.05382 5.12028 5.23042 5.27837 5.42640 5.55305 5.60126 5.63848 5.86556 6.22963 6.28121 7.05267 7.36030 7.72568 8.18427 9.14153 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.024027 B = 0.006402 C = 0.005865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.053082 B = 4372.517786 C = 4772.665480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.199 3.801 3 N -0.542 5.542 4 C 0.304 3.696 5 C 0.208 3.792 6 N -0.595 5.595 7 C 0.186 3.814 8 C -0.252 4.252 9 H 0.076 0.924 10 C -0.057 4.057 11 N -0.941 5.941 12 Si 0.976 3.024 13 H -0.262 1.262 14 H -0.286 1.286 15 H -0.294 1.294 16 N -0.541 5.541 17 C 0.126 3.874 18 C -0.134 4.134 19 C -0.067 4.067 20 C -0.125 4.125 21 C -0.073 4.073 22 C -0.195 4.195 23 H 0.112 0.888 24 H 0.074 0.926 25 H 0.109 0.891 26 H 0.077 0.923 27 H 0.080 0.920 28 H -0.009 1.009 29 H 0.028 0.972 30 H 0.030 0.970 31 H 0.248 0.752 32 H 0.133 0.867 33 H 0.168 0.832 34 H 0.173 0.827 35 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.548 -13.833 10.037 18.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.039 3.961 3 N -0.257 5.257 4 C 0.033 3.967 5 C 0.079 3.921 6 N -0.316 5.316 7 C 0.041 3.959 8 C -0.382 4.382 9 H 0.094 0.906 10 C -0.251 4.251 11 N -0.588 5.588 12 Si 0.803 3.197 13 H -0.186 1.186 14 H -0.213 1.213 15 H -0.222 1.222 16 N -0.257 5.257 17 C -0.002 4.002 18 C -0.153 4.153 19 C -0.088 4.088 20 C -0.143 4.143 21 C -0.093 4.093 22 C -0.199 4.199 23 H 0.130 0.870 24 H 0.093 0.907 25 H 0.128 0.872 26 H 0.095 0.905 27 H 0.098 0.902 28 H 0.009 0.991 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.151 0.849 33 H 0.186 0.814 34 H 0.190 0.810 35 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -5.858 -12.917 9.867 17.278 hybrid contribution -0.424 0.011 -1.022 1.106 sum -6.283 -12.906 8.845 16.860 Atomic orbital electron populations 1.20944 0.84578 1.05025 1.05288 1.22996 0.99307 0.87211 0.86607 1.68067 1.10171 1.31459 1.16048 1.24866 0.86858 0.96654 0.88303 1.19971 0.97616 0.87175 0.87341 1.44344 1.17898 1.58200 1.11190 1.20505 0.85111 0.97177 0.93084 1.19634 1.10768 1.18363 0.89432 0.90617 1.25943 1.00949 1.00550 0.97656 1.70301 1.45482 1.37634 1.05384 0.85065 0.77888 0.78381 0.78316 1.18568 1.21279 1.22167 1.68613 1.40885 0.98648 1.17579 1.19666 0.91645 0.93193 0.95656 1.20930 1.00630 0.90474 1.03259 1.21468 0.95595 0.97656 0.94096 1.21447 0.93596 0.99915 0.99352 1.21379 1.01924 0.89567 0.96450 1.19712 0.94882 0.97332 1.07997 0.86963 0.90668 0.87249 0.90503 0.90191 0.99098 0.95293 0.95119 0.94331 0.84868 0.81433 0.80954 0.81414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.40 9.80 71.24 0.70 -1.70 16 2 C 0.20 7.15 6.90 43.14 0.30 7.45 16 3 N -0.54 -24.40 10.22 -174.79 -1.79 -26.18 16 4 C 0.30 14.45 7.21 138.73 1.00 15.45 16 5 C 0.21 9.79 6.11 85.63 0.52 10.31 16 6 N -0.60 -32.67 2.91 -731.33 -2.13 -34.80 16 7 C 0.19 10.17 9.01 127.77 1.15 11.32 16 8 C -0.25 -14.65 9.67 84.03 0.81 -13.84 16 9 H 0.08 4.30 7.84 -2.91 -0.02 4.28 16 10 C -0.06 -3.33 5.13 84.86 0.44 -2.89 16 11 N -0.94 -58.92 10.59 21.65 0.23 -58.69 16 12 Si 0.98 47.04 29.57 68.60 2.03 49.07 16 13 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 14 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 15 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 16 N -0.54 -24.89 10.33 -181.58 -1.88 -26.77 16 17 C 0.13 4.93 6.62 40.24 0.27 5.20 16 18 C -0.13 -4.07 10.01 22.29 0.22 -3.85 16 19 C -0.07 -1.39 9.94 22.07 0.22 -1.17 16 20 C -0.13 -2.22 9.95 22.07 0.22 -2.00 16 21 C -0.07 -1.62 9.34 22.29 0.21 -1.41 16 22 C -0.19 -6.57 5.74 -21.30 -0.12 -6.69 16 23 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 24 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.11 1.84 6.58 -2.39 -0.02 1.82 16 26 H 0.08 3.45 8.03 -2.39 -0.02 3.43 16 27 H 0.08 3.43 7.86 -2.39 -0.02 3.41 16 28 H -0.01 -0.58 7.42 -2.39 -0.02 -0.60 16 29 H 0.03 1.64 7.19 -2.39 -0.02 1.63 16 30 H 0.03 1.46 7.85 -2.38 -0.02 1.44 16 31 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 32 H 0.13 3.89 8.06 -2.91 -0.02 3.86 16 33 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 34 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 35 H 0.17 2.36 6.54 -2.91 -0.02 2.34 16 Total: -1.00 -78.96 298.43 3.49 -75.47 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: 1.09 Total: 5.73 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: 5.93 Total: 16.16 kcal Atomic # 7 Polarization: -140.88 SS G_CDS: -5.56 Total: -146.44 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -78.96 3.49 -75.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101918686.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.040 kcal (2) G-P(sol) polarization free energy of solvation -78.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds