Wall clock time and date at job start Mon Mar 30 2020 04:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13590 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47322 * 28.38020 * 3 2 1 5 5 C 1.36933 * 119.99880 * 275.57638 * 4 3 2 6 6 H 1.07997 * 120.00677 * 143.56426 * 5 4 3 7 7 C 1.38815 * 119.99822 * 323.56635 * 5 4 3 8 8 N 1.31621 * 120.00311 * 156.06873 * 7 5 4 9 9 Si 1.86803 * 120.00068 * 336.06293 * 7 5 4 10 10 H 1.48498 * 109.47249 * 95.32930 * 9 7 5 11 11 H 1.48503 * 109.47379 * 215.32946 * 9 7 5 12 12 H 1.48499 * 109.47034 * 335.32815 * 9 7 5 13 13 C 1.46494 * 120.00400 * 95.57399 * 4 3 2 14 14 H 1.09001 * 110.27194 * 57.68457 * 13 4 3 15 15 C 1.54347 * 110.30464 * 295.60921 * 13 4 3 16 16 C 1.54342 * 102.39405 * 267.42074 * 15 13 4 17 17 H 1.08995 * 110.30623 * 214.72480 * 16 15 13 18 18 N 1.46902 * 110.30127 * 92.57630 * 16 15 13 19 19 C 1.51368 * 105.17172 * 333.65270 * 16 15 13 20 20 C 1.38491 * 130.39285 * 197.16066 * 19 16 15 21 21 C 1.38103 * 120.21869 * 180.02562 * 20 19 16 22 22 C 1.38253 * 119.93057 * 0.02562 * 21 20 19 23 23 C 1.38100 * 119.93835 * 359.97438 * 22 21 20 24 24 C 1.38214 * 109.75413 * 17.18790 * 19 16 15 25 25 H 1.08997 * 109.47448 * 268.37562 * 3 2 1 26 26 H 1.09004 * 109.46912 * 148.37560 * 3 2 1 27 27 H 0.97003 * 120.00378 * 180.02562 * 8 7 5 28 28 H 1.09006 * 110.82504 * 149.19063 * 15 13 4 29 29 H 1.09000 * 110.81947 * 25.64853 * 15 13 4 30 30 H 1.00899 * 110.99841 * 179.57003 * 18 16 15 31 31 H 1.00901 * 111.00489 * 303.52009 * 18 16 15 32 32 H 1.08003 * 119.89261 * 0.02562 * 20 19 16 33 33 H 1.08001 * 120.03875 * 180.02562 * 21 20 19 34 34 H 1.08004 * 120.02851 * 179.71907 * 22 21 20 35 35 H 1.08000 * 119.89458 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.2143 -0.6565 5 6 3.2170 -2.3769 0.0569 6 1 2.9951 -3.3239 -0.4125 7 6 3.6240 -2.3384 1.3834 8 7 3.3052 -3.3214 2.1985 9 14 4.6243 -0.8913 2.0119 10 1 3.7166 0.1031 2.6383 11 1 5.6063 -1.3682 3.0186 12 1 5.3452 -0.2584 0.8783 13 6 3.4572 -1.1855 -2.0761 14 1 4.2279 -0.4357 -2.2550 15 6 2.2120 -0.8900 -2.9389 16 6 1.7025 -2.3061 -3.2813 17 1 1.2758 -2.3224 -4.2840 18 7 0.7050 -2.7413 -2.2946 19 6 2.9269 -3.1939 -3.2170 20 6 3.1416 -4.4647 -3.7239 21 6 4.3591 -5.0900 -3.5397 22 6 5.3674 -4.4461 -2.8467 23 6 5.1552 -3.1788 -2.3405 24 6 3.9350 -2.5500 -2.5246 25 1 2.9713 0.0300 1.0272 26 1 2.9709 0.8759 -0.5389 27 1 3.5893 -3.2943 3.1256 28 1 2.4872 -0.3479 -3.8437 29 1 1.4665 -0.3377 -2.3668 30 1 0.3595 -3.6638 -2.5125 31 1 1.0829 -2.7083 -1.3595 32 1 2.3542 -4.9685 -4.2650 33 1 4.5235 -6.0809 -3.9365 34 1 6.3186 -4.9354 -2.6978 35 1 5.9435 -2.6763 -1.7996 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132251344.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:56 Heat of formation + Delta-G solvation = 90.907008 kcal Electronic energy + Delta-G solvation = -19563.710857 eV Core-core repulsion = 16755.632439 eV Total energy + Delta-G solvation = -2808.078418 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.03493 -36.86654 -35.40392 -34.42436 -32.07518 -31.02903 -29.87965 -28.34387 -27.26478 -25.15261 -22.66110 -22.12719 -20.11742 -19.64956 -18.07607 -16.51400 -15.95790 -15.65004 -15.30476 -14.69155 -14.49125 -14.23693 -13.61590 -13.32130 -13.11592 -12.78976 -12.68033 -12.22356 -12.08792 -11.99581 -11.72514 -11.40023 -11.18220 -11.01619 -10.73452 -10.66157 -10.50570 -10.23351 -10.11770 -9.69606 -8.71792 -8.49616 -8.23361 -7.91677 -7.20028 -6.15894 -3.61430 1.82921 1.90164 3.15249 3.34634 3.35573 3.57208 3.71019 4.23861 4.35118 4.84617 4.89518 4.98080 5.07076 5.20736 5.40169 5.41972 5.47374 5.57295 5.64672 5.85235 5.87961 5.94827 6.10014 6.15736 6.27515 6.36448 6.45764 6.57276 6.65268 6.91244 6.97899 7.21701 7.48467 7.73674 7.77927 8.10670 8.18631 8.49881 8.72262 9.49360 9.81273 10.98097 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.018030 B = 0.010957 C = 0.008256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.586267 B = 2554.928702 C = 3390.763590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C 0.201 3.799 3 C 0.219 3.781 4 N -0.581 5.581 5 C -0.277 4.277 6 H 0.086 0.914 7 C 0.045 3.955 8 N -0.883 5.883 9 Si 0.863 3.137 10 H -0.281 1.281 11 H -0.297 1.297 12 H -0.262 1.262 13 C 0.204 3.796 14 H 0.053 0.947 15 C -0.140 4.140 16 C 0.141 3.859 17 H 0.073 0.927 18 N -0.834 5.834 19 C -0.133 4.133 20 C -0.111 4.111 21 C -0.127 4.127 22 C -0.124 4.124 23 C -0.079 4.079 24 C -0.047 4.047 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.266 0.734 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.329 0.671 31 H 0.366 0.634 32 H 0.109 0.891 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.400 2.062 -10.345 11.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.138 5.138 2 C -0.119 4.119 3 C 0.089 3.911 4 N -0.303 5.303 5 C -0.405 4.405 6 H 0.104 0.896 7 C -0.157 4.157 8 N -0.522 5.522 9 Si 0.692 3.308 10 H -0.209 1.209 11 H -0.224 1.224 12 H -0.186 1.186 13 C 0.098 3.902 14 H 0.071 0.929 15 C -0.180 4.180 16 C 0.029 3.971 17 H 0.091 0.909 18 N -0.364 5.364 19 C -0.135 4.135 20 C -0.130 4.130 21 C -0.146 4.146 22 C -0.142 4.142 23 C -0.097 4.097 24 C -0.048 4.048 25 H 0.105 0.895 26 H 0.108 0.892 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.104 0.896 30 H 0.140 0.860 31 H 0.184 0.816 32 H 0.127 0.873 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.306 2.602 -10.397 10.963 hybrid contribution 1.735 -0.350 0.906 1.988 sum 4.041 2.252 -9.491 10.559 Atomic orbital electron populations 1.80988 1.13787 1.09347 1.09661 1.31015 0.96629 0.92094 0.92172 1.18964 0.80534 0.91586 1.00002 1.44109 1.72545 1.08146 1.05511 1.18635 1.42497 0.85461 0.93903 0.89633 1.25416 0.97484 0.96415 0.96426 1.69877 1.43870 1.33662 1.04827 0.87169 0.81539 0.83240 0.78879 1.20897 1.22437 1.18631 1.20079 0.93386 0.92489 0.84206 0.92934 1.22969 0.99066 0.96039 0.99905 1.20721 0.87729 0.92658 0.95964 0.90859 1.59176 1.38041 1.31463 1.07770 1.21542 0.97655 0.95308 0.99036 1.20454 0.97049 0.94433 1.01024 1.20876 0.93755 0.99337 1.00588 1.20936 0.99000 0.95138 0.99141 1.20574 0.96891 0.94604 0.97644 1.20255 0.93212 0.96207 0.95168 0.89495 0.89241 0.92384 0.91149 0.89623 0.85987 0.81615 0.87302 0.86815 0.86620 0.86502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.11 18.54 42.15 0.78 -9.33 16 2 C 0.20 4.12 13.90 -20.76 -0.29 3.83 16 3 C 0.22 4.13 4.90 -6.83 -0.03 4.09 16 4 N -0.58 -11.80 1.84 -169.11 -0.31 -12.11 16 5 C -0.28 -6.74 7.55 -15.06 -0.11 -6.85 16 6 H 0.09 2.34 6.78 -52.49 -0.36 1.98 16 7 C 0.05 1.17 5.31 -17.43 -0.09 1.08 16 8 N -0.88 -25.02 13.97 55.49 0.78 -24.25 16 9 Si 0.86 19.38 25.11 -169.99 -4.27 15.11 16 10 H -0.28 -6.13 6.65 56.52 0.38 -5.76 16 11 H -0.30 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 13 C 0.20 3.59 3.59 -68.05 -0.24 3.34 16 14 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 15 C -0.14 -2.26 6.34 -25.32 -0.16 -2.42 16 16 C 0.14 2.34 4.00 -67.83 -0.27 2.07 16 17 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 18 N -0.83 -15.43 9.27 -4.77 -0.04 -15.47 16 19 C -0.13 -2.26 5.65 -104.21 -0.59 -2.85 16 20 C -0.11 -1.74 10.04 -39.54 -0.40 -2.14 16 21 C -0.13 -1.91 10.05 -39.63 -0.40 -2.31 16 22 C -0.12 -1.94 10.05 -39.63 -0.40 -2.34 16 23 C -0.08 -1.37 9.77 -39.53 -0.39 -1.76 16 24 C -0.05 -0.85 3.72 -104.20 -0.39 -1.24 16 25 H 0.09 1.77 3.01 -51.93 -0.16 1.61 16 26 H 0.09 1.32 8.03 -51.93 -0.42 0.91 16 27 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.09 1.52 5.80 -51.93 -0.30 1.22 16 30 H 0.33 5.58 9.07 -39.29 -0.36 5.23 16 31 H 0.37 7.93 7.01 -39.29 -0.28 7.65 16 32 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 33 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 34 H 0.12 1.54 8.06 -52.48 -0.42 1.11 16 35 H 0.12 1.98 8.06 -52.49 -0.42 1.55 16 LS Contribution 289.14 15.07 4.36 4.36 Total: -1.00 -28.37 289.14 -6.45 -34.82 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -3.98 Total: 14.37 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -3.76 Total: -7.50 kcal Atomic # 7 Polarization: -62.36 SS G_CDS: 1.20 Total: -61.16 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.27 Total: 15.11 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.37 -6.45 -34.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132251344.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.730 kcal (2) G-P(sol) polarization free energy of solvation -28.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds