Wall clock time and date at job start Mon Mar 30 2020 04:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47201 * 132.77743 * 3 2 1 5 5 C 1.36939 * 119.99995 * 263.93155 * 4 3 2 6 6 H 1.07996 * 120.00135 * 199.83718 * 5 4 3 7 7 C 1.38817 * 119.99798 * 19.83895 * 5 4 3 8 8 N 1.31621 * 120.00183 * 21.95565 * 7 5 4 9 9 Si 1.86804 * 119.99953 * 201.95624 * 7 5 4 10 10 H 1.48503 * 109.46816 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.46987 * 119.99710 * 9 7 5 12 12 H 1.48497 * 109.46843 * 239.99895 * 9 7 5 13 13 C 1.46503 * 120.00369 * 83.93463 * 4 3 2 14 14 H 1.09005 * 110.26468 * 0.69489 * 13 4 3 15 15 C 1.54345 * 110.29944 * 238.62720 * 13 4 3 16 16 C 1.54354 * 102.38448 * 214.72056 * 15 13 4 17 17 H 1.09002 * 110.29633 * 145.27390 * 16 15 13 18 18 N 1.46893 * 110.30545 * 267.42183 * 16 15 13 19 19 C 1.51367 * 105.17130 * 26.34908 * 16 15 13 20 20 C 1.38500 * 130.39165 * 162.81156 * 19 16 15 21 21 C 1.38524 * 120.09661 * 179.83533 * 20 19 16 22 22 C 1.38253 * 119.98417 * 0.15823 * 21 20 19 23 23 C 1.38095 * 119.93505 * 359.88323 * 22 21 20 24 24 C 1.38383 * 109.78180 * 342.73192 * 19 16 15 25 25 H 1.09001 * 109.46770 * 252.77839 * 3 2 1 26 26 H 1.08999 * 109.46849 * 12.77338 * 3 2 1 27 27 H 0.96998 * 119.99948 * 180.02562 * 8 7 5 28 28 H 1.08996 * 110.82238 * 332.94485 * 15 13 4 29 29 H 1.09000 * 110.82311 * 96.30720 * 15 13 4 30 30 H 1.00901 * 111.00178 * 180.02562 * 18 16 15 31 31 H 1.00909 * 111.00297 * 303.95622 * 18 16 15 32 32 H 1.07997 * 119.89353 * 0.02562 * 20 19 16 33 33 H 1.08006 * 119.98298 * 180.02562 * 21 20 19 34 34 H 1.08006 * 120.02866 * 179.90258 * 22 21 20 35 35 H 1.08004 * 119.89240 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0959 0.9389 -1.0138 5 6 3.4426 0.4835 -2.2578 6 1 4.0866 1.0768 -2.8899 7 6 2.9661 -0.7407 -2.7064 8 7 1.8803 -1.2597 -2.1734 9 14 3.8659 -1.6516 -4.0666 10 1 5.0483 -0.8610 -4.4936 11 1 4.3107 -2.9766 -3.5649 12 1 2.9537 -1.8409 -5.2230 13 6 3.2131 2.3644 -0.6967 14 1 2.9089 2.5482 0.3338 15 6 2.3521 3.2012 -1.6666 16 6 3.1961 4.4823 -1.8373 17 1 3.0973 4.8677 -2.8521 18 7 2.7816 5.4995 -0.8621 19 6 4.6240 4.0539 -1.5748 20 6 5.8201 4.6795 -1.8848 21 6 7.0237 4.0890 -1.5361 22 6 7.0317 2.8718 -0.8805 23 6 5.8393 2.2473 -0.5720 24 6 4.6342 2.8364 -0.9171 25 1 2.9711 0.3051 0.9816 26 1 2.9717 -1.0014 -0.2272 27 1 1.5476 -2.1153 -2.4866 28 1 2.2315 2.6868 -2.6200 29 1 1.3818 3.4289 -1.2255 30 1 3.3268 6.3423 -0.9647 31 1 1.7949 5.6956 -0.9412 32 1 5.8133 5.6305 -2.3965 33 1 7.9553 4.5786 -1.7784 34 1 7.9698 2.4100 -0.6097 35 1 5.8464 1.2967 -0.0594 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132251138.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:54 Heat of formation + Delta-G solvation = 65.934696 kcal Electronic energy + Delta-G solvation = -19091.655346 eV Core-core repulsion = 16282.494047 eV Total energy + Delta-G solvation = -2809.161298 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.06012 -38.07514 -36.82408 -35.94174 -33.69296 -31.99204 -31.24139 -29.51724 -28.50419 -26.78702 -24.13517 -23.38404 -21.40287 -21.06451 -19.17747 -17.84715 -17.25742 -16.98406 -16.42441 -16.20700 -15.82421 -15.53660 -15.30086 -15.06905 -14.09483 -14.00304 -13.92584 -13.73437 -13.26915 -13.21357 -12.93958 -12.75065 -12.71094 -12.39099 -12.22645 -12.05398 -11.84167 -11.78937 -11.64510 -11.38286 -10.61440 -9.69692 -9.46035 -9.26232 -8.92746 -7.90413 -5.27983 0.65296 0.72383 1.47716 1.53965 1.61424 2.30272 2.53018 2.62421 3.05051 3.28146 3.60581 3.67798 3.80874 3.95064 3.96749 4.28972 4.34534 4.39754 4.49242 4.61919 4.71619 4.86083 4.96908 5.05076 5.12640 5.21909 5.26332 5.36219 5.47709 5.72296 5.75061 5.82903 6.04039 6.25451 6.29794 6.34698 6.67651 7.08281 7.35416 7.79856 8.21954 9.16001 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.017626 B = 0.008866 C = 0.007057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.191408 B = 3157.273774 C = 3966.678844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C 0.261 3.739 3 C 0.257 3.743 4 N -0.579 5.579 5 C -0.233 4.233 6 H 0.070 0.930 7 C -0.039 4.039 8 N -0.926 5.926 9 Si 0.953 3.047 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.307 1.307 13 C 0.209 3.791 14 H 0.079 0.921 15 C -0.120 4.120 16 C 0.142 3.858 17 H 0.041 0.959 18 N -0.836 5.836 19 C -0.107 4.107 20 C -0.114 4.114 21 C -0.130 4.130 22 C -0.126 4.126 23 C -0.104 4.104 24 C -0.084 4.084 25 H 0.103 0.897 26 H 0.097 0.903 27 H 0.248 0.752 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.350 0.650 31 H 0.349 0.651 32 H 0.133 0.867 33 H 0.146 0.854 34 H 0.141 0.859 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.687 11.782 2.908 16.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.229 5.229 2 C -0.057 4.057 3 C 0.127 3.873 4 N -0.298 5.298 5 C -0.363 4.363 6 H 0.088 0.912 7 C -0.235 4.235 8 N -0.572 5.572 9 Si 0.784 3.216 10 H -0.195 1.195 11 H -0.215 1.215 12 H -0.235 1.235 13 C 0.103 3.897 14 H 0.097 0.903 15 C -0.160 4.160 16 C 0.031 3.969 17 H 0.059 0.941 18 N -0.369 5.369 19 C -0.108 4.108 20 C -0.132 4.132 21 C -0.148 4.148 22 C -0.144 4.144 23 C -0.122 4.122 24 C -0.086 4.086 25 H 0.121 0.879 26 H 0.115 0.885 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.164 0.836 31 H 0.163 0.837 32 H 0.151 0.849 33 H 0.164 0.836 34 H 0.159 0.841 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 9.183 11.109 3.409 14.811 hybrid contribution -0.092 -0.451 -1.958 2.011 sum 9.091 10.658 1.451 14.084 Atomic orbital electron populations 1.80786 1.15767 1.12409 1.13939 1.31106 0.96880 0.89505 0.88226 1.18526 0.78933 0.97064 0.92805 1.44314 1.73494 1.01612 1.10388 1.19159 1.21797 1.01751 0.93601 0.91238 1.25381 0.96668 1.00812 1.00639 1.70038 1.20961 1.19526 1.46708 0.85416 0.78319 0.78920 0.78970 1.19510 1.21504 1.23538 1.20013 0.89958 0.82561 0.97204 0.90308 1.22629 0.97974 0.95053 1.00322 1.20487 0.90649 0.92478 0.93314 0.94079 1.58612 1.09610 1.14008 1.54640 1.20569 0.94568 0.96035 0.99661 1.20894 0.91137 1.00340 1.00835 1.21357 0.98095 0.96006 0.99344 1.21312 0.97894 0.95924 0.99308 1.20749 0.91541 0.99582 1.00328 1.21095 0.95763 0.94854 0.96905 0.87898 0.88534 0.94252 0.92578 0.92099 0.83612 0.83691 0.84920 0.83604 0.84138 0.86468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -28.23 18.54 20.01 0.37 -27.86 16 2 C 0.26 12.36 13.56 89.44 1.21 13.58 16 3 C 0.26 10.58 5.36 84.58 0.45 11.03 16 4 N -0.58 -24.94 2.47 -688.94 -1.70 -26.64 16 5 C -0.23 -11.32 8.09 84.03 0.68 -10.63 16 6 H 0.07 3.48 7.55 -2.91 -0.02 3.46 16 7 C -0.04 -2.01 4.83 84.86 0.41 -1.60 16 8 N -0.93 -50.62 9.60 21.65 0.21 -50.42 16 9 Si 0.95 42.90 29.61 68.60 2.03 44.93 16 10 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 11 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.31 -14.47 7.11 99.48 0.71 -13.76 16 13 C 0.21 7.84 3.38 44.91 0.15 8.00 16 14 H 0.08 2.86 7.92 -2.38 -0.02 2.85 16 15 C -0.12 -4.42 6.33 31.51 0.20 -4.22 16 16 C 0.14 4.19 3.99 44.84 0.18 4.37 16 17 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 18 N -0.84 -19.98 9.28 -169.00 -1.57 -21.54 16 19 C -0.11 -3.32 5.77 -19.56 -0.11 -3.43 16 20 C -0.11 -2.94 10.06 22.40 0.23 -2.71 16 21 C -0.13 -3.10 10.06 22.34 0.22 -2.87 16 22 C -0.13 -3.30 10.05 22.24 0.22 -3.08 16 23 C -0.10 -3.29 10.00 22.30 0.22 -3.07 16 24 C -0.08 -2.89 4.93 -19.56 -0.10 -2.99 16 25 H 0.10 3.33 8.06 -2.39 -0.02 3.31 16 26 H 0.10 4.29 6.61 -2.39 -0.02 4.27 16 27 H 0.25 13.69 8.31 -92.71 -0.77 12.92 16 28 H 0.06 2.43 7.12 -2.39 -0.02 2.41 16 29 H 0.06 2.23 7.98 -2.39 -0.02 2.21 16 30 H 0.35 6.76 9.07 -89.69 -0.81 5.94 16 31 H 0.35 7.40 8.92 -89.69 -0.80 6.61 16 32 H 0.13 2.70 8.06 -2.91 -0.02 2.68 16 33 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 34 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 35 H 0.12 3.69 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -62.18 299.14 2.83 -59.35 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: -0.49 Total: 19.81 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: 3.97 Total: 2.37 kcal Atomic # 7 Polarization: -123.77 SS G_CDS: -2.69 Total: -126.46 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -62.18 2.83 -59.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132251138.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.286 kcal (2) G-P(sol) polarization free energy of solvation -62.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds