Wall clock time and date at job start Mon Mar 30 2020 04:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47201 * 132.77743 * 3 2 1 5 5 C 1.36939 * 119.99995 * 263.93155 * 4 3 2 6 6 H 1.07996 * 120.00135 * 199.83718 * 5 4 3 7 7 C 1.38817 * 119.99798 * 19.83895 * 5 4 3 8 8 N 1.31621 * 120.00183 * 21.95565 * 7 5 4 9 9 Si 1.86804 * 119.99953 * 201.95624 * 7 5 4 10 10 H 1.48503 * 109.46816 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.46987 * 119.99710 * 9 7 5 12 12 H 1.48497 * 109.46843 * 239.99895 * 9 7 5 13 13 C 1.46503 * 120.00369 * 83.93463 * 4 3 2 14 14 H 1.09005 * 110.26468 * 0.69489 * 13 4 3 15 15 C 1.54345 * 110.29944 * 238.62720 * 13 4 3 16 16 C 1.54354 * 102.38448 * 214.72056 * 15 13 4 17 17 H 1.09002 * 110.29633 * 145.27390 * 16 15 13 18 18 N 1.46893 * 110.30545 * 267.42183 * 16 15 13 19 19 C 1.51367 * 105.17130 * 26.34908 * 16 15 13 20 20 C 1.38500 * 130.39165 * 162.81156 * 19 16 15 21 21 C 1.38524 * 120.09661 * 179.83533 * 20 19 16 22 22 C 1.38253 * 119.98417 * 0.15823 * 21 20 19 23 23 C 1.38095 * 119.93505 * 359.88323 * 22 21 20 24 24 C 1.38383 * 109.78180 * 342.73192 * 19 16 15 25 25 H 1.09001 * 109.46770 * 252.77839 * 3 2 1 26 26 H 1.08999 * 109.46849 * 12.77338 * 3 2 1 27 27 H 0.96998 * 119.99948 * 180.02562 * 8 7 5 28 28 H 1.08996 * 110.82238 * 332.94485 * 15 13 4 29 29 H 1.09000 * 110.82311 * 96.30720 * 15 13 4 30 30 H 1.00901 * 111.00178 * 180.02562 * 18 16 15 31 31 H 1.00909 * 111.00297 * 303.95622 * 18 16 15 32 32 H 1.07997 * 119.89353 * 0.02562 * 20 19 16 33 33 H 1.08006 * 119.98298 * 180.02562 * 21 20 19 34 34 H 1.08006 * 120.02866 * 179.90258 * 22 21 20 35 35 H 1.08004 * 119.89240 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0959 0.9389 -1.0138 5 6 3.4426 0.4835 -2.2578 6 1 4.0866 1.0768 -2.8899 7 6 2.9661 -0.7407 -2.7064 8 7 1.8803 -1.2597 -2.1734 9 14 3.8659 -1.6516 -4.0666 10 1 5.0483 -0.8610 -4.4936 11 1 4.3107 -2.9766 -3.5649 12 1 2.9537 -1.8409 -5.2230 13 6 3.2131 2.3644 -0.6967 14 1 2.9089 2.5482 0.3338 15 6 2.3521 3.2012 -1.6666 16 6 3.1961 4.4823 -1.8373 17 1 3.0973 4.8677 -2.8521 18 7 2.7816 5.4995 -0.8621 19 6 4.6240 4.0539 -1.5748 20 6 5.8201 4.6795 -1.8848 21 6 7.0237 4.0890 -1.5361 22 6 7.0317 2.8718 -0.8805 23 6 5.8393 2.2473 -0.5720 24 6 4.6342 2.8364 -0.9171 25 1 2.9711 0.3051 0.9816 26 1 2.9717 -1.0014 -0.2272 27 1 1.5476 -2.1153 -2.4866 28 1 2.2315 2.6868 -2.6200 29 1 1.3818 3.4289 -1.2255 30 1 3.3268 6.3423 -0.9647 31 1 1.7949 5.6956 -0.9412 32 1 5.8133 5.6305 -2.3965 33 1 7.9553 4.5786 -1.7784 34 1 7.9698 2.4100 -0.6097 35 1 5.8464 1.2967 -0.0594 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132251138.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:54 Heat of formation + Delta-G solvation = 83.209003 kcal Electronic energy + Delta-G solvation = -19090.906276 eV Core-core repulsion = 16282.494047 eV Total energy + Delta-G solvation = -2808.412228 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.77381 -36.49672 -35.40656 -34.16978 -32.09305 -30.45242 -30.07611 -28.17297 -26.75716 -25.28702 -22.53140 -22.14003 -20.11635 -19.67775 -17.39526 -16.25012 -15.73617 -15.60258 -15.22654 -14.64110 -14.56456 -14.14237 -13.71020 -13.55405 -12.79508 -12.61990 -12.35275 -12.01170 -11.95971 -11.37779 -11.24066 -11.07375 -10.89426 -10.88857 -10.77299 -10.60128 -10.38954 -10.06902 -9.90133 -9.83023 -8.74338 -8.59321 -8.29074 -8.00796 -7.14041 -5.96293 -3.35369 1.83469 1.91490 3.31962 3.42134 3.44200 4.08399 4.28269 4.39217 4.50564 4.79274 5.02810 5.08598 5.23687 5.38778 5.41364 5.45518 5.59229 5.71953 5.83060 5.95735 6.05848 6.09552 6.29657 6.42738 6.51007 6.58403 6.72691 6.85954 6.90324 6.97495 7.02401 7.27667 7.35339 7.49383 7.61002 7.72870 8.16030 8.97762 9.21716 9.63038 10.08563 11.12027 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.017626 B = 0.008866 C = 0.007057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.191408 B = 3157.273774 C = 3966.678844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C 0.249 3.751 3 C 0.257 3.743 4 N -0.573 5.573 5 C -0.254 4.254 6 H 0.078 0.922 7 C 0.006 3.994 8 N -0.898 5.898 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.293 1.293 13 C 0.211 3.789 14 H 0.076 0.924 15 C -0.122 4.122 16 C 0.130 3.870 17 H 0.036 0.964 18 N -0.837 5.837 19 C -0.094 4.094 20 C -0.111 4.111 21 C -0.135 4.135 22 C -0.125 4.125 23 C -0.087 4.087 24 C -0.058 4.058 25 H 0.059 0.941 26 H 0.109 0.891 27 H 0.258 0.742 28 H 0.090 0.910 29 H 0.065 0.935 30 H 0.335 0.665 31 H 0.340 0.660 32 H 0.107 0.893 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.392 9.972 2.766 13.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.188 5.188 2 C -0.070 4.070 3 C 0.127 3.873 4 N -0.292 5.292 5 C -0.383 4.383 6 H 0.096 0.904 7 C -0.193 4.193 8 N -0.541 5.541 9 Si 0.731 3.269 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.220 1.220 13 C 0.103 3.897 14 H 0.094 0.906 15 C -0.162 4.162 16 C 0.019 3.981 17 H 0.054 0.946 18 N -0.367 5.367 19 C -0.095 4.095 20 C -0.130 4.130 21 C -0.154 4.154 22 C -0.143 4.143 23 C -0.105 4.105 24 C -0.060 4.060 25 H 0.077 0.923 26 H 0.127 0.873 27 H 0.069 0.931 28 H 0.108 0.892 29 H 0.083 0.917 30 H 0.147 0.853 31 H 0.153 0.847 32 H 0.125 0.875 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.860 9.256 3.258 11.973 hybrid contribution 0.544 -0.002 -1.936 2.011 sum 7.404 9.254 1.322 11.925 Atomic orbital electron populations 1.80799 1.14488 1.11045 1.12502 1.30482 0.96323 0.90724 0.89463 1.18282 0.80544 0.97503 0.90946 1.44183 1.73887 1.00130 1.10991 1.19141 1.23511 1.02492 0.93129 0.90386 1.24901 0.95929 0.99824 0.98621 1.69914 1.19523 1.19644 1.45067 0.86235 0.79452 0.79877 0.81332 1.20140 1.21390 1.21965 1.19899 0.88570 0.84170 0.97046 0.90589 1.22785 0.97569 0.93444 1.02390 1.20732 0.91532 0.93343 0.92469 0.94644 1.58713 1.08675 1.13711 1.55610 1.20388 0.93609 0.96143 0.99404 1.20553 0.91673 0.99430 1.01303 1.20923 0.96970 0.96525 1.00947 1.20983 0.97701 0.95646 0.99958 1.20610 0.90961 0.99290 0.99628 1.21215 0.96412 0.93663 0.94735 0.92283 0.87314 0.93146 0.89182 0.91652 0.85270 0.84664 0.87499 0.86910 0.86678 0.86078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.90 18.54 42.15 0.78 -12.11 16 2 C 0.25 5.85 13.56 -20.76 -0.28 5.57 16 3 C 0.26 5.34 5.36 -6.83 -0.04 5.30 16 4 N -0.57 -12.37 2.47 -169.11 -0.42 -12.79 16 5 C -0.25 -6.14 8.09 -15.06 -0.12 -6.27 16 6 H 0.08 1.95 7.55 -52.49 -0.40 1.56 16 7 C 0.01 0.16 4.83 -17.43 -0.08 0.07 16 8 N -0.90 -24.08 9.60 55.49 0.53 -23.54 16 9 Si 0.90 20.62 29.61 -169.99 -5.03 15.59 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 C 0.21 4.01 3.38 -68.05 -0.23 3.78 16 14 H 0.08 1.41 7.92 -51.93 -0.41 1.00 16 15 C -0.12 -2.25 6.33 -25.32 -0.16 -2.41 16 16 C 0.13 2.01 3.99 -67.83 -0.27 1.74 16 17 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 18 N -0.84 -10.87 9.28 -4.77 -0.04 -10.91 16 19 C -0.09 -1.56 5.77 -104.14 -0.60 -2.16 16 20 C -0.11 -1.63 10.06 -39.38 -0.40 -2.03 16 21 C -0.14 -1.89 10.06 -39.47 -0.40 -2.29 16 22 C -0.12 -1.83 10.05 -39.63 -0.40 -2.23 16 23 C -0.09 -1.45 10.00 -39.54 -0.40 -1.85 16 24 C -0.06 -1.03 4.93 -104.15 -0.51 -1.55 16 25 H 0.06 1.00 8.06 -51.93 -0.42 0.58 16 26 H 0.11 2.40 6.61 -51.93 -0.34 2.06 16 27 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 28 H 0.09 1.91 7.12 -51.93 -0.37 1.54 16 29 H 0.06 1.19 7.98 -51.93 -0.41 0.77 16 30 H 0.34 3.71 9.07 -39.29 -0.36 3.35 16 31 H 0.34 3.92 8.92 -39.29 -0.35 3.57 16 32 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.11 1.27 8.06 -52.48 -0.42 0.85 16 34 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 35 H 0.12 1.97 8.06 -52.48 -0.42 1.55 16 LS Contribution 299.14 15.07 4.51 4.51 Total: -1.00 -28.88 299.14 -7.87 -36.75 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -4.31 Total: 6.81 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -3.89 Total: -4.30 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: 0.85 Total: -59.36 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.59 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.88 -7.87 -36.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132251138.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.959 kcal (2) G-P(sol) polarization free energy of solvation -28.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds